Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1987 Feb;169(2):751–757. doi: 10.1128/jb.169.2.751-757.1987

Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure.

A Ben-Bassat, K Bauer, S Y Chang, K Myambo, A Boosman, S Chang
PMCID: PMC211843  PMID: 3027045

Abstract

Methionine aminopeptidase (MAP) catalyzes the removal of amino-terminal methionine from proteins. The Escherichia coli map gene encoding this enzyme was cloned; it consists of 264 codons and encodes a monomeric enzyme of 29,333 daltons. In vitro analyses with purified enzyme indicated that MAP is a metallo-oligopeptidase with absolute specificity for the amino-terminal methionine. The methionine residues from the amino-terminal end of the recombinant proteins interleukin-2 (Met-Ala-Pro-IL-2) and ricin A (Met-Ile-Phe-ricin A) could be removed either in vitro with purified MAP enzyme or in vivo in MAP-hyperproducing strains of E. coli. In vitro analyses of the substrate preference of the E. coli MAP indicated that the residues adjacent to the initiation methionine could significantly influence the methionine cleavage process. This conclusion is consistent, in general, with the deduced specificity of the enzyme based on the analysis of known amino-terminal sequences of intracellular proteins (S. Tsunasawa, J. W. Stewart, and F. Sherman, J. Biol. Chem. 260:5382-5391, 1985).

