Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1988 Aug;170(8):3703–3710. doi: 10.1128/jb.170.8.3703-3710.1988

Transformation in Bacillus subtilis: involvement of the 17-kilodalton DNA-entry nuclease and the competence-specific 18-kilodalton protein.

B Vosman 1, G Kuiken 1, J Kooistra 1, G Venema 1
PMCID: PMC211348  PMID: 2841296

Abstract

A protein complex, consisting of a 17-kilodalton (kDa) nuclease and an 18-kDa protein, is believed to be involved in the binding and entry of donor DNA during transformation of Bacillus subtilis (H. Smith, K. Wiersman, S. Bron, and G. Venema, J. Bacteriol. 156:101-108, 1983). In this paper, the nucleotide sequences of the genes encoding both the nuclease and the 18-kDa protein are presented. The genes are encoded by a 904-base-pair PstI-HindIII fragment. The open reading frames encoding both proteins are partly overlapping. A B. subtilis mutant was constructed by insertion of a Cmr marker into the gene encoding the nuclease. This mutant lacked the competence-specific nuclease activity and the 18-kDa protein but retained 5% residual transformation. The total DNA association of the mutant was higher than that of the wild-type cells, and DNA entry was reduced to 30% of the wild-type level. These results suggest that an alternative pathway exists for the internalization of transforming DNA. A mutant, exclusively deficient for the 18-kDa protein, previously suggested to be involved in the binding of transforming DNA, was constructed by insertion of a kanamycin resistance gene into the coding sequence of the gene. Since the mutant showed wild-type DNA-binding activity, the 18-kDa protein is probably not involved in the binding of donor DNA to competent cells. The transforming activity of the mutant was reduced to 25% of the wild-type level, indicating that the 18-kDa protein has a function in the transformation process. In vitro experiments showed that the 18-kDa protein is capable of inhibiting the activity of the competence-specific nuclease. Its possible role in transformation is discussed.

