Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1979 May;138(2):486–491. doi: 10.1128/jb.138.2.486-491.1979

Ionizing Radiation Damage to the Folded Chromosome of Escherichia coli K-12: Repair of Double-Strand Breaks in Deoxyribonucleic Acid

Kevin M Ulmer 2,, Reinaldo F Gomez 1, Anthony J Sinskey 1
PMCID: PMC218202  PMID: 374389

Abstract

The extremely gentle lysis and unfolding procedures that have been developed for the isolation of nucleoid deoxyribonucleic acid (DNA; K. M. Ulmer et al., J. Bacteriol. 138:475–485, 1979) yield undamaged, replicating genomes, thus permitting direct measurement of the formation and repair of DNA double-strand breaks at biologically significant doses of ionizing radiation. Repair of ionizing radiation damage to folded chromosomes of Escherichia coli K-12 strain AB2497 was observed within 2 to 3 h of post-irradiation incubation in growth medium. Such behavior was not observed after post-irradiation incubation in growth medium of a recA13 strain (strain AB2487). A model based on recombinational repair is proposed to explain the formation of 2,200 to 2,300S material during early stages of incubation and to explain subsequent changes in the gradient profiles. Association of unrepaired DNA with the plasma membrane is proposed to explain the formation of a peak of rapidly sedimenting material (greater than 3,100S) during the later stages of repair. Direct evidence of repair of double-strand breaks during post-irradiation incubation in growth medium was obtained from gradient profiles of DNA from ribonuclease-digested chromosomes. The sedimentation coefficient of broken molecules was restored to the value of unirradiated DNA after 2 to 3 h of incubation, and the fraction of the DNA repaired in this fashion was equal to the fraction of cells that survived at the same dose. An average of 2.7 double-strand breaks per genome per lethal event was observed, suggesting that one to two double-strand breaks per genome are repairable in E. coli K-12 strain AB2497.

Full text

PDF
486

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bonura T., Smith K. C. Letter: The involvement of indirect effects in cell-killing and DNA double-strand breakage in gamma-irradiated Escherichia coli K-12. Int J Radiat Biol Relat Stud Phys Chem Med. 1976 Mar;29(3):293–296. doi: 10.1080/09553007614550331. [DOI] [PubMed] [Google Scholar]
  2. Bonura T., Town C. D., Smith K. C., Kaplan H. S. The influence of oxygen on the yield of DNA double-strand breaks in x-irradiated Escherichia coli K-12. Radiat Res. 1975 Sep;63(3):567–577. [PubMed] [Google Scholar]
  3. Burrell A. D., Dean C. J. Repair of double-strand breaks in Micrococcus radiodurans. Basic Life Sci. 1975;5B:507–512. doi: 10.1007/978-1-4684-2898-8_13. [DOI] [PubMed] [Google Scholar]
  4. Burrell A. D., Feldschreiber P., Dean C. J. DNA-membrane association and the repair of double breaks in x-irradiated Micrococcus radiodurans. Biochim Biophys Acta. 1971 Sep 30;247(1):38–53. doi: 10.1016/0005-2787(71)90805-7. [DOI] [PubMed] [Google Scholar]
  5. Davies R., Sinskey A. J., Botstein D. Deoxyribonucleic acid repair in a highly radiation-resistant strain of Salmonella typhimurium. J Bacteriol. 1973 Apr;114(1):357–366. doi: 10.1128/jb.114.1.357-366.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Davies R., Sinskey A. J. Radiation-resistant mutants of Salmonella typhimurium LT2: development and characterization. J Bacteriol. 1973 Jan;113(1):133–144. doi: 10.1128/jb.113.1.133-144.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Kaplan H. S. DNA-strand scission and loss of viability after x irradiation of normal and sensitized bacterial cells. Proc Natl Acad Sci U S A. 1966 Jun;55(6):1442–1446. doi: 10.1073/pnas.55.6.1442. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Kitayama S., Matsuyama A. Possibility of the repair of double-strand scissions in Micrococcus radiodurans DNA caused by gamma-rays. Biochem Biophys Res Commun. 1968 Nov 8;33(3):418–422. doi: 10.1016/0006-291x(68)90588-3. [DOI] [PubMed] [Google Scholar]
  9. Korch C., Ovrebo S., Kleppe K. Envelope-associated folded chromosomes for Escherichia coli: variations under different physiological conditions. J Bacteriol. 1976 Aug;127(2):904–916. doi: 10.1128/jb.127.2.904-916.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Krasin F., Hutchinson F. Repair of DNA double-strand breaks in Escherichia coli, which requires recA function and the presence of a duplicate genome. J Mol Biol. 1977 Oct 15;116(1):81–98. doi: 10.1016/0022-2836(77)90120-6. [DOI] [PubMed] [Google Scholar]
  11. Krisch R. E., Krasin F., Sauri C. J. DNA breakage, repair and lethality after 125I decay in rec+ and recA strains of Escherichia coli. Int J Radiat Biol Relat Stud Phys Chem Med. 1976 Jan;29(1):37–50. doi: 10.1080/09553007614551541. [DOI] [PubMed] [Google Scholar]
  12. Levin D., Hutchinson F. Neutral sucrose sedimentation of very large DNA from Bacillus subtilis. I. Effect of random double-strand breaks and centrifuge speed on sedimentation. J Mol Biol. 1973 Apr 15;75(3):455–478. doi: 10.1016/0022-2836(73)90454-3. [DOI] [PubMed] [Google Scholar]
  13. Lydersen B. K., Pettijohn D. E. Interactions stabilizing DNA tertiary structure in the Escherichia coli chromosome investigated with ionizing radiation. Chromosoma. 1977 Jul 8;62(3):199–215. doi: 10.1007/BF00286044. [DOI] [PubMed] [Google Scholar]
  14. Pettijohn D. E. Prokaryotic DNA in nucleoid structure. CRC Crit Rev Biochem. 1976 Nov;4(2):175–202. doi: 10.3109/10409237609105458. [DOI] [PubMed] [Google Scholar]
  15. Ulmer K. M., Gomez R. F., Sinskey A. J. Ionizing radiation damage to the folded chromosome of Escherichia coli K-12: sedimentation properties of irradiated nucleoids and chromosomal deoxyribonucleic acid. J Bacteriol. 1979 May;138(2):475–485. doi: 10.1128/jb.138.2.475-485.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Youngs D. A., Smith K. C. Single-strand breaks in the DNA of the uvrA and uvrB strains of Escherichia coli K-12 after ultraviolet irradiation. Photochem Photobiol. 1976 Dec;24(6):533–541. doi: 10.1111/j.1751-1097.1976.tb06870.x. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES