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. 1989 Jul;171(7):3760–3766. doi: 10.1128/jb.171.7.3760-3766.1989

DnaA protein overproduction abolishes cell cycle specificity of DNA replication from oriC in Escherichia coli.

O Pierucci 1, M Rickert 1, C E Helmstetter 1
PMCID: PMC210122  PMID: 2544554

Abstract

Initiation of DNA replication from oriC in Escherichia coli takes place at a specific time in the cell division cycle, whether the origin is located on a chromosome or a minichromosome, and requires participation of the product of the dnaA gene. The effects of overproduction of DnaA protein on the cell cycle specificity of the initiation event were determined by using minichromosome replication as the assay system. DnaA protein was overproduced by inducing the expression of plasmid-encoded dnaA genes under control of either the ptac or lambda pL promoter. Induction of DnaA protein synthesis caused a burst of minichromosome replication in cells at all ages in the division cycle. The magnitude of the burst was consistent with the initiation of one round of replication per minichromosome in all cells. The replication burst was followed by a period of reduced minichromosome replication, with the reduction being greater at 30 than at 41 degrees C. The results support the idea that the DnaA protein participates in oriC replication at a stage that is limiting for initiation. Excess DnaA protein enabled all cells to achieve the state required for initiation of DNA polymerization by either effecting or overriding the normal limiting process.