Full text

PDF
751

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Adams J. M. On the release of the formyl group from nascent protein. J Mol Biol. 1968 May 14;33(3):571–589. doi: 10.1016/0022-2836(68)90307-0. [DOI] [PubMed] [Google Scholar]
  2. Ball L. A., Kaesberg P. Cleavage of the N-terminal formylmethionine residue from a bacteriophage coat protein in vitro. J Mol Biol. 1973 Sep 25;79(3):531–537. doi: 10.1016/0022-2836(73)90404-x. [DOI] [PubMed] [Google Scholar]
  3. Boissel J. P., Kasper T. J., Shah S. C., Malone J. I., Bunn H. F. Amino-terminal processing of proteins: hemoglobin South Florida, a variant with retention of initiator methionine and N alpha-acetylation. Proc Natl Acad Sci U S A. 1985 Dec;82(24):8448–8452. doi: 10.1073/pnas.82.24.8448. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Capecchi M. R. Initiation of E. coli proteins. Proc Natl Acad Sci U S A. 1966 Jun;55(6):1517–1524. doi: 10.1073/pnas.55.6.1517. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Carter T. H., Miller C. G. Aspartate-specific peptidases in Salmonella typhimurium: mutants deficient in peptidase E. J Bacteriol. 1984 Aug;159(2):453–459. doi: 10.1128/jb.159.2.453-459.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Chang A. C., Cohen S. N. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J Bacteriol. 1978 Jun;134(3):1141–1156. doi: 10.1128/jb.134.3.1141-1156.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Hayashi S., Chang S. Y., Chang S., Wu H. C. Modification and processing of Bacillus licheniformis prepenicillinase in Escherichia coli. Fate of mutant penicillinase lacking lipoprotein modification site. J Biol Chem. 1984 Aug 25;259(16):10448–10454. [PubMed] [Google Scholar]
  8. Hermsdorf C. L. Tripeptide-specific aminopeptidase from Escherichia coli AJ005. Biochemistry. 1978 Aug 8;17(16):3370–3376. doi: 10.1021/bi00609a030. [DOI] [PubMed] [Google Scholar]
  9. Housman D., Gillespie D., Lodish H. F. Removal of formyl-methionine residue from nascent bacteriophage f2 protein. J Mol Biol. 1972 Mar 14;65(1):163–166. doi: 10.1016/0022-2836(72)90498-6. [DOI] [PubMed] [Google Scholar]
  10. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  11. Levitt M. A simplified representation of protein conformations for rapid simulation of protein folding. J Mol Biol. 1976 Jun 14;104(1):59–107. doi: 10.1016/0022-2836(76)90004-8. [DOI] [PubMed] [Google Scholar]
  12. McHugh G. L., Miller C. G. Isolation and characterization of proline peptidase mutants of Salmonella typhimurium. J Bacteriol. 1974 Oct;120(1):364–371. doi: 10.1128/jb.120.1.364-371.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. McLaughlin J. R., Chang S. Y., Chang S. Transcriptional analyses of the Bacillus licheniformis penP gene. Nucleic Acids Res. 1982 Jul 10;10(13):3905–3919. doi: 10.1093/nar/10.13.3905. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. McLaughlin J. R., Wong H. C., Ting Y. E., Van Arsdell J. N., Chang S. Control of lysogeny and immunity of Bacillus subtilis temperate bacteriophage SP beta by its d gene. J Bacteriol. 1986 Sep;167(3):952–959. doi: 10.1128/jb.167.3.952-959.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Merrifield B. Solid phase synthesis. Nobel lecture, 8 December 1984. Biosci Rep. 1985 May;5(5):353–376. doi: 10.1007/BF01116553. [DOI] [PubMed] [Google Scholar]
  16. Merrifield R. B. Solid-phase peptide synthesis. Adv Enzymol Relat Areas Mol Biol. 1969;32:221–296. doi: 10.1002/9780470122778.ch6. [DOI] [PubMed] [Google Scholar]
  17. Meselson M., Yuan R. DNA restriction enzyme from E. coli. Nature. 1968 Mar 23;217(5134):1110–1114. doi: 10.1038/2171110a0. [DOI] [PubMed] [Google Scholar]
  18. Messing J., Vieira J. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments. Gene. 1982 Oct;19(3):269–276. doi: 10.1016/0378-1119(82)90016-6. [DOI] [PubMed] [Google Scholar]
  19. Michaelis S., Guarente L., Beckwith J. In vitro construction and characterization of phoA-lacZ gene fusions in Escherichia coli. J Bacteriol. 1983 Apr;154(1):356–365. doi: 10.1128/jb.154.1.356-365.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Miller C. G., Mackinnon K. Peptidase mutants of Salmonella typhimurium. J Bacteriol. 1974 Oct;120(1):355–363. doi: 10.1128/jb.120.1.355-363.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Miller C. G., Schwartz G. Peptidase-deficient mutants of Escherichia coli. J Bacteriol. 1978 Aug;135(2):603–611. doi: 10.1128/jb.135.2.603-611.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Pine M. J. Kinetics of maturation of the amino termini of the cell proteins of Escherichia coli. Biochim Biophys Acta. 1969 Jan 21;174(1):359–372. doi: 10.1016/0005-2787(69)90261-5. [DOI] [PubMed] [Google Scholar]
  23. Rosenberg M., Court D. Regulatory sequences involved in the promotion and termination of RNA transcription. Annu Rev Genet. 1979;13:319–353. doi: 10.1146/annurev.ge.13.120179.001535. [DOI] [PubMed] [Google Scholar]
  24. Rosenberg S. A., Grimm E. A., McGrogan M., Doyle M., Kawasaki E., Koths K., Mark D. F. Biological activity of recombinant human interleukin-2 produced in Escherichia coli. Science. 1984 Mar 30;223(4643):1412–1414. doi: 10.1126/science.6367046. [DOI] [PubMed] [Google Scholar]
  25. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Sherman F., Stewart J. W., Tsunasawa S. Methionine or not methionine at the beginning of a protein. Bioessays. 1985 Jul;3(1):27–31. doi: 10.1002/bies.950030108. [DOI] [PubMed] [Google Scholar]
  27. Simmonds S. Garvan Award address of the American Chemical Society: peptidase activity and peptide metabolism in Escherichia coli K-12. Biochemistry. 1970 Jan 6;9(1):1–9. doi: 10.1021/bi00803a001. [DOI] [PubMed] [Google Scholar]
  28. Simmonds S., Szeto K. S., Fletterick C. G. Soluble tri- and dipeptidases in Escherichia coli K-12+. Biochemistry. 1976 Jan 27;15(2):261–271. doi: 10.1021/bi00647a004. [DOI] [PubMed] [Google Scholar]
  29. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  30. Strauch K. L., Miller C. G. Isolation and characterization Salmonella typhimurium mutants lacking a tripeptidase (peptidase T). J Bacteriol. 1983 May;154(2):763–771. doi: 10.1128/jb.154.2.763-771.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Takeda M., Webster R. E. Protein chain initiation and deformylation in B. subtilis homogenates. Proc Natl Acad Sci U S A. 1968 Aug;60(4):1487–1494. doi: 10.1073/pnas.60.4.1487. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Tsunasawa S., Stewart J. W., Sherman F. Amino-terminal processing of mutant forms of yeast iso-1-cytochrome c. The specificities of methionine aminopeptidase and acetyltransferase. J Biol Chem. 1985 May 10;260(9):5382–5391. [PubMed] [Google Scholar]
  33. VOGEL H. J., BONNER D. M. Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem. 1956 Jan;218(1):97–106. [PubMed] [Google Scholar]
  34. Vimr E. R., Green L., Miller C. G. Oligopeptidase-deficient mutants of Salmonella typhimurium. J Bacteriol. 1983 Mar;153(3):1259–1265. doi: 10.1128/jb.153.3.1259-1265.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Vimr E. R., Miller C. G. Dipeptidyl carboxypeptidase-deficient mutants of Salmonella typhimurium. J Bacteriol. 1983 Mar;153(3):1252–1258. doi: 10.1128/jb.153.3.1252-1258.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. WALLER J. P. THE NH2-TERMINAL RESIDUES OF THE PROTEINS FROM CELL-FREE EXTRACTS OF E. COLI. J Mol Biol. 1963 Nov;7:483–496. doi: 10.1016/s0022-2836(63)80096-0. [DOI] [PubMed] [Google Scholar]
  37. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]
  38. Yoshida A., Lin M. NH 2 -terminal formylmethionine- and NH 2 -terminal methionine-cleaving enzymes in rabbits. J Biol Chem. 1972 Feb 10;247(3):952–957. [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES