Abstract
The origin of viral strand replication of the filamentous bacteriophage Pf3 has been characterized in Escherichia coli by in vitro deletion mapping techniques. The origin region was functionally identified by its ability to convey replicative properties to a recombinant plasmid in a polA host in which the replication origin of the vector plasmid is not functional. The origin of Pf3 viral strand replication is contained within a DNA sequence of 139 bp. This sequence covers almost completely one of the intergenic regions of the Pf3 genome, and it specifies both replication initiation and termination functions. Although no nucleotide sequence homology is present between the Pf3 origin of viral strand replication and that of the E. coli filamentous phages Ff (M13, f1, and fd) and IKe, their map positions and functional properties are very similar.
Full text
PDF





Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Baas P. D. DNA replication of single-stranded Escherichia coli DNA phages. Biochim Biophys Acta. 1985 Jun 24;825(2):111–139. doi: 10.1016/0167-4781(85)90096-x. [DOI] [PubMed] [Google Scholar]
- Bagdasarian M., Timmis K. N. Host: vector systems for gene cloning in Pseudomonas. Curr Top Microbiol Immunol. 1982;96:47–67. doi: 10.1007/978-3-642-68315-2_4. [DOI] [PubMed] [Google Scholar]
- Beck E., Sommer R., Auerswald E. A., Kurz C., Zink B., Osterburg G., Schaller H., Sugimoto K., Sugisaki H., Okamoto T. Nucleotide sequence of bacteriophage fd DNA. Nucleic Acids Res. 1978 Dec;5(12):4495–4503. doi: 10.1093/nar/5.12.4495. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen E. Y., Seeburg P. H. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA. DNA. 1985 Apr;4(2):165–170. doi: 10.1089/dna.1985.4.165. [DOI] [PubMed] [Google Scholar]
- Cleary J. M., Ray D. S. Deletion analysis of the cloned replication origin region from bacteriophage M13. J Virol. 1981 Oct;40(1):197–203. doi: 10.1128/jvi.40.1.197-203.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cleary J. M., Ray D. S. Replication of the plasmid pBR322 under the control of a cloned replication origin from the single-stranded DNA phage M13. Proc Natl Acad Sci U S A. 1980 Aug;77(8):4638–4642. doi: 10.1073/pnas.77.8.4638. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dotto G. P., Horiuchi K., Jakes K. S., Zinder N. D. Replication origin of bacteriophage f1. Two signals required for its function. J Mol Biol. 1982 Dec 5;162(2):335–343. doi: 10.1016/0022-2836(82)90530-7. [DOI] [PubMed] [Google Scholar]
- Dotto G. P., Horiuchi K., Zinder N. D. Initiation and termination of phage f1 plus-strand synthesis. Proc Natl Acad Sci U S A. 1982 Dec;79(23):7122–7126. doi: 10.1073/pnas.79.23.7122. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gellert M., Mizuuchi K., O'Dea M. H., Itoh T., Tomizawa J. I. Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity. Proc Natl Acad Sci U S A. 1977 Nov;74(11):4772–4776. doi: 10.1073/pnas.74.11.4772. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hill D. F., Petersen G. B. Nucleotide sequence of bacteriophage f1 DNA. J Virol. 1982 Oct;44(1):32–46. doi: 10.1128/jvi.44.1.32-46.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Horiuchi K. Co-evolution of a filamentous bacteriophage and its defective interfering particles. J Mol Biol. 1983 Sep 15;169(2):389–407. doi: 10.1016/s0022-2836(83)80057-6. [DOI] [PubMed] [Google Scholar]
- Kim M. H., Hines J. C., Ray D. S. Viable deletions of the M13 complementary strand origin. Proc Natl Acad Sci U S A. 1981 Nov;78(11):6784–6788. doi: 10.1073/pnas.78.11.6784. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Konings R. N., Luiten R. G., Peeters B. P. Mike, a chimeric filamentous phage designed for the separate production of either DNA strand of pKUN vector plasmids by F+ cells. Gene. 1986;46(2-3):269–276. doi: 10.1016/0378-1119(86)90411-7. [DOI] [PubMed] [Google Scholar]
