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. 1993 Dec;2(12):2226–2232. doi: 10.1002/pro.5560021222

Structures of randomly generated mutants of T4 lysozyme show that protein stability can be enhanced by relaxation of strain and by improved hydrogen bonding via bound solvent.

P Pjura 1, B W Matthews 1
PMCID: PMC2142314  PMID: 8298466

Abstract

The structures of three mutants of bacteriophage T4 lysozyme selected using a screen designed to identify thermostable variants are described. Each of the mutants has a substitution involving threonine. Two of the variants, Thr 26-->Ser (T26S) and Thr 151-->Ser (T151S), have increased reversible melting temperatures with respect to the wild-type protein. The third, Ala 93-->Thr (A93T), has essentially the same stability as wild type. Thr 26 is in the wall of the active-site cleft. Its replacement with serine results in the rearrangement of nearby residues, most notably Tyr 18, suggesting that the increase in stability may result from the removal of strain. Thr 151 in the wild-type structure is far from the active site and appears to sterically prevent the access of solvent to a preformed binding site. In the mutant, the removal of the methyl group allows access to the solvent binding site and, in addition, the Ser 151 hydroxyl rotates to a new position so that it also contributes to solvent binding. Residue 93 is in a highly exposed site on the surface of the molecule, and presumably is equally solvent exposed in the unfolded protein. It is, therefore, not surprising that the substitution Ala 93-->Thr does not change stability. The mutant structures show how chemically similar mutations can have different effects on both the structure and stability of the protein, depending on the structural context. The results also illustrate the power of random mutagenesis in obtaining variants with a desired phenotype.(ABSTRACT TRUNCATED AT 250 WORDS)

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Alber T., Sun D. P., Nye J. A., Muchmore D. C., Matthews B. W. Temperature-sensitive mutations of bacteriophage T4 lysozyme occur at sites with low mobility and low solvent accessibility in the folded protein. Biochemistry. 1987 Jun 30;26(13):3754–3758. doi: 10.1021/bi00387a002. [DOI] [PubMed] [Google Scholar]
  2. Bell J. A., Becktel W. J., Sauer U., Baase W. A., Matthews B. W. Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59. Biochemistry. 1992 Apr 14;31(14):3590–3596. doi: 10.1021/bi00129a006. [DOI] [PubMed] [Google Scholar]
  3. Blaber M., Zhang X. J., Matthews B. W. Structural basis of amino acid alpha helix propensity. Science. 1993 Jun 11;260(5114):1637–1640. doi: 10.1126/science.8503008. [DOI] [PubMed] [Google Scholar]
  4. Daopin S., Alber T., Baase W. A., Wozniak J. A., Matthews B. W. Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme. J Mol Biol. 1991 Sep 20;221(2):647–667. doi: 10.1016/0022-2836(91)80079-a. [DOI] [PubMed] [Google Scholar]
  5. Matsumura M., Becktel W. J., Levitt M., Matthews B. W. Stabilization of phage T4 lysozyme by engineered disulfide bonds. Proc Natl Acad Sci U S A. 1989 Sep;86(17):6562–6566. doi: 10.1073/pnas.86.17.6562. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Matsumura M., Matthews B. W. Control of enzyme activity by an engineered disulfide bond. Science. 1989 Feb 10;243(4892):792–794. doi: 10.1126/science.2916125. [DOI] [PubMed] [Google Scholar]
  7. Matthews B. W. Genetic and structural analysis of the protein stability problem. Biochemistry. 1987 Nov 3;26(22):6885–6888. doi: 10.1021/bi00396a001. [DOI] [PubMed] [Google Scholar]
  8. Matthews B. W., Nicholson H., Becktel W. J. Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc Natl Acad Sci U S A. 1987 Oct;84(19):6663–6667. doi: 10.1073/pnas.84.19.6663. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Matthews B. W. Structural and genetic analysis of protein stability. Annu Rev Biochem. 1993;62:139–160. doi: 10.1146/annurev.bi.62.070193.001035. [DOI] [PubMed] [Google Scholar]
  10. Nicholson H., Anderson D. E., Dao-pin S., Matthews B. W. Analysis of the interaction between charged side chains and the alpha-helix dipole using designed thermostable mutants of phage T4 lysozyme. Biochemistry. 1991 Oct 15;30(41):9816–9828. doi: 10.1021/bi00105a002. [DOI] [PubMed] [Google Scholar]
  11. Pjura P., Matsumura M., Baase W. A., Matthews B. W. Development of an in vivo method to identify mutants of phage T4 lysozyme of enhanced thermostability. Protein Sci. 1993 Dec;2(12):2217–2225. doi: 10.1002/pro.5560021221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Zhang X. J., Baase W. A., Matthews B. W. Toward a simplification of the protein folding problem: a stabilizing polyalanine alpha-helix engineered in T4 lysozyme. Biochemistry. 1991 Feb 26;30(8):2012–2017. doi: 10.1021/bi00222a001. [DOI] [PubMed] [Google Scholar]

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