Abstract
To evaluate the potential for dimerization through a particular T cell receptor (TCR) domain, we have cloned the cDNA encoding a TCR V alpha from a hybridoma with specificity for the human immunodeficiency virus (HIV) envelope glycoprotein 120-derived peptide P18-110 (RGPGRAFVTI) bound to the murine major histocompatibility complex (MHC) class I molecule, H-2Dd. This cDNA was then expressed in a bacterial vector, and protein, as inclusion bodies, was solubilized, refolded, and purified to homogeneity. Yield of the refolded material was from 10 to 50 mg per liter of bacterial culture, the protein was soluble at concentrations as high as 25 mg/ml, and it retained a high level of reactivity with an anti-V alpha 2 monoclonal antibody. This domain was monomeric both by size exclusion gel chromatography and by sodium dodecyl sulfate polyacrylamide gel electrophoresis. Circular dichroism spectra indicated that the folded V alpha domain had secondary structure similar to that of single immunoglobulin or TCR domains, consisting largely of beta sheet. Conditions for crystallization were established, and at least two crystal geometries were observed: hexagonal bipyramids that failed to diffract beyond approximately 6 A, and orthorhombic crystals that diffracted to 2.5 A. The dimerization of the V alpha domain was investigated further by solution nuclear magnetic resonance spectroscopy, which indicated that dimeric and monomeric forms of the protein were about equally populated at a concentration of 1 mM. Thus, models of TCR-mediated T cell activation that invoke TCR dimerization must consider that some V alpha domains have little tendency to form homodimers or multimers.
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- Abastado J. P., Lone Y. C., Casrouge A., Boulot G., Kourilsky P. Dimerization of soluble major histocompatibility complex-peptide complexes is sufficient for activation of T cell hybridoma and induction of unresponsiveness. J Exp Med. 1995 Aug 1;182(2):439–447. doi: 10.1084/jem.182.2.439. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
- Anglister J., Grzesiek S., Ren H., Klee C. B., Bax A. Isotope-edited multidimensional NMR of calcineurin B in the presence of the non-deuterated detergent CHAPS. J Biomol NMR. 1993 Jan;3(1):121–126. doi: 10.1007/BF00242480. [DOI] [PubMed] [Google Scholar]
- Bentley G. A., Boulot G., Karjalainen K., Mariuzza R. A. Crystal structure of the beta chain of a T cell antigen receptor. Science. 1995 Mar 31;267(5206):1984–1987. doi: 10.1126/science.7701320. [DOI] [PubMed] [Google Scholar]
- Better M., Chang C. P., Robinson R. R., Horwitz A. H. Escherichia coli secretion of an active chimeric antibody fragment. Science. 1988 May 20;240(4855):1041–1043. doi: 10.1126/science.3285471. [DOI] [PubMed] [Google Scholar]
- Brown J. H., Jardetzky T. S., Gorga J. C., Stern L. J., Urban R. G., Strominger J. L., Wiley D. C. Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature. 1993 Jul 1;364(6432):33–39. doi: 10.1038/364033a0. [DOI] [PubMed] [Google Scholar]
- Buchner J., Rudolph R. Renaturation, purification and characterization of recombinant Fab-fragments produced in Escherichia coli. Biotechnology (N Y) 1991 Feb;9(2):157–162. doi: 10.1038/nbt0291-157. [DOI] [PubMed] [Google Scholar]
- Corr M., Boyd L. F., Frankel S. R., Kozlowski S., Padlan E. A., Margulies D. H. Endogenous peptides of a soluble major histocompatibility complex class I molecule, H-2Lds: sequence motif, quantitative binding, and molecular modeling of the complex. J Exp Med. 1992 Dec 1;176(6):1681–1692. doi: 10.1084/jem.176.6.1681. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Corr M., Boyd L. F., Padlan E. A., Margulies D. H. H-2Dd exploits a four residue peptide binding motif. J Exp Med. 1993 Dec 1;178(6):1877–1892. doi: 10.1084/jem.178.6.1877. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Corr M., Slanetz A. E., Boyd L. F., Jelonek M. T., Khilko S., al-Ramadi B. K., Kim Y. S., Maher S. E., Bothwell A. L., Margulies D. H. T cell receptor-MHC class I peptide interactions: affinity, kinetics, and specificity. Science. 1994 Aug 12;265(5174):946–949. doi: 10.1126/science.8052850. [DOI] [PubMed] [Google Scholar]
- Davis M. M., Bjorkman P. J. T-cell antigen receptor genes and T-cell recognition. Nature. 1988 Aug 4;334(6181):395–402. doi: 10.1038/334395a0. [DOI] [PubMed] [Google Scholar]
- Evavold B. D., Sloan-Lancaster J., Allen P. M. Tickling the TCR: selective T-cell functions stimulated by altered peptide ligands. Immunol Today. 1993 Dec;14(12):602–609. doi: 10.1016/0167-5699(93)90200-5. [DOI] [PubMed] [Google Scholar]
- Fields B. A., Ober B., Malchiodi E. L., Lebedeva M. I., Braden B. C., Ysern X., Kim J. K., Shao X., Ward E. S., Mariuzza R. A. Crystal structure of the V alpha domain of a T cell antigen receptor. Science. 1995 Dec 15;270(5243):1821–1824. doi: 10.1126/science.270.5243.1821. [DOI] [PubMed] [Google Scholar]
- Fields B. A., Ysern X., Poljak R. J., Shao X., Ward E. S., Mariuzza R. A. Crystallization and preliminary X-ray diffraction study of a bacterially produced T-cell antigen receptor V alpha domain. J Mol Biol. 1994 Jun 3;239(2):339–341. doi: 10.1006/jmbi.1994.1373. [DOI] [PubMed] [Google Scholar]
- Germain R. N. MHC-dependent antigen processing and peptide presentation: providing ligands for T lymphocyte activation. Cell. 1994 Jan 28;76(2):287–299. doi: 10.1016/0092-8674(94)90336-0. [DOI] [PubMed] [Google Scholar]
- Germain R. N., Margulies D. H. The biochemistry and cell biology of antigen processing and presentation. Annu Rev Immunol. 1993;11:403–450. doi: 10.1146/annurev.iy.11.040193.002155. [DOI] [PubMed] [Google Scholar]
- Ghosh P., Amaya M., Mellins E., Wiley D. C. The structure of an intermediate in class II MHC maturation: CLIP bound to HLA-DR3. Nature. 1995 Nov 30;378(6556):457–462. doi: 10.1038/378457a0. [DOI] [PubMed] [Google Scholar]
- Glockshuber R., Schmidt T., Plückthun A. The disulfide bonds in antibody variable domains: effects on stability, folding in vitro, and functional expression in Escherichia coli. Biochemistry. 1992 Feb 11;31(5):1270–1279. doi: 10.1021/bi00120a002. [DOI] [PubMed] [Google Scholar]
- Grasberger B., Minton A. P., DeLisi C., Metzger H. Interaction between proteins localized in membranes. Proc Natl Acad Sci U S A. 1986 Sep;83(17):6258–6262. doi: 10.1073/pnas.83.17.6258. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hilyard K. L., Reyburn H., Chung S., Bell J. I., Strominger J. L. Binding of soluble natural ligands to a soluble human T-cell receptor fragment produced in Escherichia coli. Proc Natl Acad Sci U S A. 1994 Sep 13;91(19):9057–9061. doi: 10.1073/pnas.91.19.9057. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hoo W. F., Lacy M. J., Denzin L. K., Voss E. W., Jr, Hardman K. D., Kranz D. M. Characterization of a single-chain T-cell receptor expressed in Escherichia coli. Proc Natl Acad Sci U S A. 1992 May 15;89(10):4759–4763. doi: 10.1073/pnas.89.10.4759. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huang D. B., Chang C. H., Ainsworth C., Brünger A. T., Eulitz M., Solomon A., Stevens F. J., Schiffer M. Comparison of crystal structures of two homologous proteins: structural origin of altered domain interactions in immunoglobulin light-chain dimers. Biochemistry. 1994 Dec 13;33(49):14848–14857. doi: 10.1021/bi00253a024. [DOI] [PubMed] [Google Scholar]
- Jardetzky T. S., Brown J. H., Gorga J. C., Stern L. J., Urban R. G., Chi Y. I., Stauffacher C., Strominger J. L., Wiley D. C. Three-dimensional structure of a human class II histocompatibility molecule complexed with superantigen. Nature. 1994 Apr 21;368(6473):711–718. doi: 10.1038/368711a0. [DOI] [PubMed] [Google Scholar]
