Skip to main content
The Journal of Cell Biology logoLink to The Journal of Cell Biology
. 1994 Oct 2;127(2):411–423. doi: 10.1083/jcb.127.2.411

Cryo-electron microscopy and three-dimensional reconstruction of the calcium release channel/ryanodine receptor from skeletal muscle

PMCID: PMC2120200  PMID: 7929585

Abstract

The calcium release channel (CRC) from skeletal muscle is an unusually large tetrameric ion channel of the sarcoplasmic reticulum, and it is a major component of the triad junction, the site of excitation contraction coupling. The three-dimensional architecture of the CRC was determined from a random conical tilt series of images extracted from electron micrographs of isolated detergent-solubilized channels prepared in a frozen-hydrated state. Three major classes of fourfold symmetric images were identified, and three-dimensional reconstructions were determined for two of these. The two independent reconstructions were almost identical, being related to each other by a 180 degrees rotation about an axis in the plane of the specimen grid. The CRC consists of a large cytoplasmic assembly (29 x 29 x 12 nm) and a smaller transmembrane assembly that protrudes 7 nm from one of its faces. A cylindrical low-density region, 2-3 nm in apparent diameter, extends down the center of the transmembrane assembly, and possibly corresponds to the transmembrane Ca(2+)-conducting pathway. At its cytoplasmic end this channel-like feature appears to be plugged by a globular mass of density. The cytoplasmic assembly is apparently constructed from 10 or more domains that are loosely packed together such that greater than 50% of the volume enveloped by the assembly is occupied by solvent. The cytoplasmic assembly is suggestive of a scaffolding and seems well adapted to maintain the structural integrity of the triad junction while allowing ions to freely diffuse to and away from the transmembrane assembly.

