Abstract
Nearly all of the known activities required for mitochondrial DNA (mtDNA) replication and expression are nuclear-encoded gene products, necessitating communication between these two physically distinct intracellular compartments. A significant amount of both general and specific biochemical information about mtDNA replication in mammalian cells has been known for almost two decades. Early studies achieved selective incorporation of the thymidine analog 5-Bromo-2-deoxy-Uridine (BrdU) into mtDNA of thymidine kinase-deficient (TK[-]) cells. We have revisited this approach from a cellular perspective to determine whether there exist spatiotemporal constraints on mtDNA replication. Laser-scanning confocal microscopy was used to selectively detect mtDNA synthesis in situ in cultured mammalian cells using an immunocytochemical double-labeling approach to visualize the incorporation of BrdU into mtDNA of dye-labeled mitochondria. In situ detection of BrdU-incorporated mtDNA was feasible after a minimum of 1- 2 h treatment with BrdU, consistent with previous biochemical studies that determined the time required for completion of a round of mtDNA replication. Interestingly, the pattern of BrdU incorporation into the mtDNA of cultured mammalian cells consistently radiated outward from a perinuclear position, suggesting that mtDNA replication first occurs in the vicinity of nuclear-provided materials. Newly replicated mtDNA then appears to rapidly distribute throughout the dynamic cellular mitochondrial network.
Full Text
The Full Text of this article is available as a PDF (7.1 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Berk A. J., Clayton D. A. A genetically distinct thymidine kinase in mammalian mitochondria. Exclusive labeling of mitochondrial deoxyribonucleic acid. J Biol Chem. 1973 Apr 25;248(8):2722–2729. [PubMed] [Google Scholar]
- Bogenhagen D., Clayton D. A. Mouse L cell mitochondrial DNA molecules are selected randomly for replication throughout the cell cycle. Cell. 1977 Aug;11(4):719–727. doi: 10.1016/0092-8674(77)90286-0. [DOI] [PubMed] [Google Scholar]
- Brat D. J., Brimijoin S. Acrylamide and glycidamide impair neurite outgrowth in differentiating N1E.115 neuroblastoma without disturbing rapid bidirectional transport of organelles observed by video microscopy. J Neurochem. 1993 Jun;60(6):2145–2152. doi: 10.1111/j.1471-4159.1993.tb03499.x. [DOI] [PubMed] [Google Scholar]
- Carozza M. A., Conrad S. E. Regulation of thymidine kinase protein stability in serum-stimulated cells. Cell Growth Differ. 1994 Aug;5(8):901–908. [PubMed] [Google Scholar]
- Chen C. H., Vazquez-Padua M., Cheng Y. C. Effect of anti-human immunodeficiency virus nucleoside analogs on mitochondrial DNA and its implication for delayed toxicity. Mol Pharmacol. 1991 May;39(5):625–628. [PubMed] [Google Scholar]
- Clayton D. A., Doda J. N., Friedberg E. C. The absence of a pyrimidine dimer repair mechanism in mammalian mitochondria. Proc Natl Acad Sci U S A. 1974 Jul;71(7):2777–2781. doi: 10.1073/pnas.71.7.2777. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clayton D. A. Replication and transcription of vertebrate mitochondrial DNA. Annu Rev Cell Biol. 1991;7:453–478. doi: 10.1146/annurev.cb.07.110191.002321. [DOI] [PubMed] [Google Scholar]
- Clayton D. A., Teplitz R. L. Intracellular mosaicism (nuclear - -mitochondrial + ) for thymidine kinase in mouse L cells. J Cell Sci. 1972 Mar;10(2):487–493. doi: 10.1242/jcs.10.2.487. [DOI] [PubMed] [Google Scholar]
- Copeland W. C., Chen M. S., Wang T. S. Human DNA polymerases alpha and beta are able to incorporate anti-HIV deoxynucleotides into DNA. J Biol Chem. 1992 Oct 25;267(30):21459–21464. [PubMed] [Google Scholar]