- Kelley R. F., O'Connell M. P., Carter P., Presta L., Eigenbrot C., Covarrubias M., Snedecor B., Bourell J. H., Vetterlein D. Antigen binding thermodynamics and antiproliferative effects of chimeric and humanized anti-p185HER2 antibody Fab fragments. Biochemistry. 1992 Jun 23;31(24):5434–5441. doi: 10.1021/bi00139a003. [DOI] [PubMed] [Google Scholar]
- Koop B. F., Rowen L., Wang K., Kuo C. L., Seto D., Lenstra J. A., Howard S., Shan W., Deshpande P., Hood L. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. Genomics. 1994 Feb;19(3):478–493. doi: 10.1006/geno.1994.1097. [DOI] [PubMed] [Google Scholar]
- Kozlowski S., Takeshita T., Boehncke W. H., Takahashi H., Boyd L. F., Germain R. N., Berzofsky J. A., Margulies D. H. Excess beta 2 microglobulin promoting functional peptide association with purified soluble class I MHC molecules. Nature. 1991 Jan 3;349(6304):74–77. doi: 10.1038/349074a0. [DOI] [PubMed] [Google Scholar]
- Kurucz I., Jost C. R., George A. J., Andrew S. M., Segal D. M. A bacterially expressed single-chain Fv construct from the 2B4 T-cell receptor. Proc Natl Acad Sci U S A. 1993 May 1;90(9):3830–3834. doi: 10.1073/pnas.90.9.3830. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kurucz I., Titus J. A., Jost C. R., Segal D. M. Correct disulfide pairing and efficient refolding of detergent-solubilized single-chain Fv proteins from bacterial inclusion bodies. Mol Immunol. 1995 Dec;32(17-18):1443–1452. doi: 10.1016/0161-5890(95)00105-0. [DOI] [PubMed] [Google Scholar]
- Lai M. Z., Huang S. Y., Briner T. J., Guillet J. G., Smith J. A., Gefter M. L. T cell receptor gene usage in the response to lambda repressor cI protein. An apparent bias in the usage of a V alpha gene element. J Exp Med. 1988 Sep 1;168(3):1081–1097. doi: 10.1084/jem.168.3.1081. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lilie H., Buchner J. Domain interactions stabilize the alternatively folded state of an antibody Fab fragment. FEBS Lett. 1995 Mar 27;362(1):43–46. doi: 10.1016/0014-5793(95)00203-l. [DOI] [PubMed] [Google Scholar]
- Lilie H., Jaenicke R., Buchner J. Characterization of a quaternary-structured folding intermediate of an antibody Fab-fragment. Protein Sci. 1995 May;4(5):917–924. doi: 10.1002/pro.5560040511. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lilie H., Rudolph R., Buchner J. Association of antibody chains at different stages of folding: prolyl isomerization occurs after formation of quaternary structure. J Mol Biol. 1995 Apr 21;248(1):190–201. doi: 10.1006/jmbi.1995.0211. [DOI] [PubMed] [Google Scholar]
- Matis L. A. The molecular basis of T-cell specificity. Annu Rev Immunol. 1990;8:65–82. doi: 10.1146/annurev.iy.08.040190.000433. [DOI] [PubMed] [Google Scholar]
- Matthews B. W. Solvent content of protein crystals. J Mol Biol. 1968 Apr 28;33(2):491–497. doi: 10.1016/0022-2836(68)90205-2. [DOI] [PubMed] [Google Scholar]
- McPhie P., Shrager R. I. An investigation of the thermal unfolding of swine pepsinogen using circular dichroism. Arch Biochem Biophys. 1992 Feb 14;293(1):46–53. doi: 10.1016/0003-9861(92)90363-2. [DOI] [PubMed] [Google Scholar]
- Minton A. P. Confinement as a determinant of macromolecular structure and reactivity. II. Effects of weakly attractive interactions between confined macrosolutes and confining structures. Biophys J. 1995 Apr;68(4):1311–1322. doi: 10.1016/S0006-3495(95)80304-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Müller J. D., Nienhaus G. U., Tetin S. Y., Voss E. W. Ligand binding to anti-fluorescyl antibodies: stability of the antigen binding site. Biochemistry. 1994 May 24;33(20):6221–6227. doi: 10.1021/bi00186a023. [DOI] [PubMed] [Google Scholar]
