Abstract
The unique biochemical properties of acetate kinase present a classic conundrum in the study of the mechanism of enzyme-catalyzed phosphoryl transfer. Large, single crystals of acetate kinase from Methanosarcina thermophila were grown from a solution of ammonium sulfate in the presence of ATP. The crystals diffract to beyond 1.7 A resolution. Analysis of X-ray data from the crystals is consistent with a space group of C2 and unit cell dimensions a = 181 A, b = 67 A, c = 83 A, beta = 103 degrees. Diffraction data have been collected from the crystals at 110 and 277 K. Data collected at 277 K extend to lower resolution, but are more reproducible. The orientation of a noncrystallographic two-fold axis of symmetry has been determined. Based on an analysis of the predicted amino acid sequences of acetate kinase from several organisms, we hypothesize that acetate kinase is a member of the sugar kinase/actin/hsp70 structural family.
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- Aceti D. J., Ferry J. G. Purification and characterization of acetate kinase from acetate-grown Methanosarcina thermophila. Evidence for regulation of synthesis. J Biol Chem. 1988 Oct 25;263(30):15444–15448. [PubMed] [Google Scholar]
- Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
- Anthony R. S., Spector L. B. A phosphoenzyme intermediary in acetate kinase action. J Biol Chem. 1970 Dec 25;245(24):6739–6741. [PubMed] [Google Scholar]
- Anthony R. S., Spector L. B. Phosphorylated acetate kinase. Its isolation and reactivity. J Biol Chem. 1972 Apr 10;247(7):2120–2125. [PubMed] [Google Scholar]
- Blättler W. A., Knowles J. R. Stereochemical course of phosphokinases. The use of adenosine [gamma-(S)-16O,17O,18O]triphosphate and the mechanistic consequences for the reactions catalyzed by glycerol kinase, hexokinase, pyruvate kinase, and acetate kinase. Biochemistry. 1979 Sep 4;18(18):3927–3933. doi: 10.1021/bi00585a013. [DOI] [PubMed] [Google Scholar]
- Das S., Yu L., Gaitatzes C., Rogers R., Freeman J., Bienkowska J., Adams R. M., Smith T. F., Lindelien J. Biology's new Rosetta stone. Nature. 1997 Jan 2;385(6611):29–30. doi: 10.1038/385029a0. [DOI] [PubMed] [Google Scholar]
- Ferry J. G. Enzymology of the fermentation of acetate to methane by Methanosarcina thermophila. Biofactors. 1997;6(1):25–35. doi: 10.1002/biof.5520060104. [DOI] [PubMed] [Google Scholar]
- Flaherty K. M., McKay D. B., Kabsch W., Holmes K. C. Similarity of the three-dimensional structures of actin and the ATPase fragment of a 70-kDa heat shock cognate protein. Proc Natl Acad Sci U S A. 1991 Jun 1;88(11):5041–5045. doi: 10.1073/pnas.88.11.5041. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fox D. K., Meadow N. D., Roseman S. Phosphate transfer between acetate kinase and enzyme I of the bacterial phosphotransferase system. J Biol Chem. 1986 Oct 15;261(29):13498–13503. [PubMed] [Google Scholar]
- Fox D. K., Roseman S. Isolation and characterization of homogeneous acetate kinase from Salmonella typhimurium and Escherichia coli. J Biol Chem. 1986 Oct 15;261(29):13487–13497. [PubMed] [Google Scholar]
- Holmes K. C., Sander C., Valencia A. A new ATP-binding fold in actin, hexokinase and Hsc70. Trends Cell Biol. 1993 Feb;3(2):53–59. doi: 10.1016/0962-8924(93)90161-s. [DOI] [PubMed] [Google Scholar]
- Hurley J. H. The sugar kinase/heat shock protein 70/actin superfamily: implications of conserved structure for mechanism. Annu Rev Biophys Biomol Struct. 1996;25:137–162. doi: 10.1146/annurev.bb.25.060196.001033. [DOI] [PubMed] [Google Scholar]
- Knowles J. R. Enzyme-catalyzed phosphoryl transfer reactions. Annu Rev Biochem. 1980;49:877–919. doi: 10.1146/annurev.bi.49.070180.004305. [DOI] [PubMed] [Google Scholar]
- Latimer M. T., Ferry J. G. Cloning, sequence analysis, and hyperexpression of the genes encoding phosphotransacetylase and acetate kinase from Methanosarcina thermophila. J Bacteriol. 1993 Nov;175(21):6822–6829. doi: 10.1128/jb.175.21.6822-6829.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matthews B. W. Solvent content of protein crystals. J Mol Biol. 1968 Apr 28;33(2):491–497. doi: 10.1016/0022-2836(68)90205-2. [DOI] [PubMed] [Google Scholar]
- Todhunter J. A., Purich D. L. Evidence for the formation of a gamma-phosphorylated glutamyl residue in the Escherichia coli acetate kinase reaction. Biochem Biophys Res Commun. 1974 Sep 9;60(1):273–280. doi: 10.1016/0006-291x(74)90201-0. [DOI] [PubMed] [Google Scholar]