- Livermore D. M., Pitt T. L. Dissociation of surface properties and "intrinsic" resistance to beta lactams in Pseudomonas aeruginosa. J Med Microbiol. 1986 Nov;22(3):217–224. doi: 10.1099/00222615-22-3-217. [DOI] [PubMed] [Google Scholar]
- Luiten R. G., Eggen R. I., Schoenmakers J. G., Konings R. N. Spontaneous deletion mutants of bacteriophage Pf3: mapping of signals involved in replication and assembly. DNA. 1987 Apr;6(2):129–137. doi: 10.1089/dna.1987.6.129. [DOI] [PubMed] [Google Scholar]
- Luiten R. G., Putterman D. G., Schoenmakers J. G., Konings R. N., Day L. A. Nucleotide sequence of the genome of Pf3, an IncP-1 plasmid-specific filamentous bacteriophage of Pseudomonas aeruginosa. J Virol. 1985 Oct;56(1):268–276. doi: 10.1128/jvi.56.1.268-276.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Luiten R. G., Schoenmakers J. G., Konings R. N. The major coat protein gene of the filamentous Pseudomonas aeruginosa phage Pf3: absence of an N-terminal leader signal sequence. Nucleic Acids Res. 1983 Nov 25;11(22):8073–8085. doi: 10.1093/nar/11.22.8073. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Messing J., Vieira J. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments. Gene. 1982 Oct;19(3):269–276. doi: 10.1016/0378-1119(82)90016-6. [DOI] [PubMed] [Google Scholar]
- Nikaido H., Vaara M. Molecular basis of bacterial outer membrane permeability. Microbiol Rev. 1985 Mar;49(1):1–32. doi: 10.1128/mr.49.1.1-32.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Peeters B. P., Peters R. M., Schoenmakers J. G., Konings R. N. Nucleotide sequence and genetic organization of the genome of the N-specific filamentous bacteriophage IKe. Comparison with the genome of the F-specific filamentous phages M13, fd and f1. J Mol Biol. 1985 Jan 5;181(1):27–39. doi: 10.1016/0022-2836(85)90322-5. [DOI] [PubMed] [Google Scholar]
- Peeters B. P., Schoenmakers J. G., Konings R. N. Comparison of the DNA sequences involved in replication and packaging of the filamentous phages IKe and Ff (M13, fd, and f1). DNA. 1987 Apr;6(2):139–147. doi: 10.1089/dna.1987.6.139. [DOI] [PubMed] [Google Scholar]
- Peeters B. P., Schoenmakers J. G., Konings R. N. The gene II proteins of the filamentous phages IKe and Ff (M13, fd and f1) are not functionally interchangeable during viral strand replication. Nucleic Acids Res. 1986 Jun 25;14(12):5067–5080. doi: 10.1093/nar/14.12.5067. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sakaguchi K. Vectors for gene cloning in Pseudomonas and their applications. Curr Top Microbiol Immunol. 1982;96:31–45. doi: 10.1007/978-3-642-68315-2_3. [DOI] [PubMed] [Google Scholar]
- Stanisich V. A. The properties and host range of male-specific bacteriophages of Pseudomonas aeruginosa. J Gen Microbiol. 1974 Oct;84(2):332–342. doi: 10.1099/00221287-84-2-332. [DOI] [PubMed] [Google Scholar]
- Staudenbauer W. L. Structure and replication of the colicin E1 plasmid. Curr Top Microbiol Immunol. 1978;83:93–156. doi: 10.1007/978-3-642-67087-9_3. [DOI] [PubMed] [Google Scholar]
- Zinder N. D., Horiuchi K. Multiregulatory element of filamentous bacteriophages. Microbiol Rev. 1985 Jun;49(2):101–106. doi: 10.1128/mr.49.2.101-106.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- van Wezenbeek P. M., Hulsebos T. J., Schoenmakers J. G. Nucleotide sequence of the filamentous bacteriophage M13 DNA genome: comparison with phage fd. Gene. 1980 Oct;11(1-2):129–148. doi: 10.1016/0378-1119(80)90093-1. [DOI] [PubMed] [Google Scholar]
- van der Ende A., Teertstra R., van der Avoort H. G., Weisbeek P. J. Initiation signals for complementary strand DNA synthesis on single-stranded plasmid DNA. Nucleic Acids Res. 1983 Jul 25;11(14):4957–4975. doi: 10.1093/nar/11.14.4957. [DOI] [PMC free article] [PubMed] [Google Scholar]