Abstract
Crystal structures of four mutants of bovine pancreatic trypsin inhibitor (F22A, Y23A, N43G, and F45A), engineered to alter their stability properties, have been determined. The mutated residues, which are highly conserved among Kunitz-type inhibitors, are located in the rigid core of the molecule. Replacement of the partially buried bulky residues of the wild-type protein with smaller residues resulted in crevices open to the exterior of the molecule. The overall three-dimensional structure of these mutants is very similar to that of the wild-type protein and only small rearrangements are observed among the atoms lining the crevices.
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- Berndt K. D., Güntert P., Orbons L. P., Wüthrich K. Determination of a high-quality nuclear magnetic resonance solution structure of the bovine pancreatic trypsin inhibitor and comparison with three crystal structures. J Mol Biol. 1992 Oct 5;227(3):757–775. doi: 10.1016/0022-2836(92)90222-6. [DOI] [PubMed] [Google Scholar]
- Brown L. R., De Marco A., Richarz R., Wagner G., Wüthrich K. The influence of a single salt bridge on static and dynamic features of the globular solution conformation of the basic pancreatic trypsin inhibitor. 1H and 13C nuclear-magnetic-resonance studies of the native and the transaminated inhibitor. Eur J Biochem. 1978 Jul 17;88(1):87–95. doi: 10.1111/j.1432-1033.1978.tb12425.x. [DOI] [PubMed] [Google Scholar]
- Brünger A. T., Kuriyan J., Karplus M. Crystallographic R factor refinement by molecular dynamics. Science. 1987 Jan 23;235(4787):458–460. doi: 10.1126/science.235.4787.458. [DOI] [PubMed] [Google Scholar]
- Creighton T. E., Charles I. G. Biosynthesis, processing, and evolution of bovine pancreatic trypsin inhibitor. Cold Spring Harb Symp Quant Biol. 1987;52:511–519. doi: 10.1101/sqb.1987.052.01.058. [DOI] [PubMed] [Google Scholar]
- Eriksson A. E., Baase W. A., Zhang X. J., Heinz D. W., Blaber M., Baldwin E. P., Matthews B. W. Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science. 1992 Jan 10;255(5041):178–183. doi: 10.1126/science.1553543. [DOI] [PubMed] [Google Scholar]
- Goldenberg D. P., Berger J. M., Laheru D. A., Wooden S., Zhang J. X. Genetic dissection of pancreatic trypsin inhibitor. Proc Natl Acad Sci U S A. 1992 Jun 1;89(11):5083–5087. doi: 10.1073/pnas.89.11.5083. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Goldenberg D. P., Frieden R. W., Haack J. A., Morrison T. B. Mutational analysis of a protein-folding pathway. Nature. 1989 Mar 9;338(6211):127–132. doi: 10.1038/338127a0. [DOI] [PubMed] [Google Scholar]
- Hendrickson W. A. Stereochemically restrained refinement of macromolecular structures. Methods Enzymol. 1985;115:252–270. doi: 10.1016/0076-6879(85)15021-4. [DOI] [PubMed] [Google Scholar]
- Housset D., Kim K. S., Fuchs J., Woodward C., Wlodawer A. Crystal structure of a Y35G mutant of bovine pancreatic trypsin inhibitor. J Mol Biol. 1991 Aug 5;220(3):757–770. doi: 10.1016/0022-2836(91)90115-m. [DOI] [PubMed] [Google Scholar]
- Jones T. A. Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO. Methods Enzymol. 1985;115:157–171. doi: 10.1016/0076-6879(85)15014-7. [DOI] [PubMed] [Google Scholar]
- Kim K. S., Tao F., Fuchs J., Danishefsky A. T., Housset D., Wlodawer A., Woodward C. Crevice-forming mutants of bovine pancreatic trypsin inhibitor: stability changes and new hydrophobic surface. Protein Sci. 1993 Apr;2(4):588–596. doi: 10.1002/pro.5560020410. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kitaguchi N., Takahashi Y., Tokushima Y., Shiojiri S., Ito H. Novel precursor of Alzheimer's disease amyloid protein shows protease inhibitory activity. Nature. 1988 Feb 11;331(6156):530–532. doi: 10.1038/331530a0. [DOI] [PubMed] [Google Scholar]
- Otting G., Liepinsh E., Wüthrich K. Protein hydration in aqueous solution. Science. 1991 Nov 15;254(5034):974–980. doi: 10.1126/science.1948083. [DOI] [PubMed] [Google Scholar]
