Skip to main content
Protein Science : A Publication of the Protein Society logoLink to Protein Science : A Publication of the Protein Society
. 1997 Aug;6(8):1612–1620. doi: 10.1002/pro.5560060802

The X-ray structure of a mutant eye lens beta B2-crystallin with truncated sequence extensions.

B V Norledge 1, S Trinkl 1, R Jaenicke 1, C Slingsby 1
PMCID: PMC2143762  PMID: 9260274

Abstract

beta-Crystallins are oligomeric eye lens proteins that are related to monomeric gamma-crystallins by domain swapping: like gamma-crystallins, they are comprised of two similar domains but they differ in having long sequence extensions. beta B2, a major component of beta-crystallin oligomers, self-associates to a homodimer in solution. In two crystal structures of native beta B2, the protein is a 222-symmetric tetramer of eight domains. It has previously been shown that a mutant of rat beta B2-crystallin, in which the bulk of the N- and C-terminal sequence extensions has been deleted, assembles into dimers and tetramers. Here we present the 3.0 A resolution X-ray structure of the tetramer, beta B2 delta NC1. The mutant tetramer has a very similar set of domain interactions to the native structure. However, the structures differ in the relative orientation of the two sets of four domains. The paired N- and C-terminal domain interface, which is at the heart of the dimer structure, is very similar to the native structure. However, the truncation of the C-terminal extension removes an important tryptophan residue, which prevents the extension from acting as a (non-covalent) linker, as it does in native beta B2. There is a knock-on structural effect that removes a contact between extension and covalent linker, and this appears to cause a small twist in the linker that is amplified into a 20 degrees rotation between sets of paired domains.

