Abstract
A 9.9-kilobase (kb) BamHI restriction endonuclease fragment encoding the catA and catBC gene clusters was selected from a gene bank of the Pseudomonas aeruginosa PAO1c chromosome. The catA, catB, and catC genes encode enzymes that catalyze consecutive reactions in the catechol branch of the beta-ketoadipate pathway: catA, catechol-1,2-dioxygenase (EC 1.13.11.1); catB, muconate lactonizing enzyme (EC 5.5.1.1); and catC, muconolactone isomerase (EC 5.3.3.4). A recombinant plasmid, pRO1783, which contains the 9.9-kb BamHI restriction fragment complemented P. aeruginosa mutants with lesions in the catA, catB, or catC gene; however, this fragment of chromosomal DNA did not contain any other catabolic genes which had been placed near the catA or catBC cluster based on cotransducibility of the loci. Restriction mapping, deletion subcloning, and complementation analysis showed that the order of the genes on the cloned chromosomal DNA fragment is catA, catB, catC. The catBC genes are tightly linked and are transcribed from a single promoter that is on the 5' side of the catB gene. The catA gene is approximately 3 kb from the catBC genes. The cloned P. aeruginosa catA, catB, and catC genes were expressed at basal levels in blocked mutants of Pseudomonas putida and did not exhibit an inducible response. These observations suggest positive regulation of the P. aeruginosa catA and catBC cluster, the absence of a positive regulatory element from pRO1783, and the inability of the P. putida regulatory gene product to induce expression of the P. aeruginosa catA, catB, and catC genes.
Full text
PDF







Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Aldrich T. L., Frantz B., Gill J. F., Kilbane J. J., Chakrabarty A. M. Cloning and complete nucleotide sequence determination of the catB gene encoding cis,cis-muconate lactonizing enzyme. Gene. 1987;52(2-3):185–195. doi: 10.1016/0378-1119(87)90045-x. [DOI] [PubMed] [Google Scholar]
- Avigad G., Englard S., Olsen B. R., Wolfenstein-Todel C., Wiggins R. Molecular properties of cis,cis-muconate cycloisomerase from Pseudomonas putida. J Mol Biol. 1974 Nov 15;89(4):651–662. doi: 10.1016/0022-2836(74)90042-4. [DOI] [PubMed] [Google Scholar]
- Bird J. A., Cain R. B. cis-cis-Muconate, the product inducer of catechol 1,2-oxygenase in Pseudomonas aeruginosa. Biochem J. 1968 Sep;109(3):479–481. doi: 10.1042/bj1090479. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Birnboim H. C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 1979 Nov 24;7(6):1513–1523. doi: 10.1093/nar/7.6.1513. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1016/0003-2697(76)90527-3. [DOI] [PubMed] [Google Scholar]
- Cuskey S. M., Peccoraro V., Olsen R. H. Initial catabolism of aromatic biogenic amines by Pseudomonas aeruginosa PAO: pathway description, mapping of mutations, and cloning of essential genes. J Bacteriol. 1987 Jun;169(6):2398–2404. doi: 10.1128/jb.169.6.2398-2404.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cuskey S. M., Wolff J. A., Phibbs P. V., Jr, Olsen R. H. Cloning of genes specifying carbohydrate catabolism in Pseudomonas aeruginosa and Pseudomonas putida. J Bacteriol. 1985 Jun;162(3):865–871. doi: 10.1128/jb.162.3.865-871.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cánovas J. L., Wheelis M. L., Stanier R. Y. Regulation of the enzymes of the beta-ketoadipate pathway in Moraxella calcoacetica. 2. The role of protocatechuate as inducer. Eur J Biochem. 1968 Jan;3(3):293–304. doi: 10.1111/j.1432-1033.1968.tb19529.x. [DOI] [PubMed] [Google Scholar]
- Evans W. C. Oxidation of phenol and benzoic acid by some soil bacteria. Biochem J. 1947;41(3):373–382. doi: 10.1042/bj0410373. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fujiwara M., Golovleva L. A., Saeki Y., Nozaki M., Hayaishi O. Extradiol cleavage of 3-substituted catechols by an intradiol dioxygenase, pyrocatechase, from a Pseudomonad. J Biol Chem. 1975 Jul 10;250(13):4848–4855. [PubMed] [Google Scholar]
- Ghosal D., You I. S., Chatterjee D. K., Chakrabarty A. M. Genes specifying degradation of 3-chlorobenzoic acid in plasmids pAC27 and pJP4. Proc Natl Acad Sci U S A. 1985 Mar;82(6):1638–1642. doi: 10.1073/pnas.82.6.1638. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Goldman A., Ollis D. L., Steitz T. A. Crystal structure of muconate lactonizing enzyme at 3 A resolution. J Mol Biol. 1987 Mar 5;194(1):143–153. doi: 10.1016/0022-2836(87)90723-6. [DOI] [PubMed] [Google Scholar]
- Hegeman G. D. Synthesis of the enzymes of the mandelate pathway by Pseudomonas putida. I. Synthesis of enzymes by the wild type. J Bacteriol. 1966 Mar;91(3):1140–1154. doi: 10.1128/jb.91.3.1140-1154.1966. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holloway B. W., Krishnapillai V., Morgan A. F. Chromosomal genetics of Pseudomonas. Microbiol Rev. 1979 Mar;43(1):73–102. doi: 10.1128/mr.43.1.73-102.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holloway B. W., Morgan A. F. Genome organization in Pseudomonas. Annu Rev Microbiol. 1986;40:79–105. doi: 10.1146/annurev.mi.40.100186.000455. [DOI] [PubMed] [Google Scholar]
- Ish-Horowicz D., Burke J. F. Rapid and efficient cosmid cloning. Nucleic Acids Res. 1981 Jul 10;9(13):2989–2998. doi: 10.1093/nar/9.13.2989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Katz B. A., Ollis D., Wyckoff H. W. Low resolution crystal structure of muconolactone isomerase. A decamer with a 5-fold symmetry axis. J Mol Biol. 1985 Jul 20;184(2):311–317. doi: 10.1016/0022-2836(85)90382-1. [DOI] [PubMed] [Google Scholar]
- Kemp M. B., Hegeman G. D. Genetic control of the beta-ketoadipate pathway in Pseudomonas aeruginosa. J Bacteriol. 1968 Nov;96(5):1488–1499. doi: 10.1128/jb.96.5.1488-1499.1968. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Meagher R. B., Ornston L. N. Relationships among enzymes of the beta-ketoadipate pathway. I. Properties of cis,cis-muconate-lactonizing enzyme and muconolactone isomerase from Pseudomonas putida. Biochemistry. 1973 Aug 28;12(18):3523–3530. doi: 10.1021/bi00742a027. [DOI] [PubMed] [Google Scholar]
- Morgan A. F., Dean H. F. Chromosomal map of Pseudomonas putida PPN, and a comparison of gene order with the Pseudomonas aeruginosa PAO chromosomal map. J Gen Microbiol. 1985 Apr;131(4):885–896. doi: 10.1099/00221287-131-4-885. [DOI] [PubMed] [Google Scholar]
- Nakai C., Kagamiyama H., Saeki Y., Nozaki M. Nonidentical subunits of pyrocatechase from Pseudomonas arvilla C-1. Arch Biochem Biophys. 1979 Jun;195(1):12–22. doi: 10.1016/0003-9861(79)90322-9. [DOI] [PubMed] [Google Scholar]
- Neidle E. L., Ornston L. N. Cloning and expression of Acinetobacter calcoaceticus catechol 1,2-dioxygenase structural gene catA in Escherichia coli. J Bacteriol. 1986 Nov;168(2):815–820. doi: 10.1128/jb.168.2.815-820.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nozaki M., Yoshida R., Nakai C., Iwaki M., Saeki Y. Subunit structure of nonheme iron-containing dioxygenases. Adv Exp Med Biol. 1976;74:127–136. doi: 10.1007/978-1-4684-3270-1_11. [DOI] [PubMed] [Google Scholar]
- Olsen R. H., DeBusscher G., McCombie W. R. Development of broad-host-range vectors and gene banks: self-cloning of the Pseudomonas aeruginosa PAO chromosome. J Bacteriol. 1982 Apr;150(1):60–69. doi: 10.1128/jb.150.1.60-69.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Olsen R. H., Shipley P. Host range and properties of the Pseudomonas aeruginosa R factor R1822. J Bacteriol. 1973 Feb;113(2):772–780. doi: 10.1128/jb.113.2.772-780.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ornston L. N., Parke D. The evolution of induction mechanisms in bacteria: insights derived from the study of the beta-ketoadipate pathway. Curr Top Cell Regul. 1977;12:209–262. doi: 10.1016/b978-0-12-152812-6.50011-1. [DOI] [PubMed] [Google Scholar]
- Ornston L. N. Regulation of catabolic pathways in Pseudomonas. Bacteriol Rev. 1971 Jun;35(2):87–116. doi: 10.1128/br.35.2.87-116.1971. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ornston L. N., Stanier R. Y. The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. J Biol Chem. 1966 Aug 25;241(16):3776–3786. [PubMed] [Google Scholar]
- Ornston L. N. The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. 3. Enzymes of the catechol pathway. J Biol Chem. 1966 Aug 25;241(16):3795–3799. [PubMed] [Google Scholar]
- Ornston L. N. The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. IV. Regulation. J Biol Chem. 1966 Aug 25;241(16):3800–3810. [PubMed] [Google Scholar]
- Parke D., Ornston L. N. Constitutive synthesis of enzymes of the protocatechuate pathway and of the beta-ketoadipate uptake system in mutant strains of Pseudomonas putida. J Bacteriol. 1976 Apr;126(1):272–281. doi: 10.1128/jb.126.1.272-281.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Que L., Jr The catechol dioxygenases. Adv Inorg Biochem. 1983;5:167–199. [PubMed] [Google Scholar]
- Rosenberg S. L., Hegeman G. D. Clustering of functionally related genes in Pseudomonas aeruginosa. J Bacteriol. 1969 Jul;99(1):353–355. doi: 10.1128/jb.99.1.353-355.1969. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rosenberg S. L., Hegeman G. D. Genetics of the mandelate pathway in Pseudomonas aeruginosa. J Bacteriol. 1971 Dec;108(3):1270–1276. doi: 10.1128/jb.108.3.1270-1276.1971. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stanier R. Y., Ornston L. N. The beta-ketoadipate pathway. Adv Microb Physiol. 1973;9(0):89–151. [PubMed] [Google Scholar]
- Wheelis M. L., Ornston L. N. Genetic control of enzyme induction in the -ketoadipate pathway of Pseudomonas putida: deletion mapping of cat mutations. J Bacteriol. 1972 Feb;109(2):790–795. doi: 10.1128/jb.109.2.790-795.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wheelis M. L., Stanier R. Y. The genetic control of dissimilatory pathways in Pseudomonas putida. Genetics. 1970 Oct;66(2):245–266. doi: 10.1093/genetics/66.2.245. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Worsey M. J., Williams P. A. Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid. J Bacteriol. 1975 Oct;124(1):7–13. doi: 10.1128/jb.124.1.7-13.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]