Full Text

The Full Text of this article is available as a PDF (4.2 MB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Block B. A., Imagawa T., Campbell K. P., Franzini-Armstrong C. Structural evidence for direct interaction between the molecular components of the transverse tubule/sarcoplasmic reticulum junction in skeletal muscle. J Cell Biol. 1988 Dec;107(6 Pt 2):2587–2600. doi: 10.1083/jcb.107.6.2587. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Booy F. P., Pawley J. B. Cryo-crinkling: what happens to carbon films on copper grids at low temperature. Ultramicroscopy. 1993 Mar;48(3):273–280. doi: 10.1016/0304-3991(93)90101-3. [DOI] [PubMed] [Google Scholar]
  3. Brillantes A. B., Ondrias K., Scott A., Kobrinsky E., Ondriasová E., Moschella M. C., Jayaraman T., Landers M., Ehrlich B. E., Marks A. R. Stabilization of calcium release channel (ryanodine receptor) function by FK506-binding protein. Cell. 1994 May 20;77(4):513–523. doi: 10.1016/0092-8674(94)90214-3. [DOI] [PubMed] [Google Scholar]
  4. Carazo J. M., Carrascosa J. L. Restoration of direct Fourier three-dimensional reconstructions of crystalline specimens by the method of convex projections. J Microsc. 1987 Feb;145(Pt 2):159–177. [PubMed] [Google Scholar]
  5. Caswell A. H., Brandt N. R., Brunschwig J. P., Purkerson S. Localization and partial characterization of the oligomeric disulfide-linked molecular weight 95,000 protein (triadin) which binds the ryanodine and dihydropyridine receptors in skeletal muscle triadic vesicles. Biochemistry. 1991 Jul 30;30(30):7507–7513. doi: 10.1021/bi00244a020. [DOI] [PubMed] [Google Scholar]
  6. Caswell A. H., Brandt N. R. Does muscle activation occur by direct mechanical coupling of transverse tubules to sarcoplasmic reticulum? Trends Biochem Sci. 1989 May;14(5):161–165. doi: 10.1016/0968-0004(89)90265-X. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Catterall W. A. Excitation-contraction coupling in vertebrate skeletal muscle: a tale of two calcium channels. Cell. 1991 Mar 8;64(5):871–874. doi: 10.1016/0092-8674(91)90309-m. [DOI] [PubMed] [Google Scholar]
  8. Chiu W. What does electron cryomicroscopy provide that X-ray crystallography and NMR spectroscopy cannot? Annu Rev Biophys Biomol Struct. 1993;22:233–255. doi: 10.1146/annurev.bb.22.060193.001313. [DOI] [PubMed] [Google Scholar]
  9. Cyrklaff M., Adrian M., Dubochet J. Evaporation during preparation of unsupported thin vitrified aqueous layers for cryo-electron microscopy. J Electron Microsc Tech. 1990 Dec;16(4):351–355. doi: 10.1002/jemt.1060160407. [DOI] [PubMed] [Google Scholar]
  10. Downing K. H., Glaeser R. M. Improvement in high resolution image quality of radiation-sensitive specimens achieved with reduced spot size of the electron beam. Ultramicroscopy. 1986;20(3):269–278. doi: 10.1016/0304-3991(86)90191-9. [DOI] [PubMed] [Google Scholar]
  11. Ferguson D. G., Schwartz H. W., Franzini-Armstrong C. Subunit structure of junctional feet in triads of skeletal muscle: a freeze-drying, rotary-shadowing study. J Cell Biol. 1984 Nov;99(5):1735–1742. doi: 10.1083/jcb.99.5.1735. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Fleischer S., Inui M. Biochemistry and biophysics of excitation-contraction coupling. Annu Rev Biophys Biophys Chem. 1989;18:333–364. doi: 10.1146/annurev.bb.18.060189.002001. [DOI] [PubMed] [Google Scholar]
  13. Frank J., Bretaudiere J. P., Carazo J. M., Verschoor A., Wagenknecht T. Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli. J Microsc. 1988 May;150(Pt 2):99–115. doi: 10.1111/j.1365-2818.1988.tb04602.x. [DOI] [PubMed] [Google Scholar]
  14. Frank J. Classification of macromolecular assemblies studied as 'single particles'. Q Rev Biophys. 1990 Aug;23(3):281–329. doi: 10.1017/s0033583500005564. [DOI] [PubMed] [Google Scholar]
  15. Frank J., Radermacher M. Three-dimensional reconstruction of single particles negatively stained or in vitreous ice. Ultramicroscopy. 1992 Oct;46(1-4):241–262. doi: 10.1016/0304-3991(92)90018-f. [DOI] [PubMed] [Google Scholar]
  16. Frank J., Verschoor A., Boublik M. Computer averaging of electron micrographs of 40S ribosomal subunits. Science. 1981 Dec 18;214(4527):1353–1355. doi: 10.1126/science.7313694. [DOI] [PubMed] [Google Scholar]
