Abstract
Human glutaredoxin is a member of the glutaredoxin family, which is characterized by a glutathione binding site and a redox-active dithiol/disulfide in the active site. Unlike Escherichia coli glutaredoxin-1, this protein has additional cysteine residues that have been suggested to play a regulatory role in its activity. Human glutaredoxin (106 amino acid residues, M(r) = 12,000) has been purified from a pET expression vector with both uniform 15N labeling and 13C/15N double labeling. The combination of three-dimensional 15N-edited TOCSY, 15N-edited NOESY, HNCA, HN(CO)CA, and gradient sensitivity-enhanced HNCACB and HNCO spectra were used to obtain sequential assignments for residues 2-106 of the protein. The gradient-enhanced version of the HCCH-TOCSY pulse sequence and HCCH-COSY were used to obtain side chain 1H and 13C assignments. The secondary structural elements in the reduced protein were identified based on NOE information, amide proton exchange data, and chemical shift index data. Human glutaredoxin contains five helices extending approximately from residues 4-10, 24-36, 53-64, 83-92, and 94-104. The secondary structure also shows four beta-strands comprised of residues 15-19, 43-48, 71-75, 78-80, which form a beta-sheet almost identical to that found in E. coli glutaredoxin-1. Complete 1H, 13C, and 15N assignments and the secondary structure of fully reduced human glutaredoxin are presented. Comparison to the structures of other glutaredoxins is presented and differences in the secondary structure elements are discussed.
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- Ahn B. Y., Moss B. Glutaredoxin homolog encoded by vaccinia virus is a virion-associated enzyme with thioltransferase and dehydroascorbate reductase activities. Proc Natl Acad Sci U S A. 1992 Aug 1;89(15):7060–7064. doi: 10.1073/pnas.89.15.7060. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Aslund F., Nordstrand K., Berndt K. D., Nikkola M., Bergman T., Ponstingl H., Jörnvall H., Otting G., Holmgren A. Glutaredoxin-3 from Escherichia coli. Amino acid sequence, 1H AND 15N NMR assignments, and structural analysis. J Biol Chem. 1996 Mar 22;271(12):6736–6745. doi: 10.1074/jbc.271.12.6736. [DOI] [PubMed] [Google Scholar]
- Bushweller J. H., Billeter M., Holmgren A., Wüthrich K. The nuclear magnetic resonance solution structure of the mixed disulfide between Escherichia coli glutaredoxin(C14S) and glutathione. J Mol Biol. 1994 Feb 4;235(5):1585–1597. doi: 10.1006/jmbi.1994.1108. [DOI] [PubMed] [Google Scholar]
- Clubb R. T., Thanabal V., Wagner G. A new 3D HN(CA)HA experiment for obtaining fingerprint HN-Halpha peaks in 15N- and 13C-labeled proteins. J Biomol NMR. 1992 Mar;2(2):203–210. doi: 10.1007/BF01875531. [DOI] [PubMed] [Google Scholar]
- Dyson H. J., Gippert G. P., Case D. A., Holmgren A., Wright P. E. Three-dimensional solution structure of the reduced form of Escherichia coli thioredoxin determined by nuclear magnetic resonance spectroscopy. Biochemistry. 1990 May 1;29(17):4129–4136. doi: 10.1021/bi00469a016. [DOI] [PubMed] [Google Scholar]
- Forman-Kay J. D., Clore G. M., Wingfield P. T., Gronenborn A. M. High-resolution three-dimensional structure of reduced recombinant human thioredoxin in solution. Biochemistry. 1991 Mar 12;30(10):2685–2698. doi: 10.1021/bi00224a017. [DOI] [PubMed] [Google Scholar]
- Gan Z. R., Polokoff M. A., Jacobs J. W., Sardana M. K. Complete amino acid sequence of yeast thioltransferase (glutaredoxin). Biochem Biophys Res Commun. 1990 May 16;168(3):944–951. doi: 10.1016/0006-291x(90)91120-h. [DOI] [PubMed] [Google Scholar]
