Skip to main content
Protein Science : A Publication of the Protein Society logoLink to Protein Science : A Publication of the Protein Society
. 1993 Mar;2(3):429–435. doi: 10.1002/pro.5560020315

Structure of recombinant ricin A chain at 2.3 A.

D Mlsna 1, A F Monzingo 1, B J Katzin 1, S Ernst 1, J D Robertus 1
PMCID: PMC2142378  PMID: 8453380

Abstract

The plant cytotoxin ricin is a heterodimer with a cell surface binding (B) chain and an enzymatically active A chain (RTA) known to act as a specific N-glycosidase. RTA must be separated from B chain to attack rRNA. The X-ray structure of ricin has been solved recently; here we report the structure of the isolated A chain expressed from a clone in Escherichia coli. This structure of wild-type rRTA has and will continue to serve as the parent compound for difference Fouriers used to assess the structure of site-directed mutants designed to analyze the mechanism of this medically and commercially important toxin. The structure of the recombinant protein, rRTA, is virtually identical to that seen previously for A chain in the heterodimeric toxin. Some minor conformational changes due to interactions with B chain and to crystal packing differences are described. Perhaps the most significant difference is the presence in rRTA of an additional active site water. This molecule is positioned to act as the ultimate nucleophile in the depurination reaction mechanism proposed by Monzingo and Robertus (1992, J. Mol. Biol. 227, 1136-1145).

Full Text

The Full Text of this article is available as a PDF (558.4 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Brünger A. T., Kuriyan J., Karplus M. Crystallographic R factor refinement by molecular dynamics. Science. 1987 Jan 23;235(4787):458–460. doi: 10.1126/science.235.4787.458. [DOI] [PubMed] [Google Scholar]
  2. Bushuev V., Tonevitsky A. High mobility of N-terminal parts of A and B subunits of ricin. J Biomol Struct Dyn. 1989 Jun;6(6):1061–1070. doi: 10.1080/07391102.1989.10506536. [DOI] [PubMed] [Google Scholar]
  3. Endo Y., Tsurugi K. The RNA N-glycosidase activity of ricin A-chain. The characteristics of the enzymatic activity of ricin A-chain with ribosomes and with rRNA. J Biol Chem. 1988 Jun 25;263(18):8735–8739. [PubMed] [Google Scholar]
  4. Frankel A., Welsh P., Richardson J., Robertus J. D. Role of arginine 180 and glutamic acid 177 of ricin toxin A chain in enzymatic inactivation of ribosomes. Mol Cell Biol. 1990 Dec;10(12):6257–6263. doi: 10.1128/mcb.10.12.6257. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Hamlin R. Multiwire area X-ray diffractometers. Methods Enzymol. 1985;114:416–452. doi: 10.1016/0076-6879(85)14029-2. [DOI] [PubMed] [Google Scholar]
  6. Katzin B. J., Collins E. J., Robertus J. D. Structure of ricin A-chain at 2.5 A. Proteins. 1991;10(3):251–259. doi: 10.1002/prot.340100309. [DOI] [PubMed] [Google Scholar]
  7. Kim Y., Mlsna D., Monzingo A. F., Ready M. P., Frankel A., Robertus J. D. Structure of a ricin mutant showing rescue of activity by a noncatalytic residue. Biochemistry. 1992 Mar 31;31(12):3294–3296. doi: 10.1021/bi00127a035. [DOI] [PubMed] [Google Scholar]
  8. Kim Y., Robertus J. D. Analysis of several key active site residues of ricin A chain by mutagenesis and X-ray crystallography. Protein Eng. 1992 Dec;5(8):775–779. doi: 10.1093/protein/5.8.775. [DOI] [PubMed] [Google Scholar]
  9. Lord J. M., Hartley M. R., Roberts L. M. Ribosome inactivating proteins of plants. Semin Cell Biol. 1991 Feb;2(1):15–22. [PubMed] [Google Scholar]
  10. Montfort W., Villafranca J. E., Monzingo A. F., Ernst S. R., Katzin B., Rutenber E., Xuong N. H., Hamlin R., Robertus J. D. The three-dimensional structure of ricin at 2.8 A. J Biol Chem. 1987 Apr 15;262(11):5398–5403. [PubMed] [Google Scholar]
  11. Monzingo A. F., Robertus J. D. X-ray analysis of substrate analogs in the ricin A-chain active site. J Mol Biol. 1992 Oct 20;227(4):1136–1145. doi: 10.1016/0022-2836(92)90526-p. [DOI] [PubMed] [Google Scholar]
  12. Ready M. P., Kim Y., Robertus J. D. Site-directed mutagenesis of ricin A-chain and implications for the mechanism of action. Proteins. 1991;10(3):270–278. doi: 10.1002/prot.340100311. [DOI] [PubMed] [Google Scholar]
  13. Robertus J. D., Piatak M., Ferris R., Houston L. L. Crystallization of ricin A chain obtained from a cloned gene expressed in Escherichia coli. J Biol Chem. 1987 Jan 5;262(1):19–20. [PubMed] [Google Scholar]
  14. Rutenber E., Katzin B. J., Ernst S., Collins E. J., Mlsna D., Ready M. P., Robertus J. D. Crystallographic refinement of ricin to 2.5 A. Proteins. 1991;10(3):240–250. doi: 10.1002/prot.340100308. [DOI] [PubMed] [Google Scholar]
  15. Rutenber E., Robertus J. D. Structure of ricin B-chain at 2.5 A resolution. Proteins. 1991;10(3):260–269. doi: 10.1002/prot.340100310. [DOI] [PubMed] [Google Scholar]
  16. Sussman J. L. Constrained-restrained least-squares (CORELS) refinement of proteins and nucleic acids. Methods Enzymol. 1985;115:271–303. doi: 10.1016/0076-6879(85)15022-6. [DOI] [PubMed] [Google Scholar]
  17. Villafranca J. E., Robertus J. D. Crystallographic study of the anti-tumor protein ricin. J Mol Biol. 1977 Oct 25;116(2):331–335. doi: 10.1016/0022-2836(77)90220-0. [DOI] [PubMed] [Google Scholar]
  18. Vitetta E. S., Thorpe P. E. Immunotoxins containing ricin or its A chain. Semin Cell Biol. 1991 Feb;2(1):47–58. [PubMed] [Google Scholar]

Articles from Protein Science : A Publication of the Protein Society are provided here courtesy of The Protein Society

RESOURCES