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. 1991 Jun;173(11):3397–3407. doi: 10.1128/jb.173.11.3397-3407.1991

DNA sequences of three beta-1,4-endoglucanase genes from Thermomonospora fusca.

G Lao 1, G S Ghangas 1, E D Jung 1, D B Wilson 1
PMCID: PMC207951  PMID: 1904434

Abstract

The DNA sequences of the Thermomonospora fusca genes encoding cellulases E2 and E5 and the N-terminal end of E4 were determined. Each sequence contains an identical 14-bp inverted repeat upstream of the initiation codon. There were no significant homologies between the coding regions of the three genes. The E2 gene is 73% identical to the celA gene from Microbispora bispora, but this was the only homology found with other cellulase genes. E2 belongs to a family of cellulases that includes celA from M. bispora, cenA from Cellulomonas fimi, casA from an alkalophilic Streptomyces strain, and cellobiohydrolase II from Trichoderma reesei. E4 shows 44% identity to an avocado cellulase, while E5 belongs to the Bacillus cellulase family. There were strong similarities between the amino acid sequences of the E2 and E5 cellulose binding domains, and these regions also showed homology with C. fimi and Pseudomonas fluorescens cellulose binding domains.

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Selected References

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  1. Béguin P., Rocancourt M., Chebrou M. C., Aubert J. P. Mapping of mRNA encoding endoglucanase A from Clostridium thermocellum. Mol Gen Genet. 1986 Feb;202(2):251–254. doi: 10.1007/BF00331645. [DOI] [PubMed] [Google Scholar]
  2. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Fukumori F., Kudo T., Narahashi Y., Horikoshi K. Molecular cloning and nucleotide sequence of the alkaline cellulase gene from the alkalophilic Bacillus sp. strain 1139. J Gen Microbiol. 1986 Aug;132(8):2329–2335. doi: 10.1099/00221287-132-8-2329. [DOI] [PubMed] [Google Scholar]
  4. Fukumori F., Kudo T., Sashihara N., Nagata Y., Ito K., Horikoshi K. The third cellulase of alkalophilic Bacillus sp. strain N-4: evolutionary relationships within the cel gene family. Gene. 1989;76(2):289–298. doi: 10.1016/0378-1119(89)90169-8. [DOI] [PubMed] [Google Scholar]
  5. Fukumori F., Sashihara N., Kudo T., Horikoshi K. Nucleotide sequences of two cellulase genes from alkalophilic Bacillus sp. strain N-4 and their strong homology. J Bacteriol. 1986 Nov;168(2):479–485. doi: 10.1128/jb.168.2.479-485.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Ghangas G. S., Wilson D. B. Cloning of the Thermomonospora fusca Endoglucanase E2 Gene in Streptomyces lividans: Affinity Purification and Functional Domains of the Cloned Gene Product. Appl Environ Microbiol. 1988 Oct;54(10):2521–2526. doi: 10.1128/aem.54.10.2521-2526.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Gilkes N. R., Warren R. A., Miller R. C., Jr, Kilburn D. G. Precise excision of the cellulose binding domains from two Cellulomonas fimi cellulases by a homologous protease and the effect on catalysis. J Biol Chem. 1988 Jul 25;263(21):10401–10407. [PubMed] [Google Scholar]
  8. Guiseppi A., Cami B., Aymeric J. L., Ball G., Creuzet N. Homology between endoglucanase Z of Erwinia chrysanthemi and endoglucanases of Bacillus subtilis and alkalophilic Bacillus. Mol Microbiol. 1988 Jan;2(1):159–164. doi: 10.1111/j.1365-2958.1988.tb00017.x. [DOI] [PubMed] [Google Scholar]
  9. Hall J., Gilbert H. J. The nucleotide sequence of a carboxymethylcellulase gene from Pseudomonas fluorescens subsp. cellulosa. Mol Gen Genet. 1988 Jul;213(1):112–117. doi: 10.1007/BF00333406. [DOI] [PubMed] [Google Scholar]
  10. Henrissat B., Claeyssens M., Tomme P., Lemesle L., Mornon J. P. Cellulase families revealed by hydrophobic cluster analysis. Gene. 1989 Sep 1;81(1):83–95. doi: 10.1016/0378-1119(89)90339-9. [DOI] [PubMed] [Google Scholar]
