Abstract
Using heteronuclear NMR spectroscopy, we studied the solution structure and dynamics of bovine beta-lactoglobulin A at pH 2.0 and 45 degrees C, where the protein exists as a monomeric native state. The monomeric NMR structure, comprising an eight-stranded continuous antiparallel beta-barrel and one major alpha-helix, is similar to the X-ray dimeric structure obtained at pH 6.2, including betaI-strand that forms the dimer interface and loop EF that serves as a lid of the interior hydrophobic hole. [1H]-15N NOE revealed that betaF, betaG, and betaH strands buried under the major alpha-helix are rigid on a pico- to nanosecond time scale and also emphasized rapid fluctuations of loops and the N- and C-terminal regions.
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- Booth D. R., Sunde M., Bellotti V., Robinson C. V., Hutchinson W. L., Fraser P. E., Hawkins P. N., Dobson C. M., Radford S. E., Blake C. C. Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis. Nature. 1997 Feb 27;385(6619):787–793. doi: 10.1038/385787a0. [DOI] [PubMed] [Google Scholar]
- Brownlow S., Morais Cabral J. H., Cooper R., Flower D. R., Yewdall S. J., Polikarpov I., North A. C., Sawyer L. Bovine beta-lactoglobulin at 1.8 A resolution--still an enigmatic lipocalin. Structure. 1997 Apr 15;5(4):481–495. doi: 10.1016/s0969-2126(97)00205-0. [DOI] [PubMed] [Google Scholar]
- Cho Y., Gu W., Watkins S., Lee S. P., Kim T. R., Brady J. W., Batt C. A. Thermostable variants of bovine beta-lactoglobulin. Protein Eng. 1994 Feb;7(2):263–270. doi: 10.1093/protein/7.2.263. [DOI] [PubMed] [Google Scholar]
- Dalal S., Balasubramanian S., Regan L. Transmuting alpha helices and beta sheets. Fold Des. 1997;2(5):R71–R79. doi: 10.1016/s1359-0278(97)00036-9. [DOI] [PubMed] [Google Scholar]
- Farrow N. A., Muhandiram R., Singer A. U., Pascal S. M., Kay C. M., Gish G., Shoelson S. E., Pawson T., Forman-Kay J. D., Kay L. E. Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation. Biochemistry. 1994 May 17;33(19):5984–6003. doi: 10.1021/bi00185a040. [DOI] [PubMed] [Google Scholar]
- Fogolari F., Ragona L., Zetta L., Romagnoli S., De Kruif K. G., Molinari H. Monomeric bovine beta-lactoglobulin adopts a beta-barrel fold at pH 2. FEBS Lett. 1998 Oct 2;436(2):149–154. doi: 10.1016/s0014-5793(98)00936-3. [DOI] [PubMed] [Google Scholar]
- Fugate R. D., Song P. S. Spectroscopic characterization of beta-lactoglobulin-retinol complex. Biochim Biophys Acta. 1980 Sep 23;625(1):28–42. doi: 10.1016/0005-2795(80)90105-1. [DOI] [PubMed] [Google Scholar]
- Güntert P., Mumenthaler C., Wüthrich K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol. 1997 Oct 17;273(1):283–298. doi: 10.1006/jmbi.1997.1284. [DOI] [PubMed] [Google Scholar]
- Hamada D., Goto Y. The equilibrium intermediate of beta-lactoglobulin with non-native alpha-helical structure. J Mol Biol. 1997 Jun 20;269(4):479–487. doi: 10.1006/jmbi.1997.1055. [DOI] [PubMed] [Google Scholar]
- Hamada D., Kuroda Y., Tanaka T., Goto Y. High helical propensity of the peptide fragments derived from beta-lactoglobulin, a predominantly beta-sheet protein. J Mol Biol. 1995 Dec 8;254(4):737–746. doi: 10.1006/jmbi.1995.0651. [DOI] [PubMed] [Google Scholar]
- Hamada D., Segawa S., Goto Y. Non-native alpha-helical intermediate in the refolding of beta-lactoglobulin, a predominantly beta-sheet protein. Nat Struct Biol. 1996 Oct;3(10):868–873. doi: 10.1038/nsb1096-868. [DOI] [PubMed] [Google Scholar]
- Jackson G. S., Hosszu L. L., Power A., Hill A. F., Kenney J., Saibil H., Craven C. J., Waltho J. P., Clarke A. R., Collinge J. Reversible conversion of monomeric human prion protein between native and fibrilogenic conformations. Science. 1999 Mar 19;283(5409):1935–1937. doi: 10.1126/science.283.5409.1935. [DOI] [PubMed] [Google Scholar]
- Kim T. R., Goto Y., Hirota N., Kuwata K., Denton H., Wu S. Y., Sawyer L., Batt C. A. High-level expression of bovine beta-lactoglobulin in Pichia pastoris and characterization of its physical properties. Protein Eng. 1997 Nov;10(11):1339–1345. doi: 10.1093/protein/10.11.1339. [DOI] [PubMed] [Google Scholar]
- Koradi R., Billeter M., Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph. 1996 Feb;14(1):51-5, 29-32. doi: 10.1016/0263-7855(96)00009-4. [DOI] [PubMed] [Google Scholar]
- Kuwata K., Hoshino M., Era S., Batt C. A., Goto Y. alpha-->beta transition of beta-lactoglobulin as evidenced by heteronuclear NMR. J Mol Biol. 1998 Nov 6;283(4):731–739. doi: 10.1006/jmbi.1998.2117. [DOI] [PubMed] [Google Scholar]
- Kyte J., Doolittle R. F. A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982 May 5;157(1):105–132. doi: 10.1016/0022-2836(82)90515-0. [DOI] [PubMed] [Google Scholar]
- Marion D., Driscoll P. C., Kay L. E., Wingfield P. T., Bax A., Gronenborn A. M., Clore G. M. Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta. Biochemistry. 1989 Jul 25;28(15):6150–6156. doi: 10.1021/bi00441a004. [DOI] [PubMed] [Google Scholar]
- Mottonen J., Strand A., Symersky J., Sweet R. M., Danley D. E., Geoghegan K. F., Gerard R. D., Goldsmith E. J. Structural basis of latency in plasminogen activator inhibitor-1. Nature. 1992 Jan 16;355(6357):270–273. doi: 10.1038/355270a0. [DOI] [PubMed] [Google Scholar]
- Nilges M., Clore G. M., Gronenborn A. M. Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations. FEBS Lett. 1988 Mar 14;229(2):317–324. doi: 10.1016/0014-5793(88)81148-7. [DOI] [PubMed] [Google Scholar]
- Prusiner S. B. Prion diseases and the BSE crisis. Science. 1997 Oct 10;278(5336):245–251. doi: 10.1126/science.278.5336.245. [DOI] [PubMed] [Google Scholar]
- Qin B. Y., Bewley M. C., Creamer L. K., Baker H. M., Baker E. N., Jameson G. B. Structural basis of the Tanford transition of bovine beta-lactoglobulin. Biochemistry. 1998 Oct 6;37(40):14014–14023. doi: 10.1021/bi981016t. [DOI] [PubMed] [Google Scholar]
- Qin B. Y., Creamer L. K., Baker E. N., Jameson G. B. 12-Bromododecanoic acid binds inside the calyx of bovine beta-lactoglobulin. FEBS Lett. 1998 Nov 6;438(3):272–278. doi: 10.1016/s0014-5793(98)01199-5. [DOI] [PubMed] [Google Scholar]
- Ragona L., Pusterla F., Zetta L., Monaco H. L., Molinari H. Identification of a conserved hydrophobic cluster in partially folded bovine beta-lactoglobulin at pH 2. Fold Des. 1997;2(5):281–290. doi: 10.1016/s1359-0278(97)00039-4. [DOI] [PubMed] [Google Scholar]
- Shiraki K., Nishikawa K., Goto Y. Trifluoroethanol-induced stabilization of the alpha-helical structure of beta-lactoglobulin: implication for non-hierarchical protein folding. J Mol Biol. 1995 Jan 13;245(2):180–194. doi: 10.1006/jmbi.1994.0015. [DOI] [PubMed] [Google Scholar]
- Uhrínová S., Uhrín D., Denton H., Smith M., Sawyer L., Barlow P. N. Complete assignment of 1H, 13C and 15N chemical shifts for bovine beta-lactoglobulin: secondary structure and topology of the native state is retained in a partially unfolded form. J Biomol NMR. 1998 Jul;12(1):89–107. doi: 10.1023/a:1008268528695. [DOI] [PubMed] [Google Scholar]