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. 1991 Feb;173(4):1554–1560. doi: 10.1128/jb.173.4.1554-1560.1991

Characterization of the late-gene regulatory region of phage 21.

H C Guo 1, M Kainz 1, J W Roberts 1
PMCID: PMC207295  PMID: 1704887

Abstract

A segment of Escherichia coli bacteriophage 21 DNA encoding the late-gene regulator, Q21, and the late-gene leader RNA segment was sequenced; its structure is similar to those of the related phages lambda and 82. The leader RNA is about 45 nucleotides long and consists essentially entirely of sequences encoding the p-independent terminator that is the putative target of the antitermination activity of Q21. Like the corresponding regions of lambda and 82, the 21 late-gene promoter segment encodes an early transcription pause in vitro, at about nucleotide 18, during which Q21 presumably acts to modify RNA polymerase. The 21 Q gene, cloned in isolation, is active on the late-gene leader segment in trans, and its purified product is active as an antiterminator in vitro; Q21 represents a third late-gene antiterminator, in addition to those of lambda and 82. There is little evident similarity in the primary sequences of the three Q genes.

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Selected References

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  1. Burgess R. R., Jendrisak J. J. A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry. 1975 Oct 21;14(21):4634–4638. doi: 10.1021/bi00692a011. [DOI] [PubMed] [Google Scholar]
  2. Donis-Keller H., Maxam A. M., Gilbert W. Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 1977 Aug;4(8):2527–2538. doi: 10.1093/nar/4.8.2527. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Franklin N. C. "N" transcription antitermination proteins of bacteriophages lambda, phi 21 and P22. J Mol Biol. 1985 Jan 5;181(1):85–91. doi: 10.1016/0022-2836(85)90326-2. [DOI] [PubMed] [Google Scholar]
  4. Goliger J. A., Roberts J. W. Bacteriophage 82 gene Q and Q protein. Sequence, overproduction, and activity as a transcription antiterminator in vitro. J Biol Chem. 1987 Aug 25;262(24):11721–11725. [PubMed] [Google Scholar]
  5. Goliger J. A., Roberts J. W. Sequences required for antitermination by phage 82 Q protein. J Mol Biol. 1989 Dec 5;210(3):461–471. doi: 10.1016/0022-2836(89)90123-x. [DOI] [PubMed] [Google Scholar]
  6. Grayhack E. J., Roberts J. W. Purification of the bacteriophage lambda late gene regulator encoded by gene Q. J Biol Chem. 1983 Aug 10;258(15):9192–9196. [PubMed] [Google Scholar]
  7. Grayhack E. J., Yang X. J., Lau L. F., Roberts J. W. Phage lambda gene Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site. Cell. 1985 Aug;42(1):259–269. doi: 10.1016/s0092-8674(85)80121-5. [DOI] [PubMed] [Google Scholar]
  8. Lis J. T. Fractionation of DNA fragments by polyethylene glycol induced precipitation. Methods Enzymol. 1980;65(1):347–353. doi: 10.1016/s0076-6879(80)65044-7. [DOI] [PubMed] [Google Scholar]
  9. Lowe P. A., Hager D. A., Burgess R. R. Purification and properties of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase. Biochemistry. 1979 Apr 3;18(7):1344–1352. doi: 10.1021/bi00574a034. [DOI] [PubMed] [Google Scholar]
  10. Maxam A. M., Gilbert W. A new method for sequencing DNA. Proc Natl Acad Sci U S A. 1977 Feb;74(2):560–564. doi: 10.1073/pnas.74.2.560. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. McKenney K., Shimatake H., Court D., Schmeissner U., Brady C., Rosenberg M. A system to study promoter and terminator signals recognized by Escherichia coli RNA polymerase. Gene Amplif Anal. 1981;2:383–415. [PubMed] [Google Scholar]
  12. Metcalf P., Blum M., Freymann D., Turner M., Wiley D. C. Two variant surface glycoproteins of Trypanosoma brucei of different sequence classes have similar 6 A resolution X-ray structures. Nature. 1987 Jan 1;325(6099):84–86. doi: 10.1038/325084a0. [DOI] [PubMed] [Google Scholar]
  13. Pabo C. O., Sauer R. T. Protein-DNA recognition. Annu Rev Biochem. 1984;53:293–321. doi: 10.1146/annurev.bi.53.070184.001453. [DOI] [PubMed] [Google Scholar]
  14. Roberts J. W. Phage lambda and the regulation of transcription termination. Cell. 1988 Jan 15;52(1):5–6. doi: 10.1016/0092-8674(88)90523-5. [DOI] [PubMed] [Google Scholar]
  15. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Sauer R. T., Yocum R. R., Doolittle R. F., Lewis M., Pabo C. O. Homology among DNA-binding proteins suggests use of a conserved super-secondary structure. Nature. 1982 Jul 29;298(5873):447–451. doi: 10.1038/298447a0. [DOI] [PubMed] [Google Scholar]
  17. Schechtman M. G., Snedeker J. D., Roberts J. W. Genetics and structure of the late gene regulatory region of phage 82. Virology. 1980 Sep;105(2):393–404. doi: 10.1016/0042-6822(80)90040-9. [DOI] [PubMed] [Google Scholar]
  18. Schleif R. The specificity of lamboid phage late gene induction (lamboid phage late gene specificity). Virology. 1972 Nov;50(2):610–612. doi: 10.1016/0042-6822(72)90413-8. [DOI] [PubMed] [Google Scholar]
  19. Takeda Y., Ohlendorf D. H., Anderson W. F., Matthews B. W. DNA-binding proteins. Science. 1983 Sep 9;221(4615):1020–1026. doi: 10.1126/science.6308768. [DOI] [PubMed] [Google Scholar]
  20. Yang X. J., Goliger J. A., Roberts J. W. Specificity and mechanism of antitermination by Q proteins of bacteriophages lambda and 82. J Mol Biol. 1989 Dec 5;210(3):453–460. doi: 10.1016/0022-2836(89)90122-8. [DOI] [PubMed] [Google Scholar]
  21. Yang X. J., Hart C. M., Grayhack E. J., Roberts J. W. Transcription antitermination by phage lambda gene Q protein requires a DNA segment spanning the RNA start site. Genes Dev. 1987 May;1(3):217–226. doi: 10.1101/gad.1.3.217. [DOI] [PubMed] [Google Scholar]

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