Abstract
The betabellin target structure is a beta-sandwich protein consisting of two 32 residue beta-sheets packed against one another by interaction of their hydrophobic faces. The 32 residue chain of betabellin-15S (HSLTAKIpkLTFSIAphTYTCAV pkYTAKVSH, where p=DPro, k=DLys, and h=DHis) did not fold in water at pH 6.5. Air oxidation of betabellin-15S provided betabellin-15D, the 64 residue disulfide bridged two-chain molecule, which also remained unfolded in water at pH 6.5. By circular dichroic spectropolarimetry, the extent of beta structure observed for betabellin-15D increased with the pH and ionic strength of the solution and the betabellin-15D concentration. By electron microscopy, in 5.0 mM MOPS and 0.25 M NaCl at pH 6.9, betabellin-15D formed long narrow multimeric fibrils. A molecular model was constructed to show that the dimensions of these betabellin-15D fibrils are consistent with a single row of beta-sandwich molecules joined by multiple intersheet H-bonds.
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- Betz S. F., DeGrado W. F. Controlling topology and native-like behavior of de novo-designed peptides: design and characterization of antiparallel four-stranded coiled coils. Biochemistry. 1996 May 28;35(21):6955–6962. doi: 10.1021/bi960095a. [DOI] [PubMed] [Google Scholar]
- Betz S. F., Liebman P. A., DeGrado W. F. De novo design of native proteins: characterization of proteins intended to fold into antiparallel, rop-like, four-helix bundles. Biochemistry. 1997 Mar 4;36(9):2450–2458. doi: 10.1021/bi961704h. [DOI] [PubMed] [Google Scholar]
- Betz SF, Raleigh DP, DeGrado WF, Lovejoy B, Anderson D, Ogihara N, Eisenberg D. Crystallization of a designed peptide from a molten globule ensemble. Fold Des. 1995;1(1):57–64. [PubMed] [Google Scholar]
- Bryson J. W., Betz S. F., Lu H. S., Suich D. J., Zhou H. X., O'Neil K. T., DeGrado W. F. Protein design: a hierarchic approach. Science. 1995 Nov 10;270(5238):935–941. doi: 10.1126/science.270.5238.935. [DOI] [PubMed] [Google Scholar]
- Chothia C., Janin J. Relative orientation of close-packed beta-pleated sheets in proteins. Proc Natl Acad Sci U S A. 1981 Jul;78(7):4146–4150. doi: 10.1073/pnas.78.7.4146. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cohen F. E., Sternberg M. J., Taylor W. R. Analysis of the tertiary structure of protein beta-sheet sandwiches. J Mol Biol. 1981 May 25;148(3):253–272. doi: 10.1016/0022-2836(81)90538-6. [DOI] [PubMed] [Google Scholar]
- Dahiyat B. I., Mayo S. L. De novo protein design: fully automated sequence selection. Science. 1997 Oct 3;278(5335):82–87. doi: 10.1126/science.278.5335.82. [DOI] [PubMed] [Google Scholar]
- Engel M., Williams R. W., Erickson B. W. Designed coiled-coil proteins: synthesis and spectroscopy of two 78-residue alpha-helical dimers. Biochemistry. 1991 Apr 2;30(13):3161–3169. doi: 10.1021/bi00227a002. [DOI] [PubMed] [Google Scholar]
- Handel T. M., Williams S. A., DeGrado W. F. Metal ion-dependent modulation of the dynamics of a designed protein. Science. 1993 Aug 13;261(5123):879–885. doi: 10.1126/science.8346440. [DOI] [PubMed] [Google Scholar]
- Hecht M. H. De novo design of beta-sheet proteins. Proc Natl Acad Sci U S A. 1994 Sep 13;91(19):8729–8730. doi: 10.1073/pnas.91.19.8729. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hecht M. H., Richardson J. S., Richardson D. C., Ogden R. C. De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence. Science. 1990 Aug 24;249(4971):884–891. doi: 10.1126/science.2392678. [DOI] [PubMed] [Google Scholar]
- Hodges R. S. Boehringer Mannheim award lecture 1995. La conference Boehringer Mannheim 1995. De novo design of alpha-helical proteins: basic research to medical applications. Biochem Cell Biol. 1996;74(2):133–154. doi: 10.1139/o96-015. [DOI] [PubMed] [Google Scholar]
- Hodges R. S., Semchuk P. D., Taneja A. K., Kay C. M., Parker J. M., Mant C. T. Protein design using model synthetic peptides. Pept Res. 1988 Sep-Oct;1(1):19–30. [PubMed] [Google Scholar]
- Kohn W. D., Kay C. M., Hodges R. S. Salt effects on protein stability: two-stranded alpha-helical coiled-coils containing inter- or intrahelical ion pairs. J Mol Biol. 1997 Apr 11;267(4):1039–1052. doi: 10.1006/jmbi.1997.0930. [DOI] [PubMed] [Google Scholar]
- Krause E., Beyermann M., Fabian H., Dathe M., Rothemund S., Bienert M. Conformation of a water-soluble beta-sheet model peptide. A circular dichroism and Fourier-transform infrared spectroscopic study of double D-amino acid replacements. Int J Pept Protein Res. 1996 Dec;48(6):559–568. doi: 10.1111/j.1399-3011.1996.tb00875.x. [DOI] [PubMed] [Google Scholar]
- Kullmann W. Design, synthesis, and binding characteristics of an opiate receptor mimetic peptide. J Med Chem. 1984 Feb;27(2):106–115. doi: 10.1021/jm00368a002. [DOI] [PubMed] [Google Scholar]
- Lombardi A., Bryson J. W., DeGrado W. F. De novo design of heterotrimeric coiled coils. Biopolymers. 1996;40(5):495–504. doi: 10.1002/(SICI)1097-0282(1996)40:5%3C495::AID-BIP7%3E3.0.CO;2-R. [DOI] [PubMed] [Google Scholar]
- Mayo K. H., Ilyina E., Park H. A recipe for designing water-soluble, beta-sheet-forming peptides. Protein Sci. 1996 Jul;5(7):1301–1315. doi: 10.1002/pro.5560050709. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nesloney C. L., Kelly J. W. Progress towards understanding beta-sheet structure. Bioorg Med Chem. 1996 Jun;4(6):739–766. doi: 10.1016/0968-0896(96)00051-x. [DOI] [PubMed] [Google Scholar]
- Pessi A., Bianchi E., Crameri A., Venturini S., Tramontano A., Sollazzo M. A designed metal-binding protein with a novel fold. Nature. 1993 Mar 25;362(6418):367–369. doi: 10.1038/362367a0. [DOI] [PubMed] [Google Scholar]
- Ponder J. W., Richards F. M. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J Mol Biol. 1987 Feb 20;193(4):775–791. doi: 10.1016/0022-2836(87)90358-5. [DOI] [PubMed] [Google Scholar]
- Quinn T. P., Tweedy N. B., Williams R. W., Richardson J. S., Richardson D. C. Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein. Proc Natl Acad Sci U S A. 1994 Sep 13;91(19):8747–8751. doi: 10.1073/pnas.91.19.8747. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Richardson J. S., Richardson D. C., Tweedy N. B., Gernert K. M., Quinn T. P., Hecht M. H., Erickson B. W., Yan Y., McClain R. D., Donlan M. E. Looking at proteins: representations, folding, packing, and design. Biophysical Society National Lecture, 1992. Biophys J. 1992 Nov;63(5):1185–1209. [PMC free article] [PubMed] [Google Scholar]
- Salemme F. R. Structural properties of protein beta-sheets. Prog Biophys Mol Biol. 1983;42(2-3):95–133. doi: 10.1016/0079-6107(83)90005-6. [DOI] [PubMed] [Google Scholar]
- Wagner D. S., Melton L. G., Yan Y., Erickson B. W., Anderegg R. J. Deuterium exchange of alpha-helices and beta-sheets as monitored by electrospray ionization mass spectrometry. Protein Sci. 1994 Aug;3(8):1305–1314. doi: 10.1002/pro.5560030817. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Woody R. W. Circular dichroism. Methods Enzymol. 1995;246:34–71. doi: 10.1016/0076-6879(95)46006-3. [DOI] [PubMed] [Google Scholar]
- Yan Y., Erickson B. W. Engineering of betabellin 14D: disulfide-induced folding of a beta-sheet protein. Protein Sci. 1994 Jul;3(7):1069–1073. doi: 10.1002/pro.5560030709. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yan Y., Tropsha A., Hermans J., Erickson B. W. Free energies for refolding of the common beta turn into the inverse-common beta turn: simulation of the role of D/L chirality. Proc Natl Acad Sci U S A. 1993 Aug 15;90(16):7898–7902. doi: 10.1073/pnas.90.16.7898. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zappacosta F., Ingallinella P., Scaloni A., Pessi A., Bianchi E., Sollazzo M., Tramontano A., Marino G., Pucci P. Surface topology of Minibody by selective chemical modifications and mass spectrometry. Protein Sci. 1997 Sep;6(9):1901–1909. doi: 10.1002/pro.5560060911. [DOI] [PMC free article] [PubMed] [Google Scholar]