- Gan Z. R., Wells W. W. Identification and reactivity of the catalytic site of pig liver thioltransferase. J Biol Chem. 1987 May 15;262(14):6704–6707. [PubMed] [Google Scholar]
- Gan Z. R., Wells W. W. The primary structure of pig liver thioltransferase. J Biol Chem. 1987 May 15;262(14):6699–6703. [PubMed] [Google Scholar]
- Gravina S. A., Mieyal J. J. Thioltransferase is a specific glutathionyl mixed disulfide oxidoreductase. Biochemistry. 1993 Apr 6;32(13):3368–3376. doi: 10.1021/bi00064a021. [DOI] [PubMed] [Google Scholar]
- Gronenborn A. M., Bax A., Wingfield P. T., Clore G. M. A powerful method of sequential proton resonance assignment in proteins using relayed 15N-1H multiple quantum coherence spectroscopy. FEBS Lett. 1989 Jan 16;243(1):93–98. doi: 10.1016/0014-5793(89)81224-4. [DOI] [PubMed] [Google Scholar]
- Guigó R., Smith T. F. A common pattern between the TGF-beta family and glutaredoxin. Biochem J. 1991 Dec 15;280(Pt 3):833–834. doi: 10.1042/bj2800833. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holmgren A. Glutathione-dependent synthesis of deoxyribonucleotides. Purification and characterization of glutaredoxin from Escherichia coli. J Biol Chem. 1979 May 10;254(9):3664–3671. [PubMed] [Google Scholar]
- Holmgren A. Hydrogen donor system for Escherichia coli ribonucleoside-diphosphate reductase dependent upon glutathione. Proc Natl Acad Sci U S A. 1976 Jul;73(7):2275–2279. doi: 10.1073/pnas.73.7.2275. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holmgren A. Thioredoxin and glutaredoxin systems. J Biol Chem. 1989 Aug 25;264(24):13963–13966. [PubMed] [Google Scholar]
- Holmgren A. Thioredoxin. Annu Rev Biochem. 1985;54:237–271. doi: 10.1146/annurev.bi.54.070185.001321. [DOI] [PubMed] [Google Scholar]
- Hopper S., Johnson R. S., Vath J. E., Biemann K. Glutaredoxin from rabbit bone marrow. Purification, characterization, and amino acid sequence determined by tandem mass spectrometry. J Biol Chem. 1989 Dec 5;264(34):20438–20447. [PubMed] [Google Scholar]
- Hög J. O., Jörnvall H., Holmgren A., Carlquist M., Persson M. The primary structure of Escherichia coli glutaredoxin. Distant homology with thioredoxins in a superfamily of small proteins with a redox-active cystine disulfide/cysteine dithiol. Eur J Biochem. 1983 Oct 17;136(1):223–232. doi: 10.1111/j.1432-1033.1983.tb07730.x. [DOI] [PubMed] [Google Scholar]
- Ikura M., Kay L. E., Bax A. Improved three-dimensional 1H-13C-1H correlation spectroscopy of a 13C-labeled protein using constant-time evolution. J Biomol NMR. 1991 Sep;1(3):299–304. doi: 10.1007/BF01875522. [DOI] [PubMed] [Google Scholar]
- Ingelman M., Nordlund P., Eklund H. The structure of a reduced mutant T4 glutaredoxin. FEBS Lett. 1995 Aug 21;370(3):209–211. doi: 10.1016/0014-5793(95)00806-k. [DOI] [PubMed] [Google Scholar]
- Jeng M. F., Campbell A. P., Begley T., Holmgren A., Case D. A., Wright P. E., Dyson H. J. High-resolution solution structures of oxidized and reduced Escherichia coli thioredoxin. Structure. 1994 Sep 15;2(9):853–868. doi: 10.1016/s0969-2126(94)00086-7. [DOI] [PubMed] [Google Scholar]
- Johnson G. P., Goebel S. J., Perkus M. E., Davis S. W., Winslow J. P., Paoletti E. Vaccinia virus encodes a protein with similarity to glutaredoxins. Virology. 1991 Mar;181(1):378–381. doi: 10.1016/0042-6822(91)90508-9. [DOI] [PubMed] [Google Scholar]
