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. 1996 Apr 2;133(2):235–246. doi: 10.1083/jcb.133.2.235

The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs

PMCID: PMC2120807  PMID: 8609158

Abstract

In cycling cells, the rDNAs are expressed from telophase to the end of G2 phase. The early resumption of rDNA transcription at telophase raises the question of the fate of the rDNA transcription machinery during mitosis. At the beginning of mitosis, rDNA transcription is arrested, and the rDNAs are clustered in specific chromosomal sites, the nucleolar organizer regions (NOR). In human cells, we demonstrate that the rDNA transcription machinery, as defined in vitro, is colocalized in some NORs and absent from others whatever the mitotic phase: RNA polymerase I and the RNA polymerase I transcription factors, upstream binding factor and promoter selectivity factor (as verified for TATA-binding protein and TATA-binding protein-associated factor for RNA polymerase I [110]), were colocalized in the same NORs. The RNA polymerase I complex was localized using two different antibodies recognizing the two largest subunits or only the third largest subunit, respectively. These two antibodies immunoprecipitated the RNA polymerase I complex in interphase cells as well as in mitotic cells. These results clearly indicated that the RNA polymerase I complex remained assembled during mitosis. In addition, RNA polymerase I and the transcription factors varied in the same proportions in the positive NORs, suggesting stoichiometric association of these components. The fact that the rDNA transcription machinery is not equally distributed among NORs most likely reflects the implication of the different NORs during the subsequent interphase. Indeed, we demonstrate that only positive NORs exhibit transcription activity at telophase and that the level of transcription activity is related to the amount of rDNA transcription machinery present in the NOR. We propose that assembly of rDNA transcription machinery preceding mitosis determines expression of the rDNAs at the beginning of the next cell cycle. Consequently, the association of rDNAs with the rDNA transcription machinery defines the "active" NORs and the level of activity at the transition telophase/interphase.

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Selected References

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  1. Babu K. A., Verma R. S. Structural and functional aspects of nucleolar organizer regions (NORs) of human chromosomes. Int Rev Cytol. 1985;94:151–176. doi: 10.1016/s0074-7696(08)60396-4. [DOI] [PubMed] [Google Scholar]
  2. Bell S. P., Learned R. M., Jantzen H. M., Tjian R. Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis. Science. 1988 Sep 2;241(4870):1192–1197. doi: 10.1126/science.3413483. [DOI] [PubMed] [Google Scholar]
  3. Bell S. P., Pikaard C. S., Reeder R. H., Tjian R. Molecular mechanisms governing species-specific transcription of ribosomal RNA. Cell. 1989 Nov 3;59(3):489–497. doi: 10.1016/0092-8674(89)90032-9. [DOI] [PubMed] [Google Scholar]
  4. Benavente R., Rose K. M., Reimer G., Hügle-Dörr B., Scheer U. Inhibition of nucleolar reformation after microinjection of antibodies to RNA polymerase I into mitotic cells. J Cell Biol. 1987 Oct;105(4):1483–1491. doi: 10.1083/jcb.105.4.1483. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Benavente R., Schmidt-Zachmann M. S., Hügle-Dörr B., Reimer G., Rose K. M., Scheer U. Identification and definition of nucleolus-related fibrillar bodies in micronucleated cells. Exp Cell Res. 1988 Oct;178(2):518–523. doi: 10.1016/0014-4827(88)90420-x. [DOI] [PubMed] [Google Scholar]
  6. Chan E. K., Imai H., Hamel J. C., Tan E. M. Human autoantibody to RNA polymerase I transcription factor hUBF. Molecular identity of nucleolus organizer region autoantigen NOR-90 and ribosomal RNA transcription upstream binding factor. J Exp Med. 1991 Nov 1;174(5):1239–1244. doi: 10.1084/jem.174.5.1239. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Comai L., Tanese N., Tjian R. The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1. Cell. 1992 Mar 6;68(5):965–976. doi: 10.1016/0092-8674(92)90039-f. [DOI] [PubMed] [Google Scholar]
  8. Comai L., Zomerdijk J. C., Beckmann H., Zhou S., Admon A., Tjian R. Reconstitution of transcription factor SL1: exclusive binding of TBP by SL1 or TFIID subunits. Science. 1994 Dec 23;266(5193):1966–1972. doi: 10.1126/science.7801123. [DOI] [PubMed] [Google Scholar]
  9. Eberhard D., Tora L., Egly J. M., Grummt I. A TBP-containing multiprotein complex (TIF-IB) mediates transcription specificity of murine RNA polymerase I. Nucleic Acids Res. 1993 Sep 11;21(18):4180–4186. doi: 10.1093/nar/21.18.4180. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Gilbert N., Lucas L., Klein C., Menager M., Bonnet N., Ploton D. Three-dimensional co-location of RNA polymerase I and DNA during interphase and mitosis by confocal microscopy. J Cell Sci. 1995 Jan;108(Pt 1):115–125. doi: 10.1242/jcs.108.1.115. [DOI] [PubMed] [Google Scholar]
  11. Goodpasture C., Bloom S. E. Visualization of nucleolar organizer regions im mammalian chromosomes using silver staining. Chromosoma. 1975 Nov 20;53(1):37–50. doi: 10.1007/BF00329389. [DOI] [PubMed] [Google Scholar]
  12. Guldner H. H., Szostecki C., Vosberg H. P., Lakomek H. J., Penner E., Bautz F. A. Scl 70 autoantibodies from scleroderma patients recognize a 95 kDa protein identified as DNA topoisomerase I. Chromosoma. 1986;94(2):132–138. doi: 10.1007/BF00286991. [DOI] [PubMed] [Google Scholar]
  13. Géraud G., Laquerrière F., Masson C., Arnoult J., Labidi B., Hernandez-Verdun D. Three-dimensional organization of micronuclei induced by colchicine in PtK1 cells. Exp Cell Res. 1989 Mar;181(1):27–39. doi: 10.1016/0014-4827(89)90179-1. [DOI] [PubMed] [Google Scholar]
  14. Haaf T., Hayman D. L., Schmid M. Quantitative determination of rDNA transcription units in vertebrate cells. Exp Cell Res. 1991 Mar;193(1):78–86. doi: 10.1016/0014-4827(91)90540-b. [DOI] [PubMed] [Google Scholar]
  15. Haaf T., Reimer G., Schmid M. Immunocytogenetics: localization of transcriptionally active rRNA genes in nucleoli and nucleolus organizer regions by use of human autoantibodies to RNA polymerase I. Cytogenet Cell Genet. 1988;48(1):35–42. doi: 10.1159/000132582. [DOI] [PubMed] [Google Scholar]
  16. Henderson A. S., Warburton D., Atwood K. C. Location of ribosomal DNA in the human chromosome complement. Proc Natl Acad Sci U S A. 1972 Nov;69(11):3394–3398. doi: 10.1073/pnas.69.11.3394. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Hernandez N. TBP, a universal eukaryotic transcription factor? Genes Dev. 1993 Jul;7(7B):1291–1308. doi: 10.1101/gad.7.7b.1291. [DOI] [PubMed] [Google Scholar]
  18. Howell W. M., Black D. A. Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1-step method. Experientia. 1980 Aug 15;36(8):1014–1015. doi: 10.1007/BF01953855. [DOI] [PubMed] [Google Scholar]
  19. Imai H., Fritzler M. J., Neri R., Bombardieri S., Tan E. M., Chan E. K. Immunocytochemical characterization of human NOR-90 (upstream binding factor) and associated antigens reactive with autoimmune sera. Two MR forms of NOR-90/hUBF autoantigens. Mol Biol Rep. 1994 Mar;19(2):115–124. doi: 10.1007/BF00997157. [DOI] [PubMed] [Google Scholar]
  20. Jantzen H. M., Admon A., Bell S. P., Tjian R. Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins. Nature. 1990 Apr 26;344(6269):830–836. doi: 10.1038/344830a0. [DOI] [PubMed] [Google Scholar]
  21. Jiménez-García L. F., Rothblum L. I., Busch H., Ochs R. L. Nucleologenesis: use of non-isotopic in situ hybridization and immunocytochemistry to compare the localization of rDNA and nucleolar proteins during mitosis. Biol Cell. 1989;65(3):239–246. doi: 10.1111/j.1768-322x.1989.tb00795.x. [DOI] [PubMed] [Google Scholar]
  22. Krystal M., D'Eustachio P., Ruddle F. H., Arnheim N. Human nucleolus organizers on nonhomologous chromosomes can share the same ribosomal gene variants. Proc Natl Acad Sci U S A. 1981 Sep;78(9):5744–5748. doi: 10.1073/pnas.78.9.5744. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  24. Matsui S. I., Weinfeld H., Sandberg A. A. Quantitative conservation of chromatin-bound RNA polymerases I and II in mitosis. Implications for chromosome structure. J Cell Biol. 1979 Feb;80(2):451–464. doi: 10.1083/jcb.80.2.451. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Miller D. A., Dev V. G., Tantravahi R., Miller O. J. Suppression of human nucleolus organizer activity in mouse-human somatic hybrid cells. Exp Cell Res. 1976 Sep;101(2):235–243. doi: 10.1016/0014-4827(76)90373-6. [DOI] [PubMed] [Google Scholar]
  26. Miller O. J., Miller D. A., Dev V. G., Tantravahi R., Croce C. M. Expression of human and suppression of mouse nucleolus organizer activity in mouse-human somatic cell hybrids. Proc Natl Acad Sci U S A. 1976 Dec;73(12):4531–4535. doi: 10.1073/pnas.73.12.4531. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Moore G. P., Ringertz N. R. Localization of DNA-dependent RNA polymerase activities in fixed human fibroblasts by autoradiography. Exp Cell Res. 1973 Jan;76(1):223–228. doi: 10.1016/0014-4827(73)90439-4. [DOI] [PubMed] [Google Scholar]
  28. Prescott D. M. Cellular sites of RNA synthesis. Prog Nucleic Acid Res Mol Biol. 1964;3:33–57. doi: 10.1016/s0079-6603(08)60738-2. [DOI] [PubMed] [Google Scholar]
  29. Rendón M. C., Rodrigo R. M., Goenechea L. G., García-Herdugo G., Valdivia M. M., Moreno F. J. Characterization and immunolocalization of a nucleolar antigen with anti-NOR serum in HeLa cells. Exp Cell Res. 1992 Jun;200(2):393–403. doi: 10.1016/0014-4827(92)90187-d. [DOI] [PubMed] [Google Scholar]
  30. Roussel P., André C., Masson C., Géraud G., Hernandez-Verdun D. Localization of the RNA polymerase I transcription factor hUBF during the cell cycle. J Cell Sci. 1993 Feb;104(Pt 2):327–337. doi: 10.1242/jcs.104.2.327. [DOI] [PubMed] [Google Scholar]
  31. Roussel P., Belenguer P., Amalric F., Hernandez-Verdun D. Nucleolin is an Ag-NOR protein; this property is determined by its amino-terminal domain independently of its phosphorylation state. Exp Cell Res. 1992 Nov;203(1):259–269. doi: 10.1016/0014-4827(92)90063-e. [DOI] [PubMed] [Google Scholar]
  32. Roussel P., Hernandez-Verdun D. Identification of Ag-NOR proteins, markers of proliferation related to ribosomal gene activity. Exp Cell Res. 1994 Oct;214(2):465–472. doi: 10.1006/excr.1994.1283. [DOI] [PubMed] [Google Scholar]
  33. Rudloff U., Eberhard D., Tora L., Stunnenberg H., Grummt I. TBP-associated factors interact with DNA and govern species specificity of RNA polymerase I transcription. EMBO J. 1994 Jun 1;13(11):2611–2616. doi: 10.1002/j.1460-2075.1994.tb06551.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Scheer U., Rose K. M. Localization of RNA polymerase I in interphase cells and mitotic chromosomes by light and electron microscopic immunocytochemistry. Proc Natl Acad Sci U S A. 1984 Mar;81(5):1431–1435. doi: 10.1073/pnas.81.5.1431. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Schnapp A., Pfleiderer C., Rosenbauer H., Grummt I. A growth-dependent transcription initiation factor (TIF-IA) interacting with RNA polymerase I regulates mouse ribosomal RNA synthesis. EMBO J. 1990 Sep;9(9):2857–2863. doi: 10.1002/j.1460-2075.1990.tb07475.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Schnapp A., Schnapp G., Erny B., Grummt I. Function of the growth-regulated transcription initiation factor TIF-IA in initiation complex formation at the murine ribosomal gene promoter. Mol Cell Biol. 1993 Nov;13(11):6723–6732. doi: 10.1128/mcb.13.11.6723. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Schnapp G., Santori F., Carles C., Riva M., Grummt I. The HMG box-containing nucleolar transcription factor UBF interacts with a specific subunit of RNA polymerase I. EMBO J. 1994 Jan 1;13(1):190–199. doi: 10.1002/j.1460-2075.1994.tb06248.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Schnapp G., Schnapp A., Rosenbauer H., Grummt I. TIF-IC, a factor involved in both transcription initiation and elongation of RNA polymerase I. EMBO J. 1994 Sep 1;13(17):4028–4035. doi: 10.1002/j.1460-2075.1994.tb06719.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Sentenac A. Eukaryotic RNA polymerases. CRC Crit Rev Biochem. 1985;18(1):31–90. doi: 10.3109/10409238509082539. [DOI] [PubMed] [Google Scholar]
  40. Song C. Z., Hanada K., Yano K., Maeda Y., Yamamoto K., Muramatsu M. High conservation of subunit composition of RNA polymerase I(A) between yeast and mouse and the molecular cloning of mouse RNA polymerase I 40-kDa subunit RPA40. J Biol Chem. 1994 Oct 28;269(43):26976–26981. [PubMed] [Google Scholar]
  41. Tantravahi R., Miller D. A., Dev V. G., Miller O. J. Detection of nucleolus organizer regions in chromosomes of human, chimpanzee, gorilla, orangutan and gibbon. Chromosoma. 1976 Jun 30;56(1):15–27. doi: 10.1007/BF00293725. [DOI] [PubMed] [Google Scholar]
  42. Tantravahi U., Guntaka R. V., Erlanger B. F., Miller O. J. Amplified ribosomal RNA genes in a rat hepatoma cell line are enriched in 5-methylcytosine. Proc Natl Acad Sci U S A. 1981 Jan;78(1):489–493. doi: 10.1073/pnas.78.1.489. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Wansink D. G., Schul W., van der Kraan I., van Steensel B., van Driel R., de Jong L. Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus. J Cell Biol. 1993 Jul;122(2):283–293. doi: 10.1083/jcb.122.2.283. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Warner J. R. The nucleolus and ribosome formation. Curr Opin Cell Biol. 1990 Jun;2(3):521–527. doi: 10.1016/0955-0674(90)90137-4. [DOI] [PubMed] [Google Scholar]
  45. Weisenberger D., Scheer U. A possible mechanism for the inhibition of ribosomal RNA gene transcription during mitosis. J Cell Biol. 1995 May;129(3):561–575. doi: 10.1083/jcb.129.3.561. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Young B. D., Ferguson-Smith M. A., Sillar R., Boyd E. High-resolution analysis of human peripheral lymphocyte chromosomes by flow cytometry. Proc Natl Acad Sci U S A. 1981 Dec;78(12):7727–7731. doi: 10.1073/pnas.78.12.7727. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Zatsepina O. V., Voit R., Grummt I., Spring H., Semenov M. V., Trendelenburg M. F. The RNA polymerase I-specific transcription initiation factor UBF is associated with transcriptionally active and inactive ribosomal genes. Chromosoma. 1993 Nov;102(9):599–611. doi: 10.1007/BF00352307. [DOI] [PubMed] [Google Scholar]
  48. Zomerdijk J. C., Beckmann H., Comai L., Tjian R. Assembly of transcriptionally active RNA polymerase I initiation factor SL1 from recombinant subunits. Science. 1994 Dec 23;266(5193):2015–2018. doi: 10.1126/science.7801130. [DOI] [PubMed] [Google Scholar]
  49. de Capoa A., Aleixandre C., Felli M. P., Ravenna L., Costantino M. A., Giancotti P., Vicenti O., Poggesi I., Grappelli C., Miller D. A. Inheritance of ribosomal gene activity and level of DNA methylation of individual gene clusters in a three generation family. Hum Genet. 1991 Dec;88(2):146–152. doi: 10.1007/BF00206062. [DOI] [PubMed] [Google Scholar]
  50. de Capoa A., Marlekaj P., Baldini A., Rocchi M., Archidiacono N. Cytologic demonstration of differential activity of rRNA gene clusters in different human tissues. Hum Genet. 1985;69(3):212–217. doi: 10.1007/BF00293027. [DOI] [PubMed] [Google Scholar]

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