Abstract
Evidence is presented that recA functions which promote the SOS functions of mutagenesis, LexA protein proteolysis, and lambda cI repressor proteolysis are each genetically separable from the others. This separation was observed in recombination-proficient recA mutants and rec+ (F' recA56) heterodiploids. recA430, recA433, and recA435 mutants and recA+ (F' recA56) heterodiploids were inducible for only one or two of the three functions and defective for mutagenesis. recA80 and recA432 mutants were constitutively activated for two of the three functions in that these mutants did not have to be induced to express the functions. We propose that binding of RecA protein to damaged DNA and subsequent interaction with small inducer molecules gives rise to conformational changes in RecA protein. These changes promote surface-surface interactions with other target proteins, such as cI and LexA proteins. By this model, the recA mutants are likely to have incorrect amino acids substituted as sites in the RecA protein structure which affect surface regions required for protein-protein interactions. The constitutively activated mutants could likewise insert altered amino acids at sites in RecA which are involved in the activation of RecA protein by binding small molecules or polynucleotides which metabolically regulate RecA protein.
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- Blanco M., Herrera G., Collado P., Rebollo J. E., Botella L. M. Influence of RecA protein on induced mutagenesis. Biochimie. 1982 Aug-Sep;64(8-9):633–636. doi: 10.1016/s0300-9084(82)80102-8. [DOI] [PubMed] [Google Scholar]
- Burckhardt S. E., Woodgate R., Scheuermann R. H., Echols H. UmuD mutagenesis protein of Escherichia coli: overproduction, purification, and cleavage by RecA. Proc Natl Acad Sci U S A. 1988 Mar;85(6):1811–1815. doi: 10.1073/pnas.85.6.1811. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Casaregola S., D'Ari R., Huisman O. Role of DNA replication in the induction and turn-off of the SOS response in Escherichia coli. Mol Gen Genet. 1982;185(3):440–444. doi: 10.1007/BF00334136. [DOI] [PubMed] [Google Scholar]
- Dutreix M., Bailone A., Devoret R. Efficiency of induction of prophage lambda mutants as a function of recA alleles. J Bacteriol. 1985 Mar;161(3):1080–1085. doi: 10.1128/jb.161.3.1080-1085.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Echols H. Mutation rate: some biological and biochemical considerations. Biochimie. 1982 Aug-Sep;64(8-9):571–575. doi: 10.1016/s0300-9084(82)80089-8. [DOI] [PubMed] [Google Scholar]
- Ennis D. G., Fisher B., Edmiston S., Mount D. W. Dual role for Escherichia coli RecA protein in SOS mutagenesis. Proc Natl Acad Sci U S A. 1985 May;82(10):3325–3329. doi: 10.1073/pnas.82.10.3325. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ennis D. G., Peterson K. R., Mount D. W. Increased expression of the Escherichia coli umuDC operon restores SOS mutagenesis in lexA41 cells. Mol Gen Genet. 1988 Aug;213(2-3):541–544. doi: 10.1007/BF00339628. [DOI] [PubMed] [Google Scholar]
- Garges S., Adhya S. Sites of allosteric shift in the structure of the cyclic AMP receptor protein. Cell. 1985 Jul;41(3):745–751. doi: 10.1016/s0092-8674(85)80055-6. [DOI] [PubMed] [Google Scholar]
- Gimble F. S., Sauer R. T. Mutations in bacteriophage lambda repressor that prevent RecA-mediated cleavage. J Bacteriol. 1985 Apr;162(1):147–154. doi: 10.1128/jb.162.1.147-154.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Glickman W., Guijt N., Morand P. The genetic characterization of lexB32, lexB33 and lexB35 mutations of Escherichia coli: location and complementation pattern for UV resistance. Mol Gen Genet. 1977 Nov 29;157(1):83–89. doi: 10.1007/BF00268690. [DOI] [PubMed] [Google Scholar]
- Kato T., Shinoura Y. Isolation and characterization of mutants of Escherichia coli deficient in induction of mutations by ultraviolet light. Mol Gen Genet. 1977 Nov 14;156(2):121–131. doi: 10.1007/BF00283484. [DOI] [PubMed] [Google Scholar]
- Khidhir M. A., Casaregola S., Holland I. B. Mechanism of transient inhibition of DNA synthesis in ultraviolet-irradiated E. coli: inhibition is independent of recA whilst recovery requires RecA protein itself and an additional, inducible SOS function. Mol Gen Genet. 1985;199(1):133–140. doi: 10.1007/BF00327522. [DOI] [PubMed] [Google Scholar]
- Little J. W. Autodigestion of lexA and phage lambda repressors. Proc Natl Acad Sci U S A. 1984 Mar;81(5):1375–1379. doi: 10.1073/pnas.81.5.1375. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Little J. W., Mount D. W. The SOS regulatory system of Escherichia coli. Cell. 1982 May;29(1):11–22. doi: 10.1016/0092-8674(82)90085-x. [DOI] [PubMed] [Google Scholar]
- Lu C., Echols H. RecA protein and SOS. Correlation of mutagenesis phenotype with binding of mutant RecA proteins to duplex DNA and LexA cleavage. J Mol Biol. 1987 Aug 5;196(3):497–504. doi: 10.1016/0022-2836(87)90027-1. [DOI] [PubMed] [Google Scholar]
- McPartland A., Green L., Echols H. Control of recA gene RNA in E. coli: regulatory and signal genes. Cell. 1980 Jul;20(3):731–737. doi: 10.1016/0092-8674(80)90319-0. [DOI] [PubMed] [Google Scholar]
