Abstract
Using high-sensitivity differential scanning calorimetry, we reexamined the thermodynamics of denaturation of staphylococcal nuclease. The denaturational changes in enthalpy and heat capacity were found to be functions of both temperature and pH. The denatured state of staphylococcal nuclease at pH 8.0 and high temperature has a heat capacity consistent with a fully unfolded protein completely exposed to solvent. At lower pH values, however, the heat capacity of the denatured state is lower, resulting in a lower delta Cp and delta H for the denaturation reaction. The acid-denatured protein can thus be distinguished from a completely unfolded protein by a defined difference in enthalpy and heat capacity. Comparison of circular dichroism spectra suggests that the low heat capacity of the acid-denatured protein does not result from residual helical secondary structure. The enthalpy and heat capacity changes of denaturation of a less stable mutant nuclease support the observed dependence of delta H on pH.
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- Alexandrescu A. T., Mills D. A., Ulrich E. L., Chinami M., Markley J. L. NMR assignments of the four histidines of staphylococcal nuclease in native and denatured states. Biochemistry. 1988 Mar 22;27(6):2158–2165. doi: 10.1021/bi00406a051. [DOI] [PubMed] [Google Scholar]
- Alonso D. O., Dill K. A., Stigter D. The three states of globular proteins: acid denaturation. Biopolymers. 1991 Nov;31(13):1631–1649. doi: 10.1002/bip.360311317. [DOI] [PubMed] [Google Scholar]
- Calderon R. O., Stolowich N. J., Gerlt J. A., Sturtevant J. M. Thermal denaturation of staphylococcal nuclease. Biochemistry. 1985 Oct 22;24(22):6044–6049. doi: 10.1021/bi00343a004. [DOI] [PubMed] [Google Scholar]
- Carra J. H., Anderson E. A., Privalov P. L. Thermodynamics of staphylococcal nuclease denaturation. II. The A-state. Protein Sci. 1994 Jun;3(6):952–959. doi: 10.1002/pro.5560030610. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cuatrecasas P., Taniuchi H., Anfinsen C. B. The structural basis of the catalytic function of staphylococcal nuclease. Brookhaven Symp Biol. 1968 Jun;21(1):172–200. [PubMed] [Google Scholar]
- Dill K. A., Shortle D. Denatured states of proteins. Annu Rev Biochem. 1991;60:795–825. doi: 10.1146/annurev.bi.60.070191.004051. [DOI] [PubMed] [Google Scholar]
- Dryden D., Weir M. P. Evidence for an acid-induced molten-globule state in interleukin-2; a fluorescence and circular dichroism study. Biochim Biophys Acta. 1991 May 30;1078(1):94–100. doi: 10.1016/0167-4838(91)90097-j. [DOI] [PubMed] [Google Scholar]
- Epstein H. F., Schechter A. N., Chen R. F., Anfinsen C. B. Folding of staphylococcal nuclease: kinetic studies of two processes in acid renaturation. J Mol Biol. 1971 Sep 28;60(3):499–508. doi: 10.1016/0022-2836(71)90184-7. [DOI] [PubMed] [Google Scholar]
- Evans P. A., Topping K. D., Woolfson D. N., Dobson C. M. Hydrophobic clustering in nonnative states of a protein: interpretation of chemical shifts in NMR spectra of denatured states of lysozyme. Proteins. 1991;9(4):248–266. doi: 10.1002/prot.340090404. [DOI] [PubMed] [Google Scholar]
- Fink A. L., Calciano L. J., Goto Y., Nishimura M., Swedberg S. A. Characterization of the stable, acid-induced, molten globule-like state of staphylococcal nuclease. Protein Sci. 1993 Jul;2(7):1155–1160. doi: 10.1002/pro.5560020710. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Flanagan J. M., Kataoka M., Fujisawa T., Engelman D. M. Mutations can cause large changes in the conformation of a denatured protein. Biochemistry. 1993 Oct 5;32(39):10359–10370. doi: 10.1021/bi00090a011. [DOI] [PubMed] [Google Scholar]
- Flanagan J. M., Kataoka M., Shortle D., Engelman D. M. Truncated staphylococcal nuclease is compact but disordered. Proc Natl Acad Sci U S A. 1992 Jan 15;89(2):748–752. doi: 10.1073/pnas.89.2.748. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gittis A. G., Stites W. E., Lattman E. E. The phase transition between a compact denatured state and a random coil state in staphylococcal nuclease is first-order. J Mol Biol. 1993 Aug 5;232(3):718–724. doi: 10.1006/jmbi.1993.1425. [DOI] [PubMed] [Google Scholar]
- Goto Y., Calciano L. J., Fink A. L. Acid-induced folding of proteins. Proc Natl Acad Sci U S A. 1990 Jan;87(2):573–577. doi: 10.1073/pnas.87.2.573. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haynie D. T., Freire E. Structural energetics of the molten globule state. Proteins. 1993 Jun;16(2):115–140. doi: 10.1002/prot.340160202. [DOI] [PubMed] [Google Scholar]
- Heins J. N., Suriano J. R., Taniuchi H., Anfinsen C. B. Characterization of a nuclease produced by Staphylococcus aureus. J Biol Chem. 1967 Mar 10;242(5):1016–1020. [PubMed] [Google Scholar]
- James E., Wu P. G., Stites W., Brand L. Compact denatured state of a staphylococcal nuclease mutant by guanidinium as determined by resonance energy transfer. Biochemistry. 1992 Oct 27;31(42):10217–10225. doi: 10.1021/bi00157a008. [DOI] [PubMed] [Google Scholar]
- Loll P. J., Lattman E. E. The crystal structure of the ternary complex of staphylococcal nuclease, Ca2+, and the inhibitor pdTp, refined at 1.65 A. Proteins. 1989;5(3):183–201. doi: 10.1002/prot.340050302. [DOI] [PubMed] [Google Scholar]
- Makhatadze G. I., Privalov P. L. Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration. J Mol Biol. 1993 Jul 20;232(2):639–659. doi: 10.1006/jmbi.1993.1416. [DOI] [PubMed] [Google Scholar]
- Makhatadze G. I., Privalov P. L. Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solution: hydration effect. J Mol Biol. 1990 May 20;213(2):375–384. doi: 10.1016/S0022-2836(05)80197-4. [DOI] [PubMed] [Google Scholar]
- Makhatadze G. I., Privalov P. L. Protein interactions with urea and guanidinium chloride. A calorimetric study. J Mol Biol. 1992 Jul 20;226(2):491–505. doi: 10.1016/0022-2836(92)90963-k. [DOI] [PubMed] [Google Scholar]
- Miller W. G., Goebel C. V. Dimensions of protein random coils. Biochemistry. 1968 Nov;7(11):3925–3935. doi: 10.1021/bi00851a021. [DOI] [PubMed] [Google Scholar]
- Nakano T., Fink A. L. The folding of staphylococcal nuclease in the presence of methanol or guanidine thiocyanate. J Biol Chem. 1990 Jul 25;265(21):12356–12362. [PubMed] [Google Scholar]
- Pfeil W., Privalov P. L. Thermodynamic investigations of proteins. III. Thermodynamic description of lysozyme. Biophys Chem. 1976 Jan;4(1):41–50. doi: 10.1016/0301-4622(76)80005-1. [DOI] [PubMed] [Google Scholar]
- Privalov P. L., Khechinashvili N. N. A thermodynamic approach to the problem of stabilization of globular protein structure: a calorimetric study. J Mol Biol. 1974 Jul 5;86(3):665–684. doi: 10.1016/0022-2836(74)90188-0. [DOI] [PubMed] [Google Scholar]
- Privalov P. L. Stability of proteins: small globular proteins. Adv Protein Chem. 1979;33:167–241. doi: 10.1016/s0065-3233(08)60460-x. [DOI] [PubMed] [Google Scholar]
- Privalov P. L., Tiktopulo E. I., Venyaminov SYu, Griko YuV, Makhatadze G. I., Khechinashvili N. N. Heat capacity and conformation of proteins in the denatured state. J Mol Biol. 1989 Feb 20;205(4):737–750. doi: 10.1016/0022-2836(89)90318-5. [DOI] [PubMed] [Google Scholar]
- Shortle D., Meeker A. K., Freire E. Stability mutants of staphylococcal nuclease: large compensating enthalpy-entropy changes for the reversible denaturation reaction. Biochemistry. 1988 Jun 28;27(13):4761–4768. doi: 10.1021/bi00413a027. [DOI] [PubMed] [Google Scholar]
- Tanaka A., Flanagan J., Sturtevant J. M. Thermal unfolding of staphylococcal nuclease and several mutant forms thereof studied by differential scanning calorimetry. Protein Sci. 1993 Apr;2(4):567–576. doi: 10.1002/pro.5560020408. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tanford C. Protein denaturation. Adv Protein Chem. 1968;23:121–282. doi: 10.1016/s0065-3233(08)60401-5. [DOI] [PubMed] [Google Scholar]
- Wu P. G., James E., Brand L. Compact thermally-denatured state of a staphylococcal nuclease mutant from resonance energy transfer measurements. Biophys Chem. 1993 Dec;48(2):123–133. doi: 10.1016/0301-4622(93)85004-2. [DOI] [PubMed] [Google Scholar]