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Protein Science : A Publication of the Protein Society logoLink to Protein Science : A Publication of the Protein Society
. 1998 Oct;7(10):2143–2149. doi: 10.1002/pro.5560071011

Construction, expression, and characterization of a novel fully activated recombinant single-chain hepatitis C virus protease.

S S Taremi 1, B Beyer 1, M Maher 1, N Yao 1, W Prosise 1, P C Weber 1, B A Malcolm 1
PMCID: PMC2143829  PMID: 9792101

Abstract

Efficient proteolytic processing of essential junctions of the hepatitis C virus (HCV) polyprotein requires a heterodimeric complex of the NS3 bifunctional protease/helicase and the NS4A accessory protein. A single-chain recombinant form of the protease has been constructed in which NS4A residues 21-32 (GSVVIVGRIILS) were fused in frame to the amino terminus of the NS3 protease domain (residues 3-181) through a tetrapeptide linker. The single-chain recombinant protease has been overexpressed as a soluble protein in E. coli and purified to homogeneity by a combination of metal chelate and size-exclusion chromatography. The single-chain recombinant protease domain shows full proteolytic activity cleaving the NS5A-5B synthetic peptide substrate, DTEDVVCCSMSYTWTGK with a Km and k(cat) of 20.0 +/- 2.0 microM and 9.6 +/- 2.0 min(-1), respectively; parameters identical to those of the authentic NS3(1-631)/NS4A(1-54) protein complex generated in eukaryotic cells (Sali DL et al., 1998, Biochemistry 37:3392-3401).