  17. Frank J., van Heel M. Correspondence analysis of aligned images of biological particles. J Mol Biol. 1982 Oct 15;161(1):134–137. doi: 10.1016/0022-2836(82)90282-0. [DOI] [PubMed] [Google Scholar]
  18. Franzini-Armstrong C., Nunzi G. Junctional feet and particles in the triads of a fast-twitch muscle fibre. J Muscle Res Cell Motil. 1983 Apr;4(2):233–252. doi: 10.1007/BF00712033. [DOI] [PubMed] [Google Scholar]
  19. Franzini-Armstrong C. Structure of sarcoplasmic reticulum. Fed Proc. 1980 May 15;39(7):2403–2409. [PubMed] [Google Scholar]
  20. Glaeser R. M. Specimen flatness of thin crystalline arrays: influence of the substrate. Ultramicroscopy. 1992 Oct;46(1-4):33–43. doi: 10.1016/0304-3991(92)90006-6. [DOI] [PubMed] [Google Scholar]
  21. Hymel L., Inui M., Fleischer S., Schindler H. Purified ryanodine receptor of skeletal muscle sarcoplasmic reticulum forms Ca2+-activated oligomeric Ca2+ channels in planar bilayers. Proc Natl Acad Sci U S A. 1988 Jan;85(2):441–445. doi: 10.1073/pnas.85.2.441. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Imagawa T., Smith J. S., Coronado R., Campbell K. P. Purified ryanodine receptor from skeletal muscle sarcoplasmic reticulum is the Ca2+-permeable pore of the calcium release channel. J Biol Chem. 1987 Dec 5;262(34):16636–16643. [PubMed] [Google Scholar]
  23. Inui M., Saito A., Fleischer S. Purification of the ryanodine receptor and identity with feet structures of junctional terminal cisternae of sarcoplasmic reticulum from fast skeletal muscle. J Biol Chem. 1987 Feb 5;262(4):1740–1747. [PubMed] [Google Scholar]
  24. Jayaraman T., Brillantes A. M., Timerman A. P., Fleischer S., Erdjument-Bromage H., Tempst P., Marks A. R. FK506 binding protein associated with the calcium release channel (ryanodine receptor). J Biol Chem. 1992 May 15;267(14):9474–9477. [PubMed] [Google Scholar]
  25. Lai F. A., Erickson H. P., Rousseau E., Liu Q. Y., Meissner G. Purification and reconstitution of the calcium release channel from skeletal muscle. Nature. 1988 Jan 28;331(6154):315–319. doi: 10.1038/331315a0. [DOI] [PubMed] [Google Scholar]
  26. Lu X., Xu L., Meissner G. Activation of the skeletal muscle calcium release channel by a cytoplasmic loop of the dihydropyridine receptor. J Biol Chem. 1994 Mar 4;269(9):6511–6516. [PubMed] [Google Scholar]
  27. Marty I., Robert M., Villaz M., De Jongh K., Lai Y., Catterall W. A., Ronjat M. Biochemical evidence for a complex involving dihydropyridine receptor and ryanodine receptor in triad junctions of skeletal muscle. Proc Natl Acad Sci U S A. 1994 Mar 15;91(6):2270–2274. doi: 10.1073/pnas.91.6.2270. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. McPherson P. S., Campbell K. P. The ryanodine receptor/Ca2+ release channel. J Biol Chem. 1993 Jul 5;268(19):13765–13768. [PubMed] [Google Scholar]
  29. Numa S., Tanabe T., Takeshima H., Mikami A., Niidome T., Nishimura S., Adams B. A., Beam K. G. Molecular insights into excitation-contraction coupling. Cold Spring Harb Symp Quant Biol. 1990;55:1–7. doi: 10.1101/sqb.1990.055.01.003. [DOI] [PubMed] [Google Scholar]
  30. Radermacher M. Three-dimensional reconstruction of single particles from random and nonrandom tilt series. J Electron Microsc Tech. 1988 Aug;9(4):359–394. doi: 10.1002/jemt.1060090405. [DOI] [PubMed] [Google Scholar]
  31. Radermacher M., Wagenknecht T., Grassucci R., Frank J., Inui M., Chadwick C., Fleischer S. Cryo-EM of the native structure of the calcium release channel/ryanodine receptor from sarcoplasmic reticulum. Biophys J. 1992 Apr;61(4):936–940. doi: 10.1016/S0006-3495(92)81900-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Radermacher M., Wagenknecht T., Verschoor A., Frank J. Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli. J Microsc. 1987 May;146(Pt 2):113–136. doi: 10.1111/j.1365-2818.1987.tb01333.x. [DOI] [PubMed] [Google Scholar]
  33. Ríos E., Pizarro G., Stefani E. Charge movement and the nature of signal transduction in skeletal muscle excitation-contraction coupling. Annu Rev Physiol. 1992;54:109–133. doi: 10.1146/annurev.ph.54.030192.000545. [DOI] [PubMed] [Google Scholar]