  11. Hunkapiller M. W., Lujan E., Ostrander F., Hood L. E. Isolation of microgram quantities of proteins from polyacrylamide gels for amino acid sequence analysis. Methods Enzymol. 1983;91:227–236. doi: 10.1016/s0076-6879(83)91019-4. [DOI] [PubMed] [Google Scholar]
  12. Katz E., Thompson C. J., Hopwood D. A. Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. J Gen Microbiol. 1983 Sep;129(9):2703–2714. doi: 10.1099/00221287-129-9-2703. [DOI] [PubMed] [Google Scholar]
  13. Li W. H., Wu C. I., Luo C. C. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol. 1985 Mar;2(2):150–174. doi: 10.1093/oxfordjournals.molbev.a040343. [DOI] [PubMed] [Google Scholar]
  14. Lin E. S., Wilson D. B. Identification of a celE-binding protein and its potential role in induction of the celE gene in Thermomonospora fusca. J Bacteriol. 1988 Sep;170(9):3843–3846. doi: 10.1128/jb.170.9.3843-3846.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Lin E. S., Wilson D. B. Transcription of the celE gene in Thermomonospora fusca. J Bacteriol. 1988 Sep;170(9):3838–3842. doi: 10.1128/jb.170.9.3838-3842.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Lin E., Wilson D. B. Regulation of beta-1,4-Endoglucanase Synthesis in Thermomonospora fusca. Appl Environ Microbiol. 1987 Jun;53(6):1352–1357. doi: 10.1128/aem.53.6.1352-1357.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Nakai R., Horinouchi S., Beppu T. Cloning and nucleotide sequence of a cellulase gene, casA, from an alkalophilic Streptomyces strain. Gene. 1988 May 30;65(2):229–238. doi: 10.1016/0378-1119(88)90459-3. [DOI] [PubMed] [Google Scholar]
  18. Nakamura A., Uozumi T., Beppu T. Nucleotide sequence of a cellulase gene of Bacillus subtilis. Eur J Biochem. 1987 Apr 15;164(2):317–320. doi: 10.1111/j.1432-1033.1987.tb11060.x. [DOI] [PubMed] [Google Scholar]
  19. Petrícek M., Stajner K., Tichý P. Cloning of a thermostable alpha-amylase gene from Thermomonospora curvata and its expression in Streptomyces lividans. J Gen Microbiol. 1989 Dec;135(12):3303–3309. doi: 10.1099/00221287-135-12-3303. [DOI] [PubMed] [Google Scholar]
  20. Reeck G. R., Isackson P. J., Teller D. C. Domain structure in high molecular weight high mobility group nonhistone chromatin proteins. Nature. 1982 Nov 4;300(5887):76–78. doi: 10.1038/300076a0. [DOI] [PubMed] [Google Scholar]
  21. Robson L. M., Chambliss G. H. Endo-beta-1,4-glucanase gene of Bacillus subtilis DLG. J Bacteriol. 1987 May;169(5):2017–2025. doi: 10.1128/jb.169.5.2017-2025.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Teeri T. T., Lehtovaara P., Kauppinen S., Salovuori I., Knowles J. Homologous domains in Trichoderma reesei cellulolytic enzymes: gene sequence and expression of cellobiohydrolase II. Gene. 1987;51(1):43–52. doi: 10.1016/0378-1119(87)90472-0. [DOI] [PubMed] [Google Scholar]
  24. Towbin H., Staehelin T., Gordon J. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci U S A. 1979 Sep;76(9):4350–4354. doi: 10.1073/pnas.76.9.4350. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Wilbur W. J., Lipman D. J. Rapid similarity searches of nucleic acid and protein data banks. Proc Natl Acad Sci U S A. 1983 Feb;80(3):726–730. doi: 10.1073/pnas.80.3.726. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Wong W. K., Gerhard B., Guo Z. M., Kilburn D. G., Warren A. J., Miller R. C., Jr Characterization and structure of an endoglucanase gene cenA of Cellulomonas fimi. Gene. 1986;44(2-3):315–324. doi: 10.1016/0378-1119(86)90196-4. [DOI] [PubMed] [Google Scholar]
  27. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
  28. Zappe H., Jones W. A., Jones D. T., Woods D. R. Structure of an endo-beta-1,4-glucanase gene from Clostridium acetobutylicum P262 showing homology with endoglucanase genes from Bacillus spp. Appl Environ Microbiol. 1988 May;54(5):1289–1292. doi: 10.1128/aem.54.5.1289-1292.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]

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