Abstract
To explore the relationships between transcription, messenger RNA (mRNA) processing, and nuclear structure, ribonucleoprotein particles containing heterogeneous nuclear RNA (hnRNP) have been purified from globin-producing mouse Friend erythroleukemia cells. These nuclear hnRNP particles sediment at 50S-200S and contain, in addition to high molecular weight hnRNA, a specific set of nuclear proteins predominated by a major component of approximately 38,000 mol wt. The hnRNP particles are free of histones and ribosomal structural proteins, indicating their purification from the two other major nucleoprotein components of the nucleus: chromatin and nucleolar ribosomal precursor RNP particles. Th authenticity of the Friend cell hnRNP particles is demonstrated by the results of reconstruction experiments with deproteinized hnRNA, and by the resistance of the articles to dissociation during isopycnic banding in Cs2SO4 gradients without prior aldehyde fixation. Hybridization analysis with cloned mouse beta-globin DNA demonstrates that hnRNP particles from induced Friend cells contain newly synthesized transcripts of the beta-globin gene. Agarose gel electrophoresis of hnRNP particle-derived RNA denatured in glyoxal followed by "Northern" transfer to diazobenzyloxymethyl paper and hybridization with 32P-labeled cloned mouse beta-globin DNA reveals the presence in hnRNP of two size classes of beta-globin gene transcripts, the larger of which corresponds to the pre-spliced 15S beta-globin mRNA precursor previously identified in whole nuclear RNA, and the smaller of which corresponds to completely processed 9S beta-globin mRNA. These results establish, for the first time, that the nuclear transcripts of a specific, well-defined eukaryotic structural gene can be isolated in an RNP particle form, and that their RNP structure persists throughout mRNA splicing.
Full Text
The Full Text of this article is available as a PDF (881.8 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Alwine J. C., Kemp D. J., Parker B. A., Reiser J., Renart J., Stark G. R., Wahl G. M. Detection of specific RNAs or specific fragments of DNA by fractionation in gels and transfer to diazobenzyloxymethyl paper. Methods Enzymol. 1979;68:220–242. doi: 10.1016/0076-6879(79)68017-5. [DOI] [PubMed] [Google Scholar]
- Baltimore D., Huang A. S. Interaction of HeLa cell proteins with RNA. J Mol Biol. 1970 Feb 14;47(3):263–273. doi: 10.1016/0022-2836(70)90301-3. [DOI] [PubMed] [Google Scholar]
- Bastos R. N., Aviv H. Globin RNA precursor molecules: biosynthesis and process in erythroid cells. Cell. 1977 Jul;11(3):641–650. doi: 10.1016/0092-8674(77)90081-2. [DOI] [PubMed] [Google Scholar]
- Beyer A. L., Christensen M. E., Walker B. W., LeStourgeon W. M. Identification and characterization of the packaging proteins of core 40S hnRNP particles. Cell. 1977 May;11(1):127–138. doi: 10.1016/0092-8674(77)90323-3. [DOI] [PubMed] [Google Scholar]
- Bhorjee J. S., Pederson T. Chromatin: its isolation from cultured mammalian cells with particular reference to contamination by nuclear ribnucleoprotein particles. Biochemistry. 1973 Jul 3;12(14):2766–2773. doi: 10.1021/bi00738a033. [DOI] [PubMed] [Google Scholar]
- Bhorjee J. S., Pederson T. Nonhistone chromosomal proteins in synchronized HeLa cells. Proc Natl Acad Sci U S A. 1972 Nov;69(11):3345–3349. doi: 10.1073/pnas.69.11.3345. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Busby S., Bakken A. A quantitative electron microscopic analysis of transcription in sea urchin embryos. Chromosoma. 1979 Mar 12;71(3):249–262. doi: 10.1007/BF00287135. [DOI] [PubMed] [Google Scholar]
- Calvet J. P., Pederson T. Heterogeneous nuclear RNA double-stranded regions probed in living HeLa cells by crosslinking with the psoralen derivative aminomethyltrioxsalen. Proc Natl Acad Sci U S A. 1979 Feb;76(2):755–759. doi: 10.1073/pnas.76.2.755. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Calvet J. P., Pederson T. Nucleoprotein organization of inverted repeat DNA transcripts in heterogeneous nuclear RNA-ribonucleoprotein particles from HeLa cells. J Mol Biol. 1978 Jul 5;122(3):361–378. doi: 10.1016/0022-2836(78)90195-x. [DOI] [PubMed] [Google Scholar]
