Abstract
Streptomyces avermitilis contains a unique restriction system that restricts plasmid DNA containing N6-methyladenine or 5-methylcytosine. Shuttle vectors isolated from Escherichia coli RR1 or plasmids isolated from modification-proficient Streptomyces spp. cannot be directly introduced into S. avermitilis. This restriction barrier can be overcome by first transferring plasmids into Streptomyces lividans or a modification-deficient E. coli strain and then into S. avermitilis. The transformation frequency was reduced greater than 1,000-fold when plasmid DNA was modified by dam or TaqI methylases to contain N6-methyladenine or by AluI, HhaI, HphI methylases to contain 5-methylcytosine. Methyl-specific restriction appears to be common in Streptomyces spp., since either N6-methyladenine-specific or 5-methylcytosine-specific restriction was observed in seven of nine strains tested.
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- Bailey C. R., Winstanley D. J. Inhibition of restriction in Streptomyces clavuligerus by heat treatment. J Gen Microbiol. 1986 Oct;132(10):2945–2947. doi: 10.1099/00221287-132-10-2945. [DOI] [PubMed] [Google Scholar]
- Bolivar F., Rodriguez R. L., Greene P. J., Betlach M. C., Heyneker H. L., Boyer H. W., Crosa J. H., Falkow S. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene. 1977;2(2):95–113. [PubMed] [Google Scholar]
- Brooks J. E., Blumenthal R. M., Gingeras T. R. The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene. Nucleic Acids Res. 1983 Feb 11;11(3):837–851. doi: 10.1093/nar/11.3.837. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Burg R. W., Miller B. M., Baker E. E., Birnbaum J., Currie S. A., Hartman R., Kong Y. L., Monaghan R. L., Olson G., Putter I. Avermectins, new family of potent anthelmintic agents: producing organism and fermentation. Antimicrob Agents Chemother. 1979 Mar;15(3):361–367. doi: 10.1128/aac.15.3.361. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Butkus V., Klimasauskas S., Kersulyte D., Vaitkevicius D., Lebionka A., Janulaitis A. Investigation of restriction-modification enzymes from M. varians RFL19 with a new type of specificity toward modification of substrate. Nucleic Acids Res. 1985 Aug 26;13(16):5727–5746. doi: 10.1093/nar/13.16.5727. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clewell D. B., Helinski D. R. Effect of growth conditions on the formation of the relaxation complex of supercoiled ColE1 deoxyribonucleic acid and protein in Escherichia coli. J Bacteriol. 1972 Jun;110(3):1135–1146. doi: 10.1128/jb.110.3.1135-1146.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cox K. L., Baltz R. H. Restriction of bacteriophage plaque formation in Streptomyces spp. J Bacteriol. 1984 Aug;159(2):499–504. doi: 10.1128/jb.159.2.499-504.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ehrlich M., Wilson G. G., Kuo K. C., Gehrke C. W. N4-methylcytosine as a minor base in bacterial DNA. J Bacteriol. 1987 Mar;169(3):939–943. doi: 10.1128/jb.169.3.939-943.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Foor F., Roberts G. P., Morin N., Snyder L., Hwang M., Gibbons P. H., Paradiso M. J., Stotish R. L., Ruby C. L., Wolanski B. Isolation and characterization of the Streptomyces cattleya temperate phage TG1. Gene. 1985;39(1):11–16. doi: 10.1016/0378-1119(85)90101-5. [DOI] [PubMed] [Google Scholar]
- Holmes D. S., Quigley M. A rapid boiling method for the preparation of bacterial plasmids. Anal Biochem. 1981 Jun;114(1):193–197. doi: 10.1016/0003-2697(81)90473-5. [DOI] [PubMed] [Google Scholar]
- Hopwood D. A., Kieser T., Wright H. M., Bibb M. J. Plasmids, recombination and chromosome mapping in Streptomyces lividans 66. J Gen Microbiol. 1983 Jul;129(7):2257–2269. doi: 10.1099/00221287-129-7-2257. [DOI] [PubMed] [Google Scholar]
- Hopwood D. A., Malpartida F., Kieser H. M., Ikeda H., Duncan J., Fujii I., Rudd B. A., Floss H. G., Omura S. Production of 'hybrid' antibiotics by genetic engineering. Nature. 1985 Apr 18;314(6012):642–644. doi: 10.1038/314642a0. [DOI] [PubMed] [Google Scholar]