- Davis A. F., Ropp P. A., Clayton D. A., Copeland W. C. Mitochondrial DNA polymerase gamma is expressed and translated in the absence of mitochondrial DNA maintenance and replication. Nucleic Acids Res. 1996 Jul 15;24(14):2753–2759. doi: 10.1093/nar/24.14.2753. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Driggers W. J., LeDoux S. P., Wilson G. L. Repair of oxidative damage within the mitochondrial DNA of RINr 38 cells. J Biol Chem. 1993 Oct 15;268(29):22042–22045. [PubMed] [Google Scholar]
- Eriksson S., Xu B., Clayton D. A. Efficient incorporation of anti-HIV deoxynucleotides by recombinant yeast mitochondrial DNA polymerase. J Biol Chem. 1995 Aug 11;270(32):18929–18934. doi: 10.1074/jbc.270.32.18929. [DOI] [PubMed] [Google Scholar]
- Flory P. J., Jr, Vinograd J. 5-bromodeoxyuridine labeling of monomeric and catenated circular mitochondrial DNA in HeLa cells. J Mol Biol. 1973 Feb 25;74(2):81–94. doi: 10.1016/0022-2836(73)90100-9. [DOI] [PubMed] [Google Scholar]
- Follett E. A. A convenient method for enucleating cells in quantity. Exp Cell Res. 1974 Mar 15;84(1):72–78. doi: 10.1016/0014-4827(74)90381-4. [DOI] [PubMed] [Google Scholar]
- Gratzner H. G. Monoclonal antibody to 5-bromo- and 5-iododeoxyuridine: A new reagent for detection of DNA replication. Science. 1982 Oct 29;218(4571):474–475. doi: 10.1126/science.7123245. [DOI] [PubMed] [Google Scholar]
- Greene L. A., Tischler A. S. Establishment of a noradrenergic clonal line of rat adrenal pheochromocytoma cells which respond to nerve growth factor. Proc Natl Acad Sci U S A. 1976 Jul;73(7):2424–2428. doi: 10.1073/pnas.73.7.2424. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Harris C. H., Gulati A. K., Friedman M. A., Sickles D. W. Toxic neurofilamentous axonopathies and fast axonal transport. V. Reduced bidirectional vesicle transport in cultured neurons by acrylamide and glycidamide. J Toxicol Environ Health. 1994 Jul;42(3):343–356. doi: 10.1080/15287399409531884. [DOI] [PubMed] [Google Scholar]
- Hayashi J., Takemitsu M., Goto Y., Nonaka I. Human mitochondria and mitochondrial genome function as a single dynamic cellular unit. J Cell Biol. 1994 Apr;125(1):43–50. doi: 10.1083/jcb.125.1.43. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hevner R. F., Wong-Riley M. T. Neuronal expression of nuclear and mitochondrial genes for cytochrome oxidase (CO) subunits analyzed by in situ hybridization: comparison with CO activity and protein. J Neurosci. 1991 Jul;11(7):1942–1958. doi: 10.1523/JNEUROSCI.11-07-01942.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- KIT S., DUBBS D. R., PIEKARSKI L. J., HSU T. C. DELETION OF THYMIDINE KINASE ACTIVITY FROM L CELLS RESISTANT TO BROMODEOXYURIDINE. Exp Cell Res. 1963 Aug;31:297–312. doi: 10.1016/0014-4827(63)90007-7. [DOI] [PubMed] [Google Scholar]
- KRISS J. P., REVESZ L. Quantitative studies of incorporation of exogenous thymidine and 5-bromodeoxyuridine into deoxyribonucleic acid of mammalian cells in vitro. Cancer Res. 1961 Oct;21:1141–1147. [PubMed] [Google Scholar]
- Keilbaugh S. A., Hobbs G. A., Simpson M. V. Anti-human immunodeficiency virus type 1 therapy and peripheral neuropathy: prevention of 2',3'-dideoxycytidine toxicity in PC12 cells, a neuronal model, by uridine and pyruvate. Mol Pharmacol. 1993 Oct;44(4):702–706. [PubMed] [Google Scholar]
- Larsson N. G., Oldfors A., Holme E., Clayton D. A. Low levels of mitochondrial transcription factor A in mitochondrial DNA depletion. Biochem Biophys Res Commun. 1994 May 16;200(3):1374–1381. doi: 10.1006/bbrc.1994.1603. [DOI] [PubMed] [Google Scholar]
- LeDoux S. P., Wilson G. L., Beecham E. J., Stevnsner T., Wassermann K., Bohr V. A. Repair of mitochondrial DNA after various types of DNA damage in Chinese hamster ovary cells. Carcinogenesis. 1992 Nov;13(11):1967–1973. doi: 10.1093/carcin/13.11.1967. [DOI] [PubMed] [Google Scholar]