- Natarajan K., Burstyn D., Zauderer M. Major histocompatibility complex determinants select T-cell receptor alpha chain variable region dominance in a peptide-specific response. Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):8874–8878. doi: 10.1073/pnas.89.19.8874. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Okada C. Y., Holzmann B., Guidos C., Palmer E., Weissman I. L. Characterization of a rat monoclonal antibody specific for a determinant encoded by the V beta 7 gene segment. Depletion of V beta 7+ T cells in mice with Mls-1a haplotype. J Immunol. 1990 May 1;144(9):3473–3477. [PubMed] [Google Scholar]
- Parker K. C., Wiley D. C. Overexpression of native human beta 2-microglobulin in Escherichia coli and its purification. Gene. 1989 Nov 15;83(1):117–124. doi: 10.1016/0378-1119(89)90409-5. [DOI] [PubMed] [Google Scholar]
- Pircher H., Rebaï N., Groettrup M., Grégoire C., Speiser D. E., Happ M. P., Palmer E., Zinkernagel R. M., Hengartner H., Malissen B. Preferential positive selection of V alpha 2+ CD8+ T cells in mouse strains expressing both H-2k and T cell receptor V alpha a haplotypes: determination with a V alpha 2-specific monoclonal antibody. Eur J Immunol. 1992 Feb;22(2):399–404. doi: 10.1002/eji.1830220217. [DOI] [PubMed] [Google Scholar]
- Ploegh H., Benaroch P. Immunology. MHC class II dimer of dimers. Nature. 1993 Jul 1;364(6432):16–17. doi: 10.1038/364016d0. [DOI] [PubMed] [Google Scholar]
- Plückthun A. Mono- and bivalent antibody fragments produced in Escherichia coli: engineering, folding and antigen binding. Immunol Rev. 1992 Dec;130:151–188. doi: 10.1111/j.1600-065x.1992.tb01525.x. [DOI] [PubMed] [Google Scholar]
- Provencher S. W., Glöckner J. Estimation of globular protein secondary structure from circular dichroism. Biochemistry. 1981 Jan 6;20(1):33–37. doi: 10.1021/bi00504a006. [DOI] [PubMed] [Google Scholar]
- Schiffer M., Chang C. H., Naik V. M., Stevens F. J. Analysis of immunoglobulin domain interactions. Evidence for a dominant role of salt bridges. J Mol Biol. 1988 Oct 5;203(3):799–802. doi: 10.1016/0022-2836(88)90210-0. [DOI] [PubMed] [Google Scholar]
- Schlueter C. J., Schodin B. A., Tetin S. Y., Kranz D. M. Specificity and binding properties of a single-chain T cell receptor. J Mol Biol. 1996 Mar 15;256(5):859–869. doi: 10.1006/jmbi.1996.0132. [DOI] [PubMed] [Google Scholar]
- Steipe B., Plückthun A., Huber R. Refined crystal structure of a recombinant immunoglobulin domain and a complementarity-determining region 1-grafted mutant. J Mol Biol. 1992 Jun 5;225(3):739–753. doi: 10.1016/0022-2836(92)90398-4. [DOI] [PubMed] [Google Scholar]
- Stern L. J., Brown J. H., Jardetzky T. S., Gorga J. C., Urban R. G., Strominger J. L., Wiley D. C. Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide. Nature. 1994 Mar 17;368(6468):215–221. doi: 10.1038/368215a0. [DOI] [PubMed] [Google Scholar]
- Studier F. W., Rosenberg A. H., Dunn J. J., Dubendorff J. W. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 1990;185:60–89. doi: 10.1016/0076-6879(90)85008-c. [DOI] [PubMed] [Google Scholar]
- Wang K., Kuo C. L., Cheng K. C., Lee M. K., Paeper B., Koop B. F., Yoo T. J., Hood L. Structural analysis of the mouse T-cell receptor Tcra V2 subfamily. Immunogenetics. 1994;40(2):116–122. doi: 10.1007/BF00188174. [DOI] [PubMed] [Google Scholar]
- Ward E. S. Secretion of T cell receptor fragments from recombinant Escherichia coli cells. J Mol Biol. 1992 Apr 20;224(4):885–890. doi: 10.1016/0022-2836(92)90455-s. [DOI] [PubMed] [Google Scholar]
- Yewdell J. W., Bennink J. R. Cell biology of antigen processing and presentation to major histocompatibility complex class I molecule-restricted T lymphocytes. Adv Immunol. 1992;52:1–123. doi: 10.1016/s0065-2776(08)60875-5. [DOI] [PubMed] [Google Scholar]