- Jones M. D., Mabe J. A., Nakatsukasa W. M., Fayerman J. T. pFJ265, a new cloning vehicle for Streptomyces. Plasmid. 1984 Jan;11(1):92–95. doi: 10.1016/0147-619x(84)90011-8. [DOI] [PubMed] [Google Scholar]
- Kessler C., Höltke H. J. Specificity of restriction endonucleases and methylases--a review. Gene. 1986;47(1):1–153. doi: 10.1016/0378-1119(86)90245-3. [DOI] [PubMed] [Google Scholar]
- Kieser T., Hopwood D. A., Wright H. M., Thompson C. J. pIJ101, a multi-copy broad host-range Streptomyces plasmid: functional analysis and development of DNA cloning vectors. Mol Gen Genet. 1982;185(2):223–228. doi: 10.1007/BF00330791. [DOI] [PubMed] [Google Scholar]
- Lacks S., Greenberg B. Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation. J Mol Biol. 1977 Jul;114(1):153–168. doi: 10.1016/0022-2836(77)90289-3. [DOI] [PubMed] [Google Scholar]
- Larson J. L., Hershberger C. L. Shuttle vectors for cloning recombinant DNA in Escherichia coli and Streptomyces griseofuscus C581. J Bacteriol. 1984 Jan;157(1):314–317. doi: 10.1128/jb.157.1.314-317.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Larson J. L., Hershberger C. L. The minimal replicon of a streptomycete plasmid produces an ultrahigh level of plasmid DNA. Plasmid. 1986 May;15(3):199–209. doi: 10.1016/0147-619x(86)90038-7. [DOI] [PubMed] [Google Scholar]
- MacNeil T., Gibbons P. H. Characterization of the Streptomyces plasmid pVE1. Plasmid. 1986 Nov;16(3):182–194. doi: 10.1016/0147-619x(86)90056-9. [DOI] [PubMed] [Google Scholar]
- Matsushima P., Cox K. L., Baltz R. H. Highly transformable mutants of Streptomyces fradiae defective in several restriction systems. Mol Gen Genet. 1987 Mar;206(3):393–400. doi: 10.1007/BF00428877. [DOI] [PubMed] [Google Scholar]
- Okanishi M., Suzuki K., Umezawa H. Formation and reversion of Streptomycete protoplasts: cultural condition and morphological study. J Gen Microbiol. 1974 Feb;80(2):389–400. doi: 10.1099/00221287-80-2-389. [DOI] [PubMed] [Google Scholar]
- Paradiso M. J., Roberts G., Streicher S. L., Goldberg R. B. Characterization of suppressible mutations in the viomycin phosphotransferase gene of the Streptomyces enteric plasmid pVE138. J Bacteriol. 1987 Mar;169(3):1325–1327. doi: 10.1128/jb.169.3.1325-1327.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Raleigh E. A., Wilson G. Escherichia coli K-12 restricts DNA containing 5-methylcytosine. Proc Natl Acad Sci U S A. 1986 Dec;83(23):9070–9074. doi: 10.1073/pnas.83.23.9070. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roberts R. J. Restriction and modification enzymes and their recognition sequences. Nucleic Acids Res. 1985;13 (Suppl):r165–r200. doi: 10.1093/nar/13.suppl.r165. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rodicio M. R., Bruton C. J., Chater K. F. New derivatives of the Streptomyces temperate phage phi C31 useful for the cloning and functional analysis of Streptomyces DNA. Gene. 1985;34(2-3):283–292. doi: 10.1016/0378-1119(85)90137-4. [DOI] [PubMed] [Google Scholar]
- Russell D. W., Zinder N. D. Hemimethylation prevents DNA replication in E. coli. Cell. 1987 Sep 25;50(7):1071–1079. doi: 10.1016/0092-8674(87)90173-5. [DOI] [PubMed] [Google Scholar]
- Sladek T. L., Nowak J. A., Maniloff J. Mycoplasma restriction: identification of a new type of restriction specificity for DNA containing 5-methylcytosine. J Bacteriol. 1986 Jan;165(1):219–225. doi: 10.1128/jb.165.1.219-225.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sànchez J., Barbès C., Hernandez A., de los Reyes Gavilàn C. R., Hardisson C. Restriction-modification systems in Streptomyces antibioticus. Can J Microbiol. 1985 Oct;31(10):942–946. doi: 10.1139/m85-177. [DOI] [PubMed] [Google Scholar]
- Thompson C. J., Kieser T., Ward J. M., Hopwood D. A. Physical analysis of antibiotic-resistance genes from Streptomyces and their use in vector construction. Gene. 1982 Nov;20(1):51–62. doi: 10.1016/0378-1119(82)90086-5. [DOI] [PubMed] [Google Scholar]
- Thompson C. J., Ward J. M., Hopwood D. A. Cloning of antibiotic resistance and nutritional genes in streptomycetes. J Bacteriol. 1982 Aug;151(2):668–677. doi: 10.1128/jb.151.2.668-677.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]