- Liu S., Wong-Riley M. Nuclear-encoded mitochondrial precursor protein: intramitochondrial delivery to dendrites and axon terminals of neurons and regulation by neuronal activity. J Neurosci. 1994 Sep;14(9):5338–5351. doi: 10.1523/JNEUROSCI.14-09-05338.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mignotte F., Tourte M., Mounolou J. C. Segregation of mitochondria in the cytoplasm of Xenopus vitellogenic oocytes. Biol Cell. 1987;60(2):97–102. doi: 10.1111/j.1768-322x.1987.tb00549.x. [DOI] [PubMed] [Google Scholar]
- Morris R. L., Hollenbeck P. J. Axonal transport of mitochondria along microtubules and F-actin in living vertebrate neurons. J Cell Biol. 1995 Dec;131(5):1315–1326. doi: 10.1083/jcb.131.5.1315. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nakayasu H., Berezney R. Mapping replicational sites in the eucaryotic cell nucleus. J Cell Biol. 1989 Jan;108(1):1–11. doi: 10.1083/jcb.108.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pettepher C. C., LeDoux S. P., Bohr V. A., Wilson G. L. Repair of alkali-labile sites within the mitochondrial DNA of RINr 38 cells after exposure to the nitrosourea streptozotocin. J Biol Chem. 1991 Feb 15;266(5):3113–3117. [PubMed] [Google Scholar]
- Poulton J., Morten K., Freeman-Emmerson C., Potter C., Sewry C., Dubowitz V., Kidd H., Stephenson J., Whitehouse W., Hansen F. J. Deficiency of the human mitochondrial transcription factor h-mtTFA in infantile mitochondrial myopathy is associated with mtDNA depletion. Hum Mol Genet. 1994 Oct;3(10):1763–1769. doi: 10.1093/hmg/3.10.1763. [DOI] [PubMed] [Google Scholar]
- Prescott D. M., Myerson D., Wallace J. Enucleation of mammalian cells with cytochalasin B. Exp Cell Res. 1972;71(2):480–485. doi: 10.1016/0014-4827(72)90322-9. [DOI] [PubMed] [Google Scholar]
- Russell W. C., Newman C., Williamson D. H. A simple cytochemical technique for demonstration of DNA in cells infected with mycoplasmas and viruses. Nature. 1975 Feb 6;253(5491):461–462. doi: 10.1038/253461a0. [DOI] [PubMed] [Google Scholar]
- Shen C. C., Wertelecki W., Driggers W. J., LeDoux S. P., Wilson G. L. Repair of mitochondrial DNA damage induced by bleomycin in human cells. Mutat Res. 1995 Jul;337(1):19–23. doi: 10.1016/0921-8777(95)00008-8. [DOI] [PubMed] [Google Scholar]
- Shuster R. C., Rubenstein A. J., Wallace D. C. Mitochondrial DNA in anucleate human blood cells. Biochem Biophys Res Commun. 1988 Sep 30;155(3):1360–1365. doi: 10.1016/s0006-291x(88)81291-9. [DOI] [PubMed] [Google Scholar]
- Sickles D. W. Toxic neurofilamentous axonopathies and fast anterograde axonal transport. III. Recovery from single injections and multiple dosing effects of acrylamide and 2,5-hexanedione. Toxicol Appl Pharmacol. 1991 May;108(3):390–396. doi: 10.1016/0041-008x(91)90085-s. [DOI] [PubMed] [Google Scholar]
- Simpson M. V., Chin C. D., Keilbaugh S. A., Lin T. S., Prusoff W. H. Studies on the inhibition of mitochondrial DNA replication by 3'-azido-3'-deoxythymidine and other dideoxynucleoside analogs which inhibit HIV-1 replication. Biochem Pharmacol. 1989 Apr 1;38(7):1033–1036. doi: 10.1016/0006-2952(89)90245-1. [DOI] [PubMed] [Google Scholar]
- Sjöstrand J., Frizell M., Hasselgren P. O. Effects of colchicine on axonal transport in peripheral nerves. J Neurochem. 1970 Nov;17(11):1563–1570. doi: 10.1111/j.1471-4159.1970.tb03726.x. [DOI] [PubMed] [Google Scholar]
- Thiry M. Ultrastructural detection of DNA within the nucleolus by sensitive molecular immunocytochemistry. Exp Cell Res. 1992 May;200(1):135–144. doi: 10.1016/s0014-4827(05)80081-3. [DOI] [PubMed] [Google Scholar]
- Tourte M., Mignotte F., Mounolou J. C. Heterogeneous distribution and replication activity of mitochondria in Xenopus laevis oocytes. Eur J Cell Biol. 1984 May;34(1):171–178. [PubMed] [Google Scholar]
- Whitaker J. E., Moore P. L., Haugland R. P., Haugland R. P. Dihydrotetramethylrosamine: a long wavelength, fluorogenic peroxidase substrate evaluated in vitro and in a model phagocyte. Biochem Biophys Res Commun. 1991 Mar 15;175(2):387–393. doi: 10.1016/0006-291x(91)91576-x. [DOI] [PubMed] [Google Scholar]