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Selected References

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  1. Alter M. J., Mast E. E. The epidemiology of viral hepatitis in the United States. Gastroenterol Clin North Am. 1994 Sep;23(3):437–455. [PubMed] [Google Scholar]
  2. Butkiewicz N. J., Wendel M., Zhang R., Jubin R., Pichardo J., Smith E. B., Hart A. M., Ingram R., Durkin J., Mui P. W. Enhancement of hepatitis C virus NS3 proteinase activity by association with NS4A-specific synthetic peptides: identification of sequence and critical residues of NS4A for the cofactor activity. Virology. 1996 Nov 15;225(2):328–338. doi: 10.1006/viro.1996.0607. [DOI] [PubMed] [Google Scholar]
  3. D'Souza E. D., O'Sullivan E., Amphlett E. M., Rowlands D. J., Sangar D. V., Clarke B. E. Analysis of NS3-mediated processing of the hepatitis C virus non-structural region in vitro. J Gen Virol. 1994 Dec;75(Pt 12):3469–3476. doi: 10.1099/0022-1317-75-12-3469. [DOI] [PubMed] [Google Scholar]
  4. Failla C., Tomei L., De Francesco R. Both NS3 and NS4A are required for proteolytic processing of hepatitis C virus nonstructural proteins. J Virol. 1994 Jun;68(6):3753–3760. doi: 10.1128/jvi.68.6.3753-3760.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Grakoui A., McCourt D. W., Wychowski C., Feinstone S. M., Rice C. M. Characterization of the hepatitis C virus-encoded serine proteinase: determination of proteinase-dependent polyprotein cleavage sites. J Virol. 1993 May;67(5):2832–2843. doi: 10.1128/jvi.67.5.2832-2843.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Hahm B., Han D. S., Back S. H., Song O. K., Cho M. J., Kim C. J., Shimotohno K., Jang S. K. NS3-4A of hepatitis C virus is a chymotrypsin-like protease. J Virol. 1995 Apr;69(4):2534–2539. doi: 10.1128/jvi.69.4.2534-2539.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Hirowatari Y., Hijikata M., Tanji Y., Nyunoya H., Mizushima H., Kimura K., Tanaka T., Kato N., Shimotohno K. Two proteinase activities in HCV polypeptide expressed in insect cells using baculovirus vector. Arch Virol. 1993;133(3-4):349–356. doi: 10.1007/BF01313774. [DOI] [PubMed] [Google Scholar]
  8. Kim J. L., Morgenstern K. A., Lin C., Fox T., Dwyer M. D., Landro J. A., Chambers S. P., Markland W., Lepre C. A., O'Malley E. T. Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide. Cell. 1996 Oct 18;87(2):343–355. doi: 10.1016/s0092-8674(00)81351-3. [DOI] [PubMed] [Google Scholar]
  9. Lin C., Prágai B. M., Grakoui A., Xu J., Rice C. M. Hepatitis C virus NS3 serine proteinase: trans-cleavage requirements and processing kinetics. J Virol. 1994 Dec;68(12):8147–8157. doi: 10.1128/jvi.68.12.8147-8157.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Lohmann V., Koch J. O., Bartenschlager R. Processing pathways of the hepatitis C virus proteins. J Hepatol. 1996;24(2 Suppl):11–19. [PubMed] [Google Scholar]
  11. Love R. A., Parge H. E., Wickersham J. A., Hostomsky Z., Habuka N., Moomaw E. W., Adachi T., Hostomska Z. The crystal structure of hepatitis C virus NS3 proteinase reveals a trypsin-like fold and a structural zinc binding site. Cell. 1996 Oct 18;87(2):331–342. doi: 10.1016/s0092-8674(00)81350-1. [DOI] [PubMed] [Google Scholar]
  12. Morgenstern K. A., Landro J. A., Hsiao K., Lin C., Gu Y., Su M. S., Thomson J. A. Polynucleotide modulation of the protease, nucleoside triphosphatase, and helicase activities of a hepatitis C virus NS3-NS4A complex isolated from transfected COS cells. J Virol. 1997 May;71(5):3767–3775. doi: 10.1128/jvi.71.5.3767-3775.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Neddermann P., Tomei L., Steinkühler C., Gallinari P., Tramontano A., De Francesco R. The nonstructural proteins of the hepatitis C virus: structure and functions. Biol Chem. 1997 Jun;378(6):469–476. [PubMed] [Google Scholar]
  14. Overton H., McMillan D., Gillespie F., Mills J. Recombinant baculovirus-expressed NS3 proteinase of hepatitis C virus shows activity in cell-based and in vitro assays. J Gen Virol. 1995 Dec;76(Pt 12):3009–3019. doi: 10.1099/0022-1317-76-12-3009. [DOI] [PubMed] [Google Scholar]
  15. Sali D. L., Ingram R., Wendel M., Gupta D., McNemar C., Tsarbopoulos A., Chen J. W., Hong Z., Chase R., Risano C. Serine protease of hepatitis C virus expressed in insect cells as the NS3/4A complex. Biochemistry. 1998 Mar 10;37(10):3392–3401. doi: 10.1021/bi972010r. [DOI] [PubMed] [Google Scholar]
  16. Sharara A. I. Chronic hepatitis C. South Med J. 1997 Sep;90(9):872–877. doi: 10.1097/00007611-199709000-00002. [DOI] [PubMed] [Google Scholar]
  17. Shoji I., Suzuki T., Chieda S., Sato M., Harada T., Chiba T., Matsuura Y., Miyamura T. Proteolytic activity of NS3 serine proteinase of hepatitis C virus efficiently expressed in Escherichia coli. Hepatology. 1995 Dec;22(6):1648–1655. [PubMed] [Google Scholar]
  18. Simmonds P. Virology of hepatitis C virus. Clin Ther. 1996;18 (Suppl B):9–36. doi: 10.1016/S0149-2918(96)80193-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Stadhouders P. H., Cooreman M. P. Chronic hepatitis C virus disease: an evaluation of procedures for diagnosis and treatment. Neth J Med. 1997 Dec;51(6):213–224. doi: 10.1016/s0300-2977(97)00045-4. [DOI] [PubMed] [Google Scholar]
  20. Steinkühler C., Tomei L., De Francesco R. In vitro activity of hepatitis C virus protease NS3 purified from recombinant Baculovirus-infected Sf9 cells. J Biol Chem. 1996 Mar 15;271(11):6367–6373. doi: 10.1074/jbc.271.11.6367. [DOI] [PubMed] [Google Scholar]
  21. Suzuki T., Sato M., Chieda S., Shoji I., Harada T., Yamakawa Y., Watabe S., Matsuura Y., Miyamura T. In vivo and in vitro trans-cleavage activity of hepatitis C virus serine proteinase expressed by recombinant baculoviruses. J Gen Virol. 1995 Dec;76(Pt 12):3021–3029. doi: 10.1099/0022-1317-76-12-3021. [DOI] [PubMed] [Google Scholar]
  22. Takamizawa A., Mori C., Fuke I., Manabe S., Murakami S., Fujita J., Onishi E., Andoh T., Yoshida I., Okayama H. Structure and organization of the hepatitis C virus genome isolated from human carriers. J Virol. 1991 Mar;65(3):1105–1113. doi: 10.1128/jvi.65.3.1105-1113.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Tanji Y., Hijikata M., Satoh S., Kaneko T., Shimotohno K. Hepatitis C virus-encoded nonstructural protein NS4A has versatile functions in viral protein processing. J Virol. 1995 Mar;69(3):1575–1581. doi: 10.1128/jvi.69.3.1575-1581.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Tomei L., Failla C., Santolini E., De Francesco R., La Monica N. NS3 is a serine protease required for processing of hepatitis C virus polyprotein. J Virol. 1993 Jul;67(7):4017–4026. doi: 10.1128/jvi.67.7.4017-4026.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Tomei L., Failla C., Vitale R. L., Bianchi E., De Francesco R. A central hydrophobic domain of the hepatitis C virus NS4A protein is necessary and sufficient for the activation of the NS3 protease. J Gen Virol. 1996 May;77(Pt 5):1065–1070. doi: 10.1099/0022-1317-77-5-1065. [DOI] [PubMed] [Google Scholar]
  26. Vishnuvardhan D., Kakiuchi N., Urvil P. T., Shimotohno K., Kumar P. K., Nishikawa S. Expression of highly active recombinant NS3 protease domain of hepatitis C virus in E. coli. FEBS Lett. 1997 Feb 3;402(2-3):209–212. doi: 10.1016/s0014-5793(96)01532-3. [DOI] [PubMed] [Google Scholar]
  27. Yan Y., Li Y., Munshi S., Sardana V., Cole J. L., Sardana M., Steinkuehler C., Tomei L., De Francesco R., Kuo L. C. Complex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: a 2.2 A resolution structure in a hexagonal crystal form. Protein Sci. 1998 Apr;7(4):837–847. doi: 10.1002/pro.5560070402. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Zhang R., Durkin J., Windsor W. T., McNemar C., Ramanathan L., Le H. V. Probing the substrate specificity of hepatitis C virus NS3 serine protease by using synthetic peptides. J Virol. 1997 Aug;71(8):6208–6213. doi: 10.1128/jvi.71.8.6208-6213.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]

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