  34. Ríos E., Pizarro G. Voltage sensor of excitation-contraction coupling in skeletal muscle. Physiol Rev. 1991 Jul;71(3):849–908. doi: 10.1152/physrev.1991.71.3.849. [DOI] [PubMed] [Google Scholar]
  35. Saito A., Inui M., Radermacher M., Frank J., Fleischer S. Ultrastructure of the calcium release channel of sarcoplasmic reticulum. J Cell Biol. 1988 Jul;107(1):211–219. doi: 10.1083/jcb.107.1.211. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Saito A., Seiler S., Chu A., Fleischer S. Preparation and morphology of sarcoplasmic reticulum terminal cisternae from rabbit skeletal muscle. J Cell Biol. 1984 Sep;99(3):875–885. doi: 10.1083/jcb.99.3.875. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Saxton W. O., Baumeister W. The correlation averaging of a regularly arranged bacterial cell envelope protein. J Microsc. 1982 Aug;127(Pt 2):127–138. doi: 10.1111/j.1365-2818.1982.tb00405.x. [DOI] [PubMed] [Google Scholar]
  38. Sezan M. I., Stark H. Image restoration by the method of convex projections: part 2 applications and numerical results. IEEE Trans Med Imaging. 1982;1(2):95–101. doi: 10.1109/TMI.1982.4307556. [DOI] [PubMed] [Google Scholar]
  39. Smith J. S., Imagawa T., Ma J., Fill M., Campbell K. P., Coronado R. Purified ryanodine receptor from rabbit skeletal muscle is the calcium-release channel of sarcoplasmic reticulum. J Gen Physiol. 1988 Jul;92(1):1–26. doi: 10.1085/jgp.92.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Speicher D. W., Ursitti J. A. Spectrin motif. Conformation of a mammoth protein. Curr Biol. 1994 Feb 1;4(2):154–157. doi: 10.1016/s0960-9822(94)00037-0. [DOI] [PubMed] [Google Scholar]
  41. Stewart M., Vigers G. Electron microscopy of frozen-hydrated biological material. Nature. 1986 Feb 20;319(6055):631–636. doi: 10.1038/319631a0. [DOI] [PubMed] [Google Scholar]
  42. Takeshima H., Nishimura S., Matsumoto T., Ishida H., Kangawa K., Minamino N., Matsuo H., Ueda M., Hanaoka M., Hirose T. Primary structure and expression from complementary DNA of skeletal muscle ryanodine receptor. Nature. 1989 Jun 8;339(6224):439–445. doi: 10.1038/339439a0. [DOI] [PubMed] [Google Scholar]
  43. Timerman A. P., Ogunbumni E., Freund E., Wiederrecht G., Marks A. R., Fleischer S. The calcium release channel of sarcoplasmic reticulum is modulated by FK-506-binding protein. Dissociation and reconstitution of FKBP-12 to the calcium release channel of skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1993 Nov 5;268(31):22992–22999. [PubMed] [Google Scholar]
  44. Unser M., Trus B. L., Steven A. C. A new resolution criterion based on spectral signal-to-noise ratios. Ultramicroscopy. 1987;23(1):39–51. doi: 10.1016/0304-3991(87)90225-7. [DOI] [PubMed] [Google Scholar]
  45. Verschoor A., Frank J., Radermacher M., Wagenknecht T., Boublik M. Three-dimensional reconstruction of the 30 S ribosomal subunit from randomly oriented particles. J Mol Biol. 1984 Sep 25;178(3):677–698. doi: 10.1016/0022-2836(84)90245-6. [DOI] [PubMed] [Google Scholar]
  46. Wagenknecht T., Grassucci R., Frank J., Saito A., Inui M., Fleischer S. Three-dimensional architecture of the calcium channel/foot structure of sarcoplasmic reticulum. Nature. 1989 Mar 9;338(6211):167–170. doi: 10.1038/338167a0. [DOI] [PubMed] [Google Scholar]
  47. Zemlin F. Dynamic focussing for recording images from tilted samples in small-spot scanning with a transmission electron microscope. J Electron Microsc Tech. 1989 Apr;11(4):251–257. doi: 10.1002/jemt.1060110404. [DOI] [PubMed] [Google Scholar]
  48. Zorzato F., Fujii J., Otsu K., Phillips M., Green N. M., Lai F. A., Meissner G., MacLennan D. H. Molecular cloning of cDNA encoding human and rabbit forms of the Ca2+ release channel (ryanodine receptor) of skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1990 Feb 5;265(4):2244–2256. [PubMed] [Google Scholar]
  49. van Heel M., Frank J. Use of multivariate statistics in analysing the images of biological macromolecules. Ultramicroscopy. 1981;6(2):187–194. doi: 10.1016/0304-3991(81)90059-0. [DOI] [PubMed] [Google Scholar]

Articles from The Journal of Cell Biology are provided here courtesy of The Rockefeller University Press

RESOURCES