- Melechen N. E., Go G. Induction of lambdoid prophages by amino acid deprivation: differential inducibility; role of recA. Mol Gen Genet. 1980;180(1):147–155. doi: 10.1007/BF00267364. [DOI] [PubMed] [Google Scholar]
- Morand P., Blanco M., Devoret R. Characterization of lexB mutations in Escherichia coli K-12. J Bacteriol. 1977 Aug;131(2):572–582. doi: 10.1128/jb.131.2.572-582.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Moreau P. L., Roberts J. W. RecA protein--promoted lambda repressor cleavage: complementation between RecA441 and RecA430 proteins in vitro. Mol Gen Genet. 1984;198(2):25–34. doi: 10.1007/BF00328696. [DOI] [PubMed] [Google Scholar]
- Mount D. W. Isolation and characterization of mutants of lambda recA which synthesize a hyperactive recA protein. Virology. 1979 Oct 30;98(2):484–488. doi: 10.1016/0042-6822(79)90574-9. [DOI] [PubMed] [Google Scholar]
- Nohmi T., Battista J. R., Dodson L. A., Walker G. C. RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation. Proc Natl Acad Sci U S A. 1988 Mar;85(6):1816–1820. doi: 10.1073/pnas.85.6.1816. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ogawa T., Wabiko H., Tsurimoto T., Horii T., Masukata H., Ogawa H. Characteristics of purified recA protein and the regulation of its synthesis in vivo. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 2):909–915. doi: 10.1101/sqb.1979.043.01.099. [DOI] [PubMed] [Google Scholar]
- Peterson K. R., Mount D. W. Differential repression of SOS genes by unstable lexA41 (tsl-1) protein causes a "split-phenotype" in Escherichia coli K-12. J Mol Biol. 1987 Jan 5;193(1):27–40. doi: 10.1016/0022-2836(87)90623-1. [DOI] [PubMed] [Google Scholar]
- Peterson K. R., Ossanna N., Mount D. W. The Escherichia coli K-12 lexA2 gene encodes a hypocleavable repressor. J Bacteriol. 1988 Apr;170(4):1975–1977. doi: 10.1128/jb.170.4.1975-1977.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roberts J. W., Roberts C. W. Two mutations that alter the regulatory activity of E. coli recA protein. Nature. 1981 Apr 2;290(5805):422–424. doi: 10.1038/290422a0. [DOI] [PubMed] [Google Scholar]
- Shinagawa H., Iwasaki H., Kato T., Nakata A. RecA protein-dependent cleavage of UmuD protein and SOS mutagenesis. Proc Natl Acad Sci U S A. 1988 Mar;85(6):1806–1810. doi: 10.1073/pnas.85.6.1806. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Slilaty S. N., Little J. W. Lysine-156 and serine-119 are required for LexA repressor cleavage: a possible mechanism. Proc Natl Acad Sci U S A. 1987 Jun;84(12):3987–3991. doi: 10.1073/pnas.84.12.3987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tessman E. S., Peterson P. K. Isolation of protease-proficient, recombinase-deficient recA mutants of Escherichia coli K-12. J Bacteriol. 1985 Aug;163(2):688–695. doi: 10.1128/jb.163.2.688-695.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Volkert M. R., Hartke M. A. Effects of the Escherichia coli recF suppressor mutation, recA801, on recF-dependent DNA-repair associated phenomena. Mutat Res. 1987 Nov;184(3):181–186. doi: 10.1016/0167-8817(87)90015-0. [DOI] [PubMed] [Google Scholar]
- Volkert M. R., Hartke M. A. Suppression of Escherichia coli recF mutations by recA-linked srfA mutations. J Bacteriol. 1984 Feb;157(2):498–506. doi: 10.1128/jb.157.2.498-506.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Volkert M. R., Margossian L. J., Clark A. J. Two-component suppression of recF143 by recA441 in Escherichia coli K-12. J Bacteriol. 1984 Nov;160(2):702–705. doi: 10.1128/jb.160.2.702-705.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walker G. C. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol Rev. 1984 Mar;48(1):60–93. doi: 10.1128/mr.48.1.60-93.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weber I. T., Gilliland G. L., Harman J. G., Peterkofsky A. Crystal structure of a cyclic AMP-independent mutant of catabolite gene activator protein. J Biol Chem. 1987 Apr 25;262(12):5630–5636. [PubMed] [Google Scholar]
- West S. C. Protein-DNA interactions in genetic recombination. Trends Genet. 1988 Jan;4(1):8–13. doi: 10.1016/0168-9525(88)90121-7. [DOI] [PubMed] [Google Scholar]
- Willetts N. S., Clark A. J., Low B. Genetic location of certain mutations conferring recombination deficiency in Escherichia coli. J Bacteriol. 1969 Jan;97(1):244–249. doi: 10.1128/jb.97.1.244-249.1969. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Witkin E. M., Roegner-Maniscalco V., Sweasy J. B., McCall J. O. Recovery from ultraviolet light-induced inhibition of DNA synthesis requires umuDC gene products in recA718 mutant strains but not in recA+ strains of Escherichia coli. Proc Natl Acad Sci U S A. 1987 Oct;84(19):6805–6809. doi: 10.1073/pnas.84.19.6805. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yancey S. D., Porter R. D. Negative complementation of recA protein by recA1 polypeptide: in vivo recombination requires a multimeric form of recA protein. Mol Gen Genet. 1984;193(1):53–57. doi: 10.1007/BF00327413. [DOI] [PubMed] [Google Scholar]