Full Text

The Full Text of this article is available as a PDF (5.5 MB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bax B., Lapatto R., Nalini V., Driessen H., Lindley P. F., Mahadevan D., Blundell T. L., Slingsby C. X-ray analysis of beta B2-crystallin and evolution of oligomeric lens proteins. Nature. 1990 Oct 25;347(6295):776–780. doi: 10.1038/347776a0. [DOI] [PubMed] [Google Scholar]
  2. Bax B., Slingsby C. Crystallization of a new form of the eye lens protein beta B2-crystallin. J Mol Biol. 1989 Aug 20;208(4):715–717. doi: 10.1016/0022-2836(89)90162-9. [DOI] [PubMed] [Google Scholar]
  3. Bennett M. J., Schlunegger M. P., Eisenberg D. 3D domain swapping: a mechanism for oligomer assembly. Protein Sci. 1995 Dec;4(12):2455–2468. doi: 10.1002/pro.5560041202. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Blundell T., Lindley P., Miller L., Moss D., Slingsby C., Tickle I., Turnell B., Wistow G. The molecular structure and stability of the eye lens: x-ray analysis of gamma-crystallin II. Nature. 1981 Feb 26;289(5800):771–777. doi: 10.1038/289771a0. [DOI] [PubMed] [Google Scholar]
  5. Brünger A. T., Kuriyan J., Karplus M. Crystallographic R factor refinement by molecular dynamics. Science. 1987 Jan 23;235(4787):458–460. doi: 10.1126/science.235.4787.458. [DOI] [PubMed] [Google Scholar]
  6. Carver J. A., Cooper P. G., Truscott R. J. 1H-NMR spectroscopy of beta B2-crystallin from bovine eye lens. Conformation of the N- and C-terminal extensions. Eur J Biochem. 1993 Apr 1;213(1):313–320. doi: 10.1111/j.1432-1033.1993.tb17764.x. [DOI] [PubMed] [Google Scholar]
  7. David L. L., Shearer T. R., Shih M. Sequence analysis of lens beta-crystallins suggests involvement of calpain in cataract formation. J Biol Chem. 1993 Jan 25;268(3):1937–1940. [PubMed] [Google Scholar]
  8. Fletterick R. J., Bazan J. F. When one and one are not two. Nat Struct Biol. 1995 Sep;2(9):721–723. doi: 10.1038/nsb0995-721. [DOI] [PubMed] [Google Scholar]
  9. Khazanovich N., Bateman K., Chernaia M., Michalak M., James M. Crystal structure of the yeast cell-cycle control protein, p13suc1, in a strand-exchanged dimer. Structure. 1996 Mar 15;4(3):299–309. doi: 10.1016/s0969-2126(96)00034-2. [DOI] [PubMed] [Google Scholar]
  10. Kroone R. C., Elliott G. S., Ferszt A., Slingsby C., Lubsen N. H., Schoenmakers J. G. The role of the sequence extensions in beta-crystallin assembly. Protein Eng. 1994 Nov;7(11):1395–1399. doi: 10.1093/protein/7.11.1395. [DOI] [PubMed] [Google Scholar]
  11. Lapatto R., Nalini V., Bax B., Driessen H., Lindley P. F., Blundell T. L., Slingsby C. High resolution structure of an oligomeric eye lens beta-crystallin. Loops, arches, linkers and interfaces in beta B2 dimer compared to a monomeric gamma-crystallin. J Mol Biol. 1991 Dec 20;222(4):1067–1083. doi: 10.1016/0022-2836(91)90594-v. [DOI] [PubMed] [Google Scholar]
  12. Lee B., Richards F. M. The interpretation of protein structures: estimation of static accessibility. J Mol Biol. 1971 Feb 14;55(3):379–400. doi: 10.1016/0022-2836(71)90324-x. [DOI] [PubMed] [Google Scholar]
  13. Matthews B. W. Solvent content of protein crystals. J Mol Biol. 1968 Apr 28;33(2):491–497. doi: 10.1016/0022-2836(68)90205-2. [DOI] [PubMed] [Google Scholar]
  14. Nalini V., Bax B., Driessen H., Moss D. S., Lindley P. F., Slingsby C. Close packing of an oligomeric eye lens beta-crystallin induces loss of symmetry and ordering of sequence extensions. J Mol Biol. 1994 Mar 4;236(4):1250–1258. doi: 10.1016/0022-2836(94)90025-6. [DOI] [PubMed] [Google Scholar]
  15. Norledge B. V., Mayr E. M., Glockshuber R., Bateman O. A., Slingsby C., Jaenicke R., Driessen H. P. The X-ray structures of two mutant crystallin domains shed light on the evolution of multi-domain proteins. Nat Struct Biol. 1996 Mar;3(3):267–274. doi: 10.1038/nsb0396-267. [DOI] [PubMed] [Google Scholar]
  16. Sharma Y., Rao C. M., Narasu M. L., Rao S. C., Somasundaram T., Gopalakrishna A., Balasubramanian D. Calcium ion binding to delta- and to beta-crystallins. The presence of the "EF-hand" motif in delta-crystallin that aids in calcium ion binding. J Biol Chem. 1989 Aug 5;264(22):12794–12799. [PubMed] [Google Scholar]
  17. Trinkl S., Glockshuber R., Jaenicke R. Dimerization of beta B2-crystallin: the role of the linker peptide and the N- and C-terminal extensions. Protein Sci. 1994 Sep;3(9):1392–1400. doi: 10.1002/pro.5560030905. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Tumminia S. J., Jonak G. J., Focht R. J., Cheng Y. S., Russell P. Cataractogenesis in transgenic mice containing the HIV-1 protease linked to the lens alpha A-crystallin promoter. J Biol Chem. 1996 Jan 5;271(1):425–431. doi: 10.1074/jbc.271.1.425. [DOI] [PubMed] [Google Scholar]
  19. von Scheidt W., Eng C. M., Fitzmaurice T. F., Erdmann E., Hübner G., Olsen E. G., Christomanou H., Kandolf R., Bishop D. F., Desnick R. J. An atypical variant of Fabry's disease with manifestations confined to the myocardium. N Engl J Med. 1991 Feb 7;324(6):395–399. doi: 10.1056/NEJM199102073240607. [DOI] [PubMed] [Google Scholar]

Articles from Protein Science : A Publication of the Protein Society are provided here courtesy of The Protein Society

RESOURCES