- Calvet J. P., Pederson T. Photochemical cross-linking of secondary structure in HeLa cell heterogeneous nuclear RNA in situ 1. Nucleic Acids Res. 1979;6(5):1993–2001. doi: 10.1093/nar/6.5.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Calvet J. P., Pederson T. Secondary structure of heterogeneous nuclear RNA: two classes of double-stranded RNA in native ribonucleoprotein. Proc Natl Acad Sci U S A. 1977 Sep;74(9):3705–3709. doi: 10.1073/pnas.74.9.3705. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Firtel R. A., Pederson T. Ribonucleoprotein particles containing heterogeneous nuclear RNA in the cellular slime mold Dictyostelium discoideum. Proc Natl Acad Sci U S A. 1975 Jan;72(1):301–305. doi: 10.1073/pnas.72.1.301. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Girard M., Baltimore D. The effect of HeLa cell cytoplasm on the rate of sedimentation of RNA. Proc Natl Acad Sci U S A. 1966 Sep;56(3):999–1002. doi: 10.1073/pnas.56.3.999. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Karn J., Vidali G., Boffa L. C., Allfrey V. G. Characterization of the non-histone nuclear proteins associated with rapidly labeled heterogeneous nuclear RNA. J Biol Chem. 1977 Oct 25;252(20):7307–7322. [PubMed] [Google Scholar]
- Kinniburgh A. J., Mertz J. E., Ross J. The precursor of mouse beta-globin messenger RNA contains two intervening RNA sequences. Cell. 1978 Jul;14(3):681–693. doi: 10.1016/0092-8674(78)90251-9. [DOI] [PubMed] [Google Scholar]
- Kish V. M., Pederson T. Heterogeneous nuclear RNA secondary structure: oligo (U) sequences base-paired with poly (A) and their possible role as binding sites for heterogeneous nuclear RNA-specific proteins. Proc Natl Acad Sci U S A. 1977 Apr;74(4):1426–1430. doi: 10.1073/pnas.74.4.1426. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kish V. M., Pederson T. Isolation and characterization of ribonucleoprotein particles containing heterogeneous nuclear RNA. Methods Cell Biol. 1978;17:377–399. doi: 10.1016/s0091-679x(08)61155-3. [DOI] [PubMed] [Google Scholar]
- Kish V. M., Pederson T. Poly (A)-rich ribonucleoprotein complexes from HeLa cell messenger RNA. J Biol Chem. 1976 Oct 10;251(19):5888–5894. [PubMed] [Google Scholar]
- Kish V. M., Pederson T. Ribonucleoprotein organization of polyadenylate sequences in HeLa cell heterogeneous nuclear RNA. J Mol Biol. 1975 Jun 25;95(2):227–238. doi: 10.1016/0022-2836(75)90392-7. [DOI] [PubMed] [Google Scholar]
- Kumar A., Pederson T. Comparison of proteins bound to heterogeneous nuclear RNA and messenger RNA in HeLa cells. J Mol Biol. 1975 Aug 15;96(3):353–365. doi: 10.1016/0022-2836(75)90165-5. [DOI] [PubMed] [Google Scholar]
- Kumar A., Warner J. R. Characterization of ribosomal precursor particles from HeLa cell nucleoli. J Mol Biol. 1972 Jan 28;63(2):233–246. doi: 10.1016/0022-2836(72)90372-5. [DOI] [PubMed] [Google Scholar]
- Laird C. D., Chooi W. Y. Morphology of transcription units in Drosophila melanogaster. Chromosoma. 1976 Oct 28;58(2):193–218. doi: 10.1007/BF00701359. [DOI] [PubMed] [Google Scholar]
- Laird C. D., Wilkinson L. E., Foe V. E., Chooi W. Y. Analysis of chromatin-associated fiber arrays. Chromosoma. 1976 Oct 28;58(2):169–190. doi: 10.1007/BF00701357. [DOI] [PubMed] [Google Scholar]
- MAGGIO R., SIEKEVITZ P., PALADE G. E. STUDIES ON ISOLATED NUCLEI. II. ISOLATION AND CHEMICAL CHARACTERIZATION OF NUCLEOLAR AND NUCLEOPLASMIC SUBFRACTIONS. J Cell Biol. 1963 Aug;18:293–312. doi: 10.1083/jcb.18.2.293. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Malcolm D. B., Sommerville J. The structure of chromosome-derived ribonucleoprotein in oocytes of Triturus cristatus carnifex (Laurenti). Chromosoma. 1974;48(2):137–158. doi: 10.1007/BF00283960. [DOI] [PubMed] [Google Scholar]
- Martin T., Billings P., Levey A., Ozarslan S., Quinlan T., Swift H., Urbas L. Some properties of RNA:protein complexes from the nucleus of eukaryotic cells. Cold Spring Harb Symp Quant Biol. 1974;38:921–932. doi: 10.1101/sqb.1974.038.01.094. [DOI] [PubMed] [Google Scholar]
