Abstract
The thermal unfolding process of a chimeric 3-isopropylmalate dehydrogenase made of parts from an extreme thermophile, Thermus thermophilus, and a mesophile, Bacillus subtilis, enzymes was studied by CD spectrophotometry and differential scanning calorimetry (DSC). The enzyme is a homodimer with a subunit containing two structural domains. The DSC melting profile of the chimeric enzyme in 20 mM NaHCO3, pH 10.4, showed two endothermic peaks, whereas that of the T. thermophilus wild-type enzyme had one peak. The CD melting profiles of the chimeric enzyme under the same conditions as the DSC measurement, also indicated biphasic unfolding transition. Concentration dependence of the unfolding profile revealed that the first phase was protein concentration-independent, whereas the second transition was protein concentration-dependent. When cooled after the first transition, the intermediate was isolated, which showed only the second transition upon heating. These results indicated the existence of a stable dimeric intermediate followed by the further unfolding and dissociation in the thermal unfolding of the chimeric enzyme at pH 10-11. Because the portion derived from the mesophilic isopropylmalate dehydrogenase in the chimeric enzyme is located in the hinge region between two domains of the enzyme, it is probably responsible for weakening of the interdomain interaction and causing the decooperativity of two domains. The dimeric form of the intermediate suggested that the first unfolding transition corresponds to the unfolding of domain 1 containing the N- and C-termini of the enzyme, and the second to that of domain 2 containing the subunit interface.
Full Text
The Full Text of this article is available as a PDF (1.5 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Brandts J. F., Hu C. Q., Lin L. N., Mos M. T. A simple model for proteins with interacting domains. Applications to scanning calorimetry data. Biochemistry. 1989 Oct 17;28(21):8588–8596. doi: 10.1021/bi00447a048. [DOI] [PubMed] [Google Scholar]
- Carra J. H., Anderson E. A., Privalov P. L. Three-state thermodynamic analysis of the denaturation of staphylococcal nuclease mutants. Biochemistry. 1994 Sep 6;33(35):10842–10850. doi: 10.1021/bi00201a035. [DOI] [PubMed] [Google Scholar]
- Freire E., Murphy K. P., Sanchez-Ruiz J. M., Galisteo M. L., Privalov P. L. The molecular basis of cooperativity in protein folding. Thermodynamic dissection of interdomain interactions in phosphoglycerate kinase. Biochemistry. 1992 Jan 14;31(1):250–256. doi: 10.1021/bi00116a034. [DOI] [PubMed] [Google Scholar]
- Freire E., van Osdol W. W., Mayorga O. L., Sanchez-Ruiz J. M. Calorimetrically determined dynamics of complex unfolding transitions in proteins. Annu Rev Biophys Biophys Chem. 1990;19:159–188. doi: 10.1146/annurev.bb.19.060190.001111. [DOI] [PubMed] [Google Scholar]
- Goto Y., Fink A. L. Conformational states of beta-lactamase: molten-globule states at acidic and alkaline pH with high salt. Biochemistry. 1989 Feb 7;28(3):945–952. doi: 10.1021/bi00429a004. [DOI] [PubMed] [Google Scholar]
- Imada K., Sato M., Tanaka N., Katsube Y., Matsuura Y., Oshima T. Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution. J Mol Biol. 1991 Dec 5;222(3):725–738. doi: 10.1016/0022-2836(91)90508-4. [DOI] [PubMed] [Google Scholar]
- Imai R., Sekiguchi T., Nosoh Y., Tsuda K. The nucleotide sequence of 3-isopropylmalate dehydrogenase gene from Bacillus subtilis. Nucleic Acids Res. 1987 Jun 25;15(12):4988–4988. doi: 10.1093/nar/15.12.4988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mas M. T., Chen H. H., Aisaka K., Lin L. N., Brandts J. F. Effects of C-terminal deletions on the conformational state and denaturation of phosphoglycerate kinase. Biochemistry. 1995 Jun 20;34(24):7931–7940. doi: 10.1021/bi00024a018. [DOI] [PubMed] [Google Scholar]
- Onodera K., Sakurai M., Moriyama H., Tanaka N., Numata K., Oshima T., Sato M., Katsube Y. Three-dimensional structures of chimeric enzymes between Bacillus subtilis and Thermus thermophilus 3-isopropylmalate dehydrogenases. Protein Eng. 1994 Apr;7(4):453–459. doi: 10.1093/protein/7.4.453. [DOI] [PubMed] [Google Scholar]
- Sánchez-Ruiz J. M., López-Lacomba J. L., Cortijo M., Mateo P. L. Differential scanning calorimetry of the irreversible thermal denaturation of thermolysin. Biochemistry. 1988 Mar 8;27(5):1648–1652. doi: 10.1021/bi00405a039. [DOI] [PubMed] [Google Scholar]
- Yamada T., Akutsu N., Miyazaki K., Kakinuma K., Yoshida M., Oshima T. Purification, catalytic properties, and thermal stability of threo-Ds-3-isopropylmalate dehydrogenase coded by leuB gene from an extreme thermophile, Thermus thermophilus strain HB8. J Biochem. 1990 Sep;108(3):449–456. doi: 10.1093/oxfordjournals.jbchem.a123220. [DOI] [PubMed] [Google Scholar]