- Ponte P., Gonzalez-DeWhitt P., Schilling J., Miller J., Hsu D., Greenberg B., Davis K., Wallace W., Lieberburg I., Fuller F. A new A4 amyloid mRNA contains a domain homologous to serine proteinase inhibitors. Nature. 1988 Feb 11;331(6156):525–527. doi: 10.1038/331525a0. [DOI] [PubMed] [Google Scholar]
- Rühlmann A., Kukla D., Schwager P., Bartels K., Huber R. Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. Crystal structure determination and stereochemistry of the contact region. J Mol Biol. 1973 Jul 5;77(3):417–436. doi: 10.1016/0022-2836(73)90448-8. [DOI] [PubMed] [Google Scholar]
- Satow Y., Cohen G. H., Padlan E. A., Davies D. R. Phosphocholine binding immunoglobulin Fab McPC603. An X-ray diffraction study at 2.7 A. J Mol Biol. 1986 Aug 20;190(4):593–604. doi: 10.1016/0022-2836(86)90245-7. [DOI] [PubMed] [Google Scholar]
- Skarzyński T. Crystal structure of alpha-dendrotoxin from the green mamba venom and its comparison with the structure of bovine pancreatic trypsin inhibitor. J Mol Biol. 1992 Apr 5;224(3):671–683. doi: 10.1016/0022-2836(92)90552-u. [DOI] [PubMed] [Google Scholar]
- Tanzi R. E., McClatchey A. I., Lamperti E. D., Villa-Komaroff L., Gusella J. F., Neve R. L. Protease inhibitor domain encoded by an amyloid protein precursor mRNA associated with Alzheimer's disease. Nature. 1988 Feb 11;331(6156):528–530. doi: 10.1038/331528a0. [DOI] [PubMed] [Google Scholar]
- Thanki N., Umrania Y., Thornton J. M., Goodfellow J. M. Analysis of protein main-chain solvation as a function of secondary structure. J Mol Biol. 1991 Sep 20;221(2):669–691. doi: 10.1016/0022-2836(91)80080-e. [DOI] [PubMed] [Google Scholar]
- Tüchsen E., Hayes J. M., Ramaprasad S., Copie V., Woodward C. Solvent exchange of buried water and hydrogen exchange of peptide NH groups hydrogen bonded to buried waters in bovine pancreatic trypsin inhibitor. Biochemistry. 1987 Aug 11;26(16):5163–5172. doi: 10.1021/bi00390a040. [DOI] [PubMed] [Google Scholar]
- Tüchsen E., Woodward C. Hydrogen kinetics of peptide amide protons at the bovine pancreatic trypsin inhibitor protein-solvent interface. J Mol Biol. 1985 Sep 20;185(2):405–419. doi: 10.1016/0022-2836(85)90412-7. [DOI] [PubMed] [Google Scholar]
- Vincent J. P., Lazdunski M. Trypsin-pancreatic trypsin inhibitor association. Dynamics of the interaction and role of disulfide bridges. Biochemistry. 1972 Aug 1;11(16):2967–2977. doi: 10.1021/bi00766a007. [DOI] [PubMed] [Google Scholar]
- Wagner G., Wüthrich K. Amide protein exchange and surface conformation of the basic pancreatic trypsin inhibitor in solution. Studies with two-dimensional nuclear magnetic resonance. J Mol Biol. 1982 Sep 15;160(2):343–361. doi: 10.1016/0022-2836(82)90180-2. [DOI] [PubMed] [Google Scholar]
- Wlodawer A., Deisenhofer J., Huber R. Comparison of two highly refined structures of bovine pancreatic trypsin inhibitor. J Mol Biol. 1987 Jan 5;193(1):145–156. doi: 10.1016/0022-2836(87)90633-4. [DOI] [PubMed] [Google Scholar]
- Wlodawer A., Hodgson K. O. Crystallization and crystal data of monellin. Proc Natl Acad Sci U S A. 1975 Jan;72(1):398–399. doi: 10.1073/pnas.72.1.398. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wlodawer A., Nachman J., Gilliland G. L., Gallagher W., Woodward C. Structure of form III crystals of bovine pancreatic trypsin inhibitor. J Mol Biol. 1987 Dec 5;198(3):469–480. doi: 10.1016/0022-2836(87)90294-4. [DOI] [PubMed] [Google Scholar]
- Wlodawer A., Walter J., Huber R., Sjölin L. Structure of bovine pancreatic trypsin inhibitor. Results of joint neutron and X-ray refinement of crystal form II. J Mol Biol. 1984 Dec 5;180(2):301–329. doi: 10.1016/s0022-2836(84)80006-6. [DOI] [PubMed] [Google Scholar]
- Wun T. C., Kretzmer K. K., Girard T. J., Miletich J. P., Broze G. J., Jr Cloning and characterization of a cDNA coding for the lipoprotein-associated coagulation inhibitor shows that it consists of three tandem Kunitz-type inhibitory domains. J Biol Chem. 1988 May 5;263(13):6001–6004. [PubMed] [Google Scholar]