Abstract
The existence of a neurofilament-deficient mutant of Japanese quail was recently documented (Yamasaki, H., C. Itakura, and M. Mizutani. 1991. Acta Neuropathol. 82:427-434), but the genetic events leading to the neurofilament deficiency have yet to be determined. Our molecular biological analyses revealed that the expression of neurofilament-L (NF- L) gene was specifically repressed in neurons of this mutant. To search for mutation(s) responsible for the shutdown of this gene expression, we cloned and sequenced the NF-L genes in the wild-type and mutant quails. It is eventually found that the NF-L gene in the mutant includes a nonsense mutation at the deduced amino acid residue 114, indicating that the mutant is incapable of producing even a trace amount of polymerization-competent NF-L protein at any situation. The identification of this nonsense mutation provides us with a solid basis on which molecular mechanisms underlying the alteration in the neuronal cytoskeletal architecture in the mutant should be interpreted.
Full Text
The Full Text of this article is available as a PDF (1.6 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Balin B. J., Lee V. M. Individual neurofilament subunits reassembled in vitro exhibit unique biochemical, morphological and immunological properties. Brain Res. 1991 Aug 16;556(2):196–208. doi: 10.1016/0006-8993(91)90307-h. [DOI] [PubMed] [Google Scholar]
- Barnes W. M. Sequencing DNA with dideoxyribonucleotides as chain terminators: hints and strategies for big projects. Methods Enzymol. 1987;152:538–556. doi: 10.1016/0076-6879(87)52060-2. [DOI] [PubMed] [Google Scholar]
- Beaudet L., Charron G., Houle D., Tretjakoff I., Peterson A., Julien J. P. Intragenic regulatory elements contribute to transcriptional control of the neurofilament light gene. Gene. 1992 Jul 15;116(2):205–214. doi: 10.1016/0378-1119(92)90517-s. [DOI] [PubMed] [Google Scholar]
- Brawerman G. mRNA decay: finding the right targets. Cell. 1989 Apr 7;57(1):9–10. doi: 10.1016/0092-8674(89)90166-9. [DOI] [PubMed] [Google Scholar]
- Charnas L. R., Szaro B. G., Gainer H. Identification and developmental expression of a novel low molecular weight neuronal intermediate filament protein expressed in Xenopus laevis. J Neurosci. 1992 Aug;12(8):3010–3024. doi: 10.1523/JNEUROSCI.12-08-03010.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem. 1987 Apr;162(1):156–159. doi: 10.1006/abio.1987.9999. [DOI] [PubMed] [Google Scholar]
- Church G. M., Gilbert W. Genomic sequencing. Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991–1995. doi: 10.1073/pnas.81.7.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cox K. H., DeLeon D. V., Angerer L. M., Angerer R. C. Detection of mrnas in sea urchin embryos by in situ hybridization using asymmetric RNA probes. Dev Biol. 1984 Feb;101(2):485–502. doi: 10.1016/0012-1606(84)90162-3. [DOI] [PubMed] [Google Scholar]
- Czosnek H., Soifer D., Mack K., Wisniewski H. M. Similarity of neurofilament proteins from different parts of the rabbit nervous system. Brain Res. 1981 Jul 20;216(2):387–398. doi: 10.1016/0006-8993(81)90140-2. [DOI] [PubMed] [Google Scholar]
- D'Alessio J. M., Gerard G. F. Second-strand cDNA synthesis with E. coli DNA polymerase I and RNase H: the fate of information at the mRNA 5' terminus and the effect of E. coli DNA ligase. Nucleic Acids Res. 1988 Mar 25;16(5):1999–2014. doi: 10.1093/nar/16.5.1999. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Daar I. O., Maquat L. E. Premature translation termination mediates triosephosphate isomerase mRNA degradation. Mol Cell Biol. 1988 Feb;8(2):802–813. doi: 10.1128/mcb.8.2.802. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Danner D. B. Recovery of DNA fragments from gels by transfer to DEAE-paper in an electrophoresis chamber. Anal Biochem. 1982 Sep 1;125(1):139–142. doi: 10.1016/0003-2697(82)90394-3. [DOI] [PubMed] [Google Scholar]
- Dautigny A., Pham-Dinh D., Roussel C., Felix J. M., Nussbaum J. L., Jollès P. The large neurofilament subunit (NF-H) of the rat: cDNA cloning and in situ detection. Biochem Biophys Res Commun. 1988 Aug 15;154(3):1099–1106. doi: 10.1016/0006-291x(88)90254-9. [DOI] [PubMed] [Google Scholar]
- Geisler N., Weber K. Self-assembly in Vitro of the 68,000 molecular weight component of the mammalian neurofilament triplet proteins into intermediate-sized filaments. J Mol Biol. 1981 Sep 25;151(3):565–571. doi: 10.1016/0022-2836(81)90011-5. [DOI] [PubMed] [Google Scholar]
- Gill S. R., Wong P. C., Monteiro M. J., Cleveland D. W. Assembly properties of dominant and recessive mutations in the small mouse neurofilament (NF-L) subunit. J Cell Biol. 1990 Nov;111(5 Pt 1):2005–2019. doi: 10.1083/jcb.111.5.2005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gotoda T., Yamada N., Murase T., Inaba T., Ishibashi S., Shimano H., Koga S., Yazaki Y., Furuichi Y., Takaku F. Occurrence of multiple aberrantly spliced mRNAs upon a donor splice site mutation that causes familial lipoprotein lipase deficiency. J Biol Chem. 1991 Dec 25;266(36):24757–24762. [PubMed] [Google Scholar]
- Hentze M. W. Determinants and regulation of cytoplasmic mRNA stability in eukaryotic cells. Biochim Biophys Acta. 1991 Nov 11;1090(3):281–292. doi: 10.1016/0167-4781(91)90191-n. [DOI] [PubMed] [Google Scholar]
- Hisanaga S., Hirokawa N. Structure of the peripheral domains of neurofilaments revealed by low angle rotary shadowing. J Mol Biol. 1988 Jul 20;202(2):297–305. doi: 10.1016/0022-2836(88)90459-7. [DOI] [PubMed] [Google Scholar]
- Hoffman P. N., Cleveland D. W., Griffin J. W., Landes P. W., Cowan N. J., Price D. L. Neurofilament gene expression: a major determinant of axonal caliber. Proc Natl Acad Sci U S A. 1987 May;84(10):3472–3476. doi: 10.1073/pnas.84.10.3472. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Holton T. A., Graham M. W. A simple and efficient method for direct cloning of PCR products using ddT-tailed vectors. Nucleic Acids Res. 1991 Mar 11;19(5):1156–1156. doi: 10.1093/nar/19.5.1156. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Julien J. P., Grosveld F., Yazdanbaksh K., Flavell D., Meijer D., Mushynski W. The structure of a human neurofilament gene (NF-L): a unique exon-intron organization in the intermediate filament gene family. Biochim Biophys Acta. 1987 Jun 6;909(1):10–20. doi: 10.1016/0167-4781(87)90041-8. [DOI] [PubMed] [Google Scholar]
- Julien J. P., Ramachandran K