Full text

PDF
3703

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Barberio C., Coppolecchia R., Mastromei G., Polsinelli M. Competence proteins in Bacillus subtilis com mutants. Biochim Biophys Acta. 1985 Oct 17;842(2-3):184–188. doi: 10.1016/0304-4165(85)90201-6. [DOI] [PubMed] [Google Scholar]
  2. Biswal N., Kleinschmidt A. K., Spatz H. C., Trautner T. A. Physical properties of the DNA of bacteriophage SP50. Mol Gen Genet. 1967;100(1):39–55. doi: 10.1007/BF00425774. [DOI] [PubMed] [Google Scholar]
  3. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  4. Bron S., Venema G. Ultraviolet inactivation and excision-repair in Bacillus subtilis. I. Construction and characterization of a transformable eightfold auxotrophic strain and two ultraviolet-sensitive derivatives. Mutat Res. 1972 May;15(1):1–10. doi: 10.1016/0027-5107(72)90086-3. [DOI] [PubMed] [Google Scholar]
  5. Cato A., Jr, Guild W. R. Transformation and DNA size. I. Activity of fragments of defined size and a fit to a random double cross-over model. J Mol Biol. 1968 Oct 14;37(1):157–178. doi: 10.1016/0022-2836(68)90080-6. [DOI] [PubMed] [Google Scholar]
  6. Fani R., Mastromei G., Polsinelli M., Venema G. Isolation and characterization of Bacillus subtilis mutants altered in competence. J Bacteriol. 1984 Jan;157(1):152–157. doi: 10.1128/jb.157.1.152-157.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Finn C. W., Jr, Landman O. E. Competence related proteins in the supernatant of competent cells of Bacillus subtilis. Mol Gen Genet. 1985;198(2):329–335. doi: 10.1007/BF00383015. [DOI] [PubMed] [Google Scholar]
  8. Frischauf A. M., Lehrach H., Poustka A., Murray N. Lambda replacement vectors carrying polylinker sequences. J Mol Biol. 1983 Nov 15;170(4):827–842. doi: 10.1016/s0022-2836(83)80190-9. [DOI] [PubMed] [Google Scholar]
  9. Iordănescu S. Recombinant plasmid obtained from two different, compatible staphylococcal plasmids. J Bacteriol. 1975 Nov;124(2):597–601. doi: 10.1128/jb.124.2.597-601.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Ish-Horowicz D., Burke J. F. Rapid and efficient cosmid cloning. Nucleic Acids Res. 1981 Jul 10;9(13):2989–2998. doi: 10.1093/nar/9.13.2989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Konings W. N., Bisschop A., Veenhuis M., Vermeulen C. A. New procedure for the isolation of membrane vesicles of Bacillus subtilis and an electron microscopy study of their ultrastructure. J Bacteriol. 1973 Dec;116(3):1456–1465. doi: 10.1128/jb.116.3.1456-1465.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  13. Mandel M., Higa A. Calcium-dependent bacteriophage DNA infection. J Mol Biol. 1970 Oct 14;53(1):159–162. doi: 10.1016/0022-2836(70)90051-3. [DOI] [PubMed] [Google Scholar]
  14. Mulder J. A., Venema G. Isolation and partial characterization of Bacillus subtilis mutants impaired in DNA entry. J Bacteriol. 1982 Apr;150(1):260–268. doi: 10.1128/jb.150.1.260-268.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Mulder J. A., Venema G. Transformation-deficient mutants of Bacillus subtilis impaired in competence-specific nuclease activities. J Bacteriol. 1982 Oct;152(1):166–174. doi: 10.1128/jb.152.1.166-174.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. O'Farrell P. H. High resolution two-dimensional electrophoresis of proteins. J Biol Chem. 1975 May 25;250(10):4007–4021. [PMC free article] [PubMed] [Google Scholar]
  17. Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
  18. Rosenberg M., Court D. Regulatory sequences involved in the promotion and termination of RNA transcription. Annu Rev Genet. 1979;13:319–353. doi: 10.1146/annurev.ge.13.120179.001535. [DOI] [PubMed] [Google Scholar]
  19. Rosenthal A. L., Lacks S. A. Complex structure of the membrane nuclease of Streptococcus pneumoniae revealed by two-dimensional electrophoresis. J Mol Biol. 1980 Aug 5;141(2):133–146. doi: 10.1016/0022-2836(80)90381-2. [DOI] [PubMed] [Google Scholar]
  20. Rosenthal A. L., Lacks S. A. Nuclease detection in SDS-polyacrylamide gel electrophoresis. Anal Biochem. 1977 May 15;80(1):76–90. doi: 10.1016/0003-2697(77)90627-3. [DOI] [PubMed] [Google Scholar]
  21. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Skinner M. K., Griswold M. D. Fluorographic detection of radioactivity in polyacrylamide gels with 2,5-diphenyloxazole in acetic acid and its comparison with existing procedures. Biochem J. 1983 Jan 1;209(1):281–284. doi: 10.1042/bj2090281. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Smith H., Wiersma K., Bron S., Venema G. Transformation in Bacillus subtilis: purification and partial characterization of a membrane-bound DNA-binding protein. J Bacteriol. 1983 Oct;156(1):101–108. doi: 10.1128/jb.156.1.101-108.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Smith H., Wiersma K., Venema G., Bron S. Transformation in Bacillus subtilis: a 75,000-dalton protein complex is involved in binding and entry of donor DNA. J Bacteriol. 1984 Mar;157(3):733–738. doi: 10.1128/jb.157.3.733-738.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Smith H., Wiersma K., Venema G., Bron S. Transformation in Bacillus subtilis: further characterization of a 75,000-dalton protein complex involved in binding and entry of donor DNA. J Bacteriol. 1985 Oct;164(1):201–206. doi: 10.1128/jb.164.1.201-206.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Smith H., de Vos W., Bron S. Transformation in Bacillus subtilis: properties of DNA-binding-deficient mutants. J Bacteriol. 1983 Jan;153(1):12–20. doi: 10.1128/jb.153.1.12-20.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Spizizen J. TRANSFORMATION OF BIOCHEMICALLY DEFICIENT STRAINS OF BACILLUS SUBTILIS BY DEOXYRIBONUCLEATE. Proc Natl Acad Sci U S A. 1958 Oct 15;44(10):1072–1078. doi: 10.1073/pnas.44.10.1072. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. VENEMA G., PRITCHARD R. H., VENEMA-SCHROEDER T. FATE OF TRANSFORMING DEOXYRIBONUCLEIC ACID IN BACILLUS SUBTILIS. J Bacteriol. 1965 May;89:1250–1255. doi: 10.1128/jb.89.5.1250-1255.1965. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Vieira J., Messing J. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene. 1982 Oct;19(3):259–268. doi: 10.1016/0378-1119(82)90015-4. [DOI] [PubMed] [Google Scholar]
  30. Vosman B., Kooistra J., Olijve J., Venema G. Cloning in Escherichia coli of the gene specifying the DNA-entry nuclease of Bacillus subtilis. Gene. 1987;52(2-3):175–183. doi: 10.1016/0378-1119(87)90044-8. [DOI] [PubMed] [Google Scholar]
  31. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
  32. de Vos W. M., Venema G. Fate of plasmid DNA in transformation of Bacillus subtilis protoplasts. Mol Gen Genet. 1981;182(1):39–43. doi: 10.1007/BF00422764. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES