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. 1990 Jul;172(7):3790–3798. doi: 10.1128/jb.172.7.3790-3798.1990

Cloning of spiramycin biosynthetic genes and their use in constructing Streptomyces ambofaciens mutants defective in spiramycin biosynthesis.

M A Richardson 1, S Kuhstoss 1, M L Huber 1, L Ford 1, O Godfrey 1, J R Turner 1, R N Rao 1
PMCID: PMC213357  PMID: 2193916

Abstract

Several cosmid clones from Streptomyces ambofaciens containing the spiramycin resistance gene srmB were introduced into S. fradiae PM73, a mutant defective in tylosin synthesis, resulting in tylosin synthesis. The DNA responsible for this complementation was localized to a 10.5-kilobase EcoRI fragment. A 32-kilobase DNA segment which included the srmB spiramycin resistance gene and DNA which complemented the defect in strain PM73 were mutagenized in vivo with Tn10 carrying the gene for Nmr (which is expressed in Streptomyces spp.) or in vitro by insertional mutagenesis with a drug resistance gene (Nmr) cassette. When these mutagenized DNA segments were crossed into the S. ambofaciens chromosome, three mutant classes blocked in spiramycin synthesis were obtained. One mutant accumulated two precursors of spiramycin, platenolide I and platenolide II. Two mutants, when cofermented with the platenolide-accumulating mutant, produced spiramycin. Tylactone supplementation of these two mutants resulted in the synthesis of a group of compounds exhibiting antibiotic activity. Two other mutants failed to coferment with any of the other mutants or to respond to tylactone supplementation.

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Selected References

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  1. Anzai H., Kumada Y., Hara O., Murakami T., Itoh R., Takano E., Imai S., Satoh A., Nagaoka K. Replacement of Streptomyces hygroscopicus genomic segments with in vitro altered DNA sequences. J Antibiot (Tokyo) 1988 Feb;41(2):226–233. doi: 10.7164/antibiotics.41.226. [DOI] [PubMed] [Google Scholar]
  2. Baltz R. H., Seno E. T. Genetics of Streptomyces fradiae and tylosin biosynthesis. Annu Rev Microbiol. 1988;42:547–574. doi: 10.1146/annurev.mi.42.100188.002555. [DOI] [PubMed] [Google Scholar]
  3. Baltz R. H., Seno E. T. Properties of Streptomyces fradiae mutants blocked in biosynthesis of the macrolide antibiotic tylosin. Antimicrob Agents Chemother. 1981 Aug;20(2):214–225. doi: 10.1128/aac.20.2.214. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Baltz R. H., Seno E. T., Stonesifer J., Wild G. M. Biosynthesis of the macrolide antibiotic tylosin. A preferred pathway from tylactone to tylosin. J Antibiot (Tokyo) 1983 Feb;36(2):131–141. doi: 10.7164/antibiotics.36.131. [DOI] [PubMed] [Google Scholar]
  5. Barany F. Single-stranded hexameric linkers: a system for in-phase insertion mutagenesis and protein engineering. Gene. 1985;37(1-3):111–123. doi: 10.1016/0378-1119(85)90263-x. [DOI] [PubMed] [Google Scholar]
  6. Bibb M. J., Biró S., Motamedi H., Collins J. F., Hutchinson C. R. Analysis of the nucleotide sequence of the Streptomyces glaucescens tcmI genes provides key information about the enzymology of polyketide antibiotic biosynthesis. EMBO J. 1989 Sep;8(9):2727–2736. doi: 10.1002/j.1460-2075.1989.tb08414.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Binnie C., Warren M., Butler M. J. Cloning and heterologous expression in Streptomyces lividans of Streptomyces rimosus genes involved in oxytetracycline biosynthesis. J Bacteriol. 1989 Feb;171(2):887–895. doi: 10.1128/jb.171.2.887-895.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Cundliffe E. How antibiotic-producing organisms avoid suicide. Annu Rev Microbiol. 1989;43:207–233. doi: 10.1146/annurev.mi.43.100189.001231. [DOI] [PubMed] [Google Scholar]
  9. Feinberg A. P., Vogelstein B. "A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity". Addendum. Anal Biochem. 1984 Feb;137(1):266–267. doi: 10.1016/0003-2697(84)90381-6. [DOI] [PubMed] [Google Scholar]
  10. Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
  11. Fishman S. E., Cox K., Larson J. L., Reynolds P. A., Seno E. T., Yeh W. K., Van Frank R., Hershberger C. L. Cloning genes for the biosynthesis of a macrolide antibiotic. Proc Natl Acad Sci U S A. 1987 Dec;84(23):8248–8252. doi: 10.1073/pnas.84.23.8248. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol. 1983 Jun 5;166(4):557–580. doi: 10.1016/s0022-2836(83)80284-8. [DOI] [PubMed] [Google Scholar]
  13. Hara O., Anzai H., Imai S., Kumada Y., Murakami T., Itoh R., Takano E., Satoh A., Nagaoka K. The bialaphos biosynthetic genes of Streptomyces hygroscopicus: cloning and analysis of the genes involved in the alanylation step. J Antibiot (Tokyo) 1988 Apr;41(4):538–547. doi: 10.7164/antibiotics.41.538. [DOI] [PubMed] [Google Scholar]
  14. Hopwood D. A., Kieser T., Wright H. M., Bibb M. J. Plasmids, recombination and chromosome mapping in Streptomyces lividans 66. J Gen Microbiol. 1983 Jul;129(7):2257–2269. doi: 10.1099/00221287-129-7-2257. [DOI] [PubMed] [Google Scholar]
  15. Hopwood D. A., Malpartida F., Kieser H. M., Ikeda H., Duncan J., Fujii I., Rudd B. A., Floss H. G., Omura S. Production of 'hybrid' antibiotics by genetic engineering. Nature. 1985 Apr 18;314(6012):642–644. doi: 10.1038/314642a0. [DOI] [PubMed] [Google Scholar]
  16. Hutchinson C. R., Borell C. W., Otten S. L., Stutzman-Engwall K. J., Wang Y. G. Drug discovery and development through the genetic engineering of antibiotic-producing microorganisms. J Med Chem. 1989 May;32(5):929–937. doi: 10.1021/jm00125a001. [DOI] [PubMed] [Google Scholar]
  17. Ikeda H., Tanaka H., Omura S. Genetic and biochemical features of spiramycin biosynthesis in Streptomyces ambofaciens--curing, protoplast regeneration and plasmid transfer. J Antibiot (Tokyo) 1982 Apr;35(4):507–516. doi: 10.7164/antibiotics.35.507. [DOI] [PubMed] [Google Scholar]
  18. Ingram C., Brawner M., Youngman P., Westpheling J. xylE functions as an efficient reporter gene in Streptomyces spp.: use for the study of galP1, a catabolite-controlled promoter. J Bacteriol. 1989 Dec;171(12):6617–6624. doi: 10.1128/jb.171.12.6617-6624.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Kendall K., Cullum J. A vector for studying plasmid stability functions in Streptomyces. Genet Res. 1988 Feb;51(1):71–74. doi: 10.1017/s0016672300023971. [DOI] [PubMed] [Google Scholar]
  20. Kieser T. Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli. Plasmid. 1984 Jul;12(1):19–36. doi: 10.1016/0147-619x(84)90063-5. [DOI] [PubMed] [Google Scholar]
  21. Kuhstoss S., Richardson M. A., Rao R. N. Site-specific integration in Streptomyces ambofaciens: localization of integration functions in S. ambofaciens plasmid pSAM2. J Bacteriol. 1989 Jan;171(1):16–23. doi: 10.1128/jb.171.1.16-23.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Larson J. L., Hershberger C. L. The minimal replicon of a streptomycete plasmid produces an ultrahigh level of plasmid DNA. Plasmid. 1986 May;15(3):199–209. doi: 10.1016/0147-619x(86)90038-7. [DOI] [PubMed] [Google Scholar]
  23. Malpartida F., Hallam S. E., Kieser H. M., Motamedi H., Hutchinson C. R., Butler M. J., Sugden D. A., Warren M., McKillop C., Bailey C. R. Homology between Streptomyces genes coding for synthesis of different polyketides used to clone antibiotic biosynthetic genes. 1987 Feb 26-Mar 4Nature. 325(6107):818–821. doi: 10.1038/325818a0. [DOI] [PubMed] [Google Scholar]
  24. Malpartida F., Hopwood D. A. Molecular cloning of the whole biosynthetic pathway of a Streptomyces antibiotic and its expression in a heterologous host. 1984 May 31-Jun 6Nature. 309(5967):462–464. doi: 10.1038/309462a0. [DOI] [PubMed] [Google Scholar]
  25. Martín M. F., Liras P. Organization and expression of genes involved in the biosynthesis of antibiotics and other secondary metabolites. Annu Rev Microbiol. 1989;43:173–206. doi: 10.1146/annurev.mi.43.100189.001133. [DOI] [PubMed] [Google Scholar]
  26. Matsushima P., Cox K. L., Baltz R. H. Highly transformable mutants of Streptomyces fradiae defective in several restriction systems. Mol Gen Genet. 1987 Mar;206(3):393–400. doi: 10.1007/BF00428877. [DOI] [PubMed] [Google Scholar]
  27. Motamedi H., Hutchinson C. R. Cloning and heterologous expression of a gene cluster for the biosynthesis of tetracenomycin C, the anthracycline antitumor antibiotic of Streptomyces glaucescens. Proc Natl Acad Sci U S A. 1987 Jul;84(13):4445–4449. doi: 10.1073/pnas.84.13.4445. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Omura S., Ikeda H., Malpartida F., Kieser H. M., Hopwood D. A. Production of new hybrid antibiotics, mederrhodins A and B, by a genetically engineered strain. Antimicrob Agents Chemother. 1986 Jan;29(1):13–19. doi: 10.1128/aac.29.1.13. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Omura S., Sadakane N., Tanaka Y., Matsubara H. Chimeramycins: new macrolide antibiotics produced by hybrid biosynthesis. J Antibiot (Tokyo) 1983 Jul;36(7):927–930. doi: 10.7164/antibiotics.36.927. [DOI] [PubMed] [Google Scholar]
  30. PINNERT-SINDICO S. Une nouvelle espèce de Streptomyces productrice d'antibiotiques: Streptomyces ambofaciens n. sp., caracteres culturaux. Ann Inst Pasteur (Paris) 1954 Dec;87(6):702–707. [PubMed] [Google Scholar]
  31. Rao R. N., Richardson M. A., Kuhstoss S. Cosmid shuttle vectors for cloning and analysis of Streptomyces DNA. Methods Enzymol. 1987;153:166–198. doi: 10.1016/0076-6879(87)53053-1. [DOI] [PubMed] [Google Scholar]
  32. Reed K. C., Mann D. A. Rapid transfer of DNA from agarose gels to nylon membranes. Nucleic Acids Res. 1985 Oct 25;13(20):7207–7221. doi: 10.1093/nar/13.20.7207. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Richardson M. A., Kuhstoss S., Solenberg P., Schaus N. A., Rao R. N. A new shuttle cosmid vector, pKC505, for streptomycetes: its use in the cloning of three different spiramycin-resistance genes from a Streptomyces ambofaciens library. Gene. 1987;61(3):231–241. doi: 10.1016/0378-1119(87)90187-9. [DOI] [PubMed] [Google Scholar]
  34. Richardson M. A., Mabe J. A., Beerman N. E., Nakatsukasa W. M., Fayerman J. T. Development of cloning vehicles from the Streptomyces plasmid pFJ103. Gene. 1982 Dec;20(3):451–457. doi: 10.1016/0378-1119(82)90214-1. [DOI] [PubMed] [Google Scholar]
  35. Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
  36. Rosenberg S. M., Stahl M. M., Kobayashi I., Stahl F. W. Improved in vitro packaging of coliphage lambda DNA: a one-strain system free from endogenous phage. Gene. 1985;38(1-3):165–175. doi: 10.1016/0378-1119(85)90215-x. [DOI] [PubMed] [Google Scholar]
  37. Sherman D. H., Malpartida F., Bibb M. J., Kieser H. M., Bibb M. J., Hopwood D. A. Structure and deduced function of the granaticin-producing polyketide synthase gene cluster of Streptomyces violaceoruber Tü22. EMBO J. 1989 Sep;8(9):2717–2725. doi: 10.1002/j.1460-2075.1989.tb08413.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Stutzman-Engwall K. J., Hutchinson C. R. Multigene families for anthracycline antibiotic production in Streptomyces peucetius. Proc Natl Acad Sci U S A. 1989 May;86(9):3135–3139. doi: 10.1073/pnas.86.9.3135. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Way J. C., Davis M. A., Morisato D., Roberts D. E., Kleckner N. New Tn10 derivatives for transposon mutagenesis and for construction of lacZ operon fusions by transposition. Gene. 1984 Dec;32(3):369–379. doi: 10.1016/0378-1119(84)90012-x. [DOI] [PubMed] [Google Scholar]
  40. Wold M. S., Mallory J. B., Roberts J. D., LeBowitz J. H., McMacken R. Initiation of bacteriophage lambda DNA replication in vitro with purified lambda replication proteins. Proc Natl Acad Sci U S A. 1982 Oct;79(20):6176–6180. doi: 10.1073/pnas.79.20.6176. [DOI] [PMC free article] [PubMed] [Google Scholar]
  41. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 1985;33(1):103–119. doi: 10.1016/0378-1119(85)90120-9. [DOI] [PubMed] [Google Scholar]

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