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Selected References

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  1. Atlung T., Clausen E. S., Hansen F. G. Autoregulation of the dnaA gene of Escherichia coli K12. Mol Gen Genet. 1985;200(3):442–450. doi: 10.1007/BF00425729. [DOI] [PubMed] [Google Scholar]
  2. Atlung T., Løbner-Olesen A., Hansen F. G. Overproduction of DnaA protein stimulates initiation of chromosome and minichromosome replication in Escherichia coli. Mol Gen Genet. 1987 Jan;206(1):51–59. doi: 10.1007/BF00326535. [DOI] [PubMed] [Google Scholar]
  3. Baker T. A., Funnell B. E., Kornberg A. Helicase action of dnaB protein during replication from the Escherichia coli chromosomal origin in vitro. J Biol Chem. 1987 May 15;262(14):6877–6885. [PubMed] [Google Scholar]
  4. Baker T. A., Kornberg A. Transcriptional activation of initiation of replication from the E. coli chromosomal origin: an RNA-DNA hybrid near oriC. Cell. 1988 Oct 7;55(1):113–123. doi: 10.1016/0092-8674(88)90014-1. [DOI] [PubMed] [Google Scholar]
  5. Baker T. A., Sekimizu K., Funnell B. E., Kornberg A. Extensive unwinding of the plasmid template during staged enzymatic initiation of DNA replication from the origin of the Escherichia coli chromosome. Cell. 1986 Apr 11;45(1):53–64. doi: 10.1016/0092-8674(86)90537-4. [DOI] [PubMed] [Google Scholar]
  6. Bramhill D., Kornberg A. Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell. 1988 Mar 11;52(5):743–755. doi: 10.1016/0092-8674(88)90412-6. [DOI] [PubMed] [Google Scholar]
  7. Braun R. E., O'Day K., Wright A. Autoregulation of the DNA replication gene dnaA in E. coli K-12. Cell. 1985 Jan;40(1):159–169. doi: 10.1016/0092-8674(85)90319-8. [DOI] [PubMed] [Google Scholar]
  8. Frazier M. W., Mosig G. Roles of the Escherichia coli heat shock sigma factor 32 in early and late gene expression of bacteriophage T4. J Bacteriol. 1988 Mar;170(3):1384–1388. doi: 10.1128/jb.170.3.1384-1388.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Fuller R. S., Funnell B. E., Kornberg A. The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites. Cell. 1984 Oct;38(3):889–900. doi: 10.1016/0092-8674(84)90284-8. [DOI] [PubMed] [Google Scholar]
  10. Funnell B. E., Baker T. A., Kornberg A. In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome. J Biol Chem. 1987 Jul 25;262(21):10327–10334. [PubMed] [Google Scholar]
  11. Guzman E. C., Jimenez-Sanchez A., Orr E., Pritchard R. H. Heat stress in the presence of low RNA polymerase activity increases chromosome copy number of Escherichia coli. Mol Gen Genet. 1988 May;212(2):203–206. doi: 10.1007/BF00334685. [DOI] [PubMed] [Google Scholar]
  12. Hansen F. G., Koefoed S., Sørensen L., Atlung T. Titration of DnaA protein by oriC DnaA-boxes increases dnaA gene expression in Escherichia coli. EMBO J. 1987 Jan;6(1):255–258. doi: 10.1002/j.1460-2075.1987.tb04747.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Helmstetter C. E., Leonard A. C. Coordinate initiation of chromosome and minichromosome replication in Escherichia coli. J Bacteriol. 1987 Aug;169(8):3489–3494. doi: 10.1128/jb.169.8.3489-3494.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Helmstetter C. E., Pierucci O. DNA synthesis during the division cycle of three substrains of Escherichia coli B/r. J Mol Biol. 1976 Apr 15;102(3):477–486. doi: 10.1016/0022-2836(76)90329-6. [DOI] [PubMed] [Google Scholar]
  15. Koppes L. J. OriC plasmids do not affect timing of chromosome replication in Escherichia coli K12. Mol Gen Genet. 1987 Aug;209(1):188–192. doi: 10.1007/BF00329857. [DOI] [PubMed] [Google Scholar]
  16. Koppes L. J., von Meyenburg K. Nonrandom minichromosome replication in Escherichia coli K-12. J Bacteriol. 1987 Jan;169(1):430–433. doi: 10.1128/jb.169.1.430-433.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Kücherer C., Lother H., Kölling R., Schauzu M. A., Messer W. Regulation of transcription of the chromosomal dnaA gene of Escherichia coli. Mol Gen Genet. 1986 Oct;205(1):115–121. doi: 10.1007/BF02428040. [DOI] [PubMed] [Google Scholar]
  18. Leonard A. C., Helmstetter C. E. Cell cycle-specific replication of Escherichia coli minichromosomes. Proc Natl Acad Sci U S A. 1986 Jul;83(14):5101–5105. doi: 10.1073/pnas.83.14.5101. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Matsui M., Oka A., Takanami M., Yasuda S., Hirota Y. Sites of dnaA protein-binding in the replication origin of the Escherichia coli K-12 chromosome. J Mol Biol. 1985 Aug 5;184(3):529–533. doi: 10.1016/0022-2836(85)90299-2. [DOI] [PubMed] [Google Scholar]
  20. Messer W., Bellekes U., Lother H. Effect of dam methylation on the activity of the E. coli replication origin, oriC. EMBO J. 1985 May;4(5):1327–1332. doi: 10.1002/j.1460-2075.1985.tb03780.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Messer W. Initiation of DNA replication in Escherichia coli. J Bacteriol. 1987 Aug;169(8):3395–3399. doi: 10.1128/jb.169.8.3395-3399.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Ogden G. B., Pratt M. J., Schaechter M. The replicative origin of the E. coli chromosome binds to cell membranes only when hemimethylated. Cell. 1988 Jul 1;54(1):127–135. doi: 10.1016/0092-8674(88)90186-9. [DOI] [PubMed] [Google Scholar]
  23. Pierucci O., Helmstetter C. E., Rickert M., Weinberger M., Leonard A. C. Overexpression of the dnaA gene in Escherichia coli B/r: chromosome and minichromosome replication in the presence of rifampin. J Bacteriol. 1987 May;169(5):1871–1877. doi: 10.1128/jb.169.5.1871-1877.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Projan S. J., Carleton S., Novick R. P. Determination of plasmid copy number by fluorescence densitometry. Plasmid. 1983 Mar;9(2):182–190. doi: 10.1016/0147-619x(83)90019-7. [DOI] [PubMed] [Google Scholar]
  25. Rokeach L. A., Zyskind J. W. RNA terminating within the E. coli origin of replication: stringent regulation and control by DnaA protein. Cell. 1986 Aug 29;46(5):763–771. doi: 10.1016/0092-8674(86)90352-1. [DOI] [PubMed] [Google Scholar]
  26. Russell D. W., Zinder N. D. Hemimethylation prevents DNA replication in E. coli. Cell. 1987 Sep 25;50(7):1071–1079. doi: 10.1016/0092-8674(87)90173-5. [DOI] [PubMed] [Google Scholar]
  27. Schauzu M. A., Kücherer C., Kölling R., Messer W., Lother H. Transcripts within the replication origin, oriC, of Escherichia coli. Nucleic Acids Res. 1987 Mar 25;15(6):2479–2497. doi: 10.1093/nar/15.6.2479. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Sekimizu K., Bramhill D., Kornberg A. ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome. Cell. 1987 Jul 17;50(2):259–265. doi: 10.1016/0092-8674(87)90221-2. [DOI] [PubMed] [Google Scholar]
  29. Sekimizu K., Bramhill D., Kornberg A. Sequential early stages in the in vitro initiation of replication at the origin of the Escherichia coli chromosome. J Biol Chem. 1988 May 25;263(15):7124–7130. [PubMed] [Google Scholar]
  30. Sekimizu K., Yung B. Y., Kornberg A. The dnaA protein of Escherichia coli. Abundance, improved purification, and membrane binding. J Biol Chem. 1988 May 25;263(15):7136–7140. [PubMed] [Google Scholar]
  31. Smith D. W., Garland A. M., Herman G., Enns R. E., Baker T. A., Zyskind J. W. Importance of state of methylation of oriC GATC sites in initiation of DNA replication in Escherichia coli. EMBO J. 1985 May;4(5):1319–1326. doi: 10.1002/j.1460-2075.1985.tb03779.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Stark M. J. Multicopy expression vectors carrying the lac repressor gene for regulated high-level expression of genes in Escherichia coli. Gene. 1987;51(2-3):255–267. doi: 10.1016/0378-1119(87)90314-3. [DOI] [PubMed] [Google Scholar]
  33. Wang Q. P., Kaguni J. M. Transcriptional repression of the dnaA gene of Escherichia coli by dnaA protein. Mol Gen Genet. 1987 Oct;209(3):518–525. doi: 10.1007/BF00331158. [DOI] [PubMed] [Google Scholar]
  34. Weinberger M., Helmstetter C. E. Inhibition of protein synthesis transiently stimulates initiation of minichromosome replication in Escherichia coli. J Bacteriol. 1989 Jul;171(7):3591–3596. doi: 10.1128/jb.171.7.3591-3596.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Xu Y. C., Bremer H. Chromosome replication in Escherichia coli induced by oversupply of DnaA. Mol Gen Genet. 1988 Jan;211(1):138–142. doi: 10.1007/BF00338404. [DOI] [PubMed] [Google Scholar]
  36. Zyskind J. W., Deen L. T., Smith D. W. Temporal sequence of events during the initiation process in Escherichia coli deoxyribonucleic acid replication: roles of the dnaA and dnaC gene products and ribonucleic acid polymerase. J Bacteriol. 1977 Mar;129(3):1466–1475. doi: 10.1128/jb.129.3.1466-1475.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]

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