- Katti S. K., LeMaster D. M., Eklund H. Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution. J Mol Biol. 1990 Mar 5;212(1):167–184. doi: 10.1016/0022-2836(90)90313-B. [DOI] [PubMed] [Google Scholar]
- Katti S. K., Robbins A. H., Yang Y., Wells W. W. Crystal structure of thioltransferase at 2.2 A resolution. Protein Sci. 1995 Oct;4(10):1998–2005. doi: 10.1002/pro.5560041005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Luthman M., Eriksson S., Holmgren A., Thelander L. Glutathione-dependent hydrogen donor system for calf thymus ribonucleoside-diphosphate reductase. Proc Natl Acad Sci U S A. 1979 May;76(5):2158–2162. doi: 10.1073/pnas.76.5.2158. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Luthman M., Holmgren A. Glutaredoxin from calf thymus. Purification to homogeneity. J Biol Chem. 1982 Jun 25;257(12):6686–6690. [PubMed] [Google Scholar]
- Mieyal J. J., Starke D. W., Gravina S. A., Hocevar B. A. Thioltransferase in human red blood cells: kinetics and equilibrium. Biochemistry. 1991 Sep 10;30(36):8883–8891. doi: 10.1021/bi00100a023. [DOI] [PubMed] [Google Scholar]
- Minakuchi K., Yabushita T., Masumura T., Ichihara K., Tanaka K. Cloning and sequence analysis of a cDNA encoding rice glutaredoxin. FEBS Lett. 1994 Jan 10;337(2):157–160. doi: 10.1016/0014-5793(94)80264-5. [DOI] [PubMed] [Google Scholar]
- Papayannopoulos I. A., Gan Z. R., Wells W. W., Biemann K. A revised sequence of calf thymus glutaredoxin. Biochem Biophys Res Commun. 1989 Mar 31;159(3):1448–1454. doi: 10.1016/0006-291x(89)92272-9. [DOI] [PubMed] [Google Scholar]
- Qin J., Clore G. M., Gronenborn A. M. The high-resolution three-dimensional solution structures of the oxidized and reduced states of human thioredoxin. Structure. 1994 Jun 15;2(6):503–522. doi: 10.1016/s0969-2126(00)00051-4. [DOI] [PubMed] [Google Scholar]
- Rance M., Sørensen O. W., Bodenhausen G., Wagner G., Ernst R. R., Wüthrich K. Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filtering. Biochem Biophys Res Commun. 1983 Dec 16;117(2):479–485. doi: 10.1016/0006-291x(83)91225-1. [DOI] [PubMed] [Google Scholar]
- Sodano P., Xia T. H., Bushweller J. H., Björnberg O., Holmgren A., Billeter M., Wüthrich K. Sequence-specific 1H n.m.r. assignments and determination of the three-dimensional structure of reduced Escherichia coli glutaredoxin. J Mol Biol. 1991 Oct 20;221(4):1311–1324. doi: 10.1016/0022-2836(91)90935-y. [DOI] [PubMed] [Google Scholar]
- Wells W. W., Xu D. P., Yang Y. F., Rocque P. A. Mammalian thioltransferase (glutaredoxin) and protein disulfide isomerase have dehydroascorbate reductase activity. J Biol Chem. 1990 Sep 15;265(26):15361–15364. [PubMed] [Google Scholar]
- Wishart D. S., Sykes B. D. The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data. J Biomol NMR. 1994 Mar;4(2):171–180. doi: 10.1007/BF00175245. [DOI] [PubMed] [Google Scholar]
- Xia T. H., Bushweller J. H., Sodano P., Billeter M., Björnberg O., Holmgren A., Wüthrich K. NMR structure of oxidized Escherichia coli glutaredoxin: comparison with reduced E. coli glutaredoxin and functionally related proteins. Protein Sci. 1992 Mar;1(3):310–321. doi: 10.1002/pro.5560010302. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhang O., Kay L. E., Olivier J. P., Forman-Kay J. D. Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques. J Biomol NMR. 1994 Nov;4(6):845–858. doi: 10.1007/BF00398413. [DOI] [PubMed] [Google Scholar]
- Ziegler D. M. Role of reversible oxidation-reduction of enzyme thiols-disulfides in metabolic regulation. Annu Rev Biochem. 1985;54:305–329. doi: 10.1146/annurev.bi.54.070185.001513. [DOI] [PubMed] [Google Scholar]