- McKnight S. L., Miller O. L., Jr Post-replicative nonribosomal transcription units in D. melanogaster embryos. Cell. 1979 Jul;17(3):551–563. doi: 10.1016/0092-8674(79)90263-0. [DOI] [PubMed] [Google Scholar]
- Monneron A., Bernhard W. Fine structural organization of the interphase nucleus in some mammalian cells. J Ultrastruct Res. 1969 May;27(3):266–288. doi: 10.1016/s0022-5320(69)80017-1. [DOI] [PubMed] [Google Scholar]
- Pederson T., Bhorjee J. S. Evidence for a role of RNA in eukaryotic chromosome structure. Metabolically stable, small nuclear RNA species are covalently linked to chromosomal DNA in HeLa cells. J Mol Biol. 1979 Mar 15;128(4):451–480. doi: 10.1016/0022-2836(79)90288-2. [DOI] [PubMed] [Google Scholar]
- Pederson T. Chromatin structure and gene transcription: nucleosomes permit a new synthesis. Int Rev Cytol. 1978;55:1–21. doi: 10.1016/s0074-7696(08)61884-7. [DOI] [PubMed] [Google Scholar]
- Pederson T. Gene activation in eukaryotes: are nuclear acidic proteins the cause or the effect? Proc Natl Acad Sci U S A. 1974 Mar;71(3):617–621. doi: 10.1073/pnas.71.3.617. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pederson T. Isolation and characterization of chromatin from the cellular slime mold, Dictyostelium discoideum. Biochemistry. 1977 Jun 14;16(12):2771–2777. doi: 10.1021/bi00631a029. [DOI] [PubMed] [Google Scholar]
- Pederson T., Kumar A. Relationship between protein synthesis and ribosome assembly in HeLa cells. J Mol Biol. 1971 Nov 14;61(3):655–668. doi: 10.1016/0022-2836(71)90070-2. [DOI] [PubMed] [Google Scholar]
- Pederson T. Proteins associated with heterogeneous nuclear RNA in eukaryotic cells. J Mol Biol. 1974 Feb 25;83(2):163–183. doi: 10.1016/0022-2836(74)90386-6. [DOI] [PubMed] [Google Scholar]
- Perry R. P., Cheng T. Y., Freed J. J., Greenberg J. R., Kelley D. E., Tartof K. D. Evolution of the transcription unit of ribosomal RNA. Proc Natl Acad Sci U S A. 1970 Mar;65(3):609–616. doi: 10.1073/pnas.65.3.609. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Perry R. P. THE CELLULAR SITES OF SYNTHESIS OF RIBOSOMAL AND 4S RNA. Proc Natl Acad Sci U S A. 1962 Dec;48(12):2179–2186. doi: 10.1073/pnas.48.12.2179. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
- Ross J., Knecht D. A. Precursors of alpha and beta globin messenger RNAs. J Mol Biol. 1978 Feb 15;119(1):1–20. doi: 10.1016/0022-2836(78)90266-8. [DOI] [PubMed] [Google Scholar]
- Samarina O. P., Lukanidin E. M., Molnar J., Georgiev G. P. Structural organization of nuclear complexes containing DNA-like RNA. J Mol Biol. 1968 Apr 14;33(1):251–263. doi: 10.1016/0022-2836(68)90292-1. [DOI] [PubMed] [Google Scholar]
- Smith K., Lingrel J. B. Sequence organization of the beta-globin mRNA precursor. Nucleic Acids Res. 1978 Sep;5(9):3295–3301. doi: 10.1093/nar/5.9.3295. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stevens B. J., Swift H. RNA transport from nucleus to cytoplasm in Chironomus salivary glands. J Cell Biol. 1966 Oct;31(1):55–77. doi: 10.1083/jcb.31.1.55. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thuring R. W., Sanders J. P., Borst P. A freeze-squeeze method for recovering long DNA from agarose gels. Anal Biochem. 1975 May 26;66(1):213–220. doi: 10.1016/0003-2697(75)90739-3. [DOI] [PubMed] [Google Scholar]
- Tilghman S. M., Curtis P. J., Tiemeier D. C., Leder P., Weissmann C. The intervening sequence of a mouse beta-globin gene is transcribed within the 15S beta-globin mRNA precursor. Proc Natl Acad Sci U S A. 1978 Mar;75(3):1309–1313. doi: 10.1073/pnas.75.3.1309. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tilghman S. M., Tiemeier D. C., Polsky F., Edgell M. H., Seidman J. G., Leder A., Enquist L. W., Norman B., Leder P. Cloning specific segments of the mammalian genome: bacteriophage lambda containing mouse globin and surrounding gene sequences. Proc Natl Acad Sci U S A. 1977 Oct;74(10):4406–4410. doi: 10.1073/pnas.74.10.4406. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilt F. H., Anderson M., Ekenberg E. Centrifugation of nuclear ribonucleoprotein particles of sea urchin embryos in cesium sulfate. Biochemistry. 1973 Feb 27;12(5):959–966. doi: 10.1021/bi00729a027. [DOI] [PubMed] [Google Scholar]