Abstract
Nanoflow electrospray mass spectrometry was used to monitor the formation of protein heterodimers of HU proteins from Bacillus stearothermophilus and Bacillus subtilis. This has enabled us to analyze both thermodynamic and kinetic features associated with the dissociation of homodimeric HU proteins. The results obtained correlate well with the kinetics of the protein dissociation process and the free energy difference between homo- and heterodimeric species anticipated from other studies. We suggest that this approach will have general applicability in studying protein association and dissociation under near-equilibrium conditions and will be relevant to a wide range of biological systems.
Full Text
The Full Text of this article is available as a PDF (115.1 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Drlica K., Rouviere-Yaniv J. Histonelike proteins of bacteria. Microbiol Rev. 1987 Sep;51(3):301–319. doi: 10.1128/mr.51.3.301-319.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Groch N., Schindelin H., Scholtz A. S., Hahn U., Heinemann U. Determination of DNA-binding parameters for the Bacillus subtilis histone-like HBsu protein through introduction of fluorophores by site-directed mutagenesis of a synthetic gene. Eur J Biochem. 1992 Jul 15;207(2):677–685. doi: 10.1111/j.1432-1033.1992.tb17095.x. [DOI] [PubMed] [Google Scholar]
- Kawamura S., Kakuta Y., Tanaka I., Hikichi K., Kuhara S., Yamasaki N., Kimura M. Glycine-15 in the bend between two alpha-helices can explain the thermostability of DNA binding protein HU from Bacillus stearothermophilus. Biochemistry. 1996 Jan 30;35(4):1195–1200. doi: 10.1021/bi951581l. [DOI] [PubMed] [Google Scholar]
- Nettleton E. J., Sunde M., Lai Z., Kelly J. W., Dobson C. M., Robinson C. V. Protein subunit interactions and structural integrity of amyloidogenic transthyretins: evidence from electrospray mass spectrometry. J Mol Biol. 1998 Aug 21;281(3):553–564. doi: 10.1006/jmbi.1998.1937. [DOI] [PubMed] [Google Scholar]
- Padas P. M., Wilson K. S., Vorgias C. E. The DNA-binding protein HU from mesophilic and thermophilic bacilli: gene cloning, overproduction and purification. Gene. 1992 Aug 1;117(1):39–44. doi: 10.1016/0378-1119(92)90487-a. [DOI] [PubMed] [Google Scholar]
- Rice P. A. Making DNA do a U-turn: IHF and related proteins. Curr Opin Struct Biol. 1997 Feb;7(1):86–93. doi: 10.1016/s0959-440x(97)80011-5. [DOI] [PubMed] [Google Scholar]
- Vis H., Mariani M., Vorgias C. E., Wilson K. S., Kaptein R., Boelens R. Solution structure of the HU protein from Bacillus stearothermophilus. J Mol Biol. 1995 Dec 8;254(4):692–703. doi: 10.1006/jmbi.1995.0648. [DOI] [PubMed] [Google Scholar]
- Welfle H., Misselwitz R., Welfle K., Groch N., Heinemann U. Salt-dependent and protein-concentration-dependent changes in the solution structure of the DNA-binding histone-like protein, HBsu, from Bacillus subtilis. Eur J Biochem. 1992 Mar 15;204(3):1049–1055. doi: 10.1111/j.1432-1033.1992.tb16727.x. [DOI] [PubMed] [Google Scholar]
- Welfle H., Welfle K., Misselwitz R., Groch N., Heinemann U. Conformational stability of the DNA-binding histone-like protein, HBsu, from Bacillus subtilis, and of the four HBsu variants [F29W], [F47W], [F50W] and [F79W]. J Biomol Struct Dyn. 1993 Oct;11(2):381–394. doi: 10.1080/07391102.1993.10508733. [DOI] [PubMed] [Google Scholar]
- White S. W., Appelt K., Wilson K. S., Tanaka I. A protein structural motif that bends DNA. Proteins. 1989;5(4):281–288. doi: 10.1002/prot.340050405. [DOI] [PubMed] [Google Scholar]
- Wilson K. S., Vorgias C. E., Tanaka I., White S. W., Kimura M. The thermostability of DNA-binding protein HU from bacilli. Protein Eng. 1990 Oct;4(1):11–22. doi: 10.1093/protein/4.1.11. [DOI] [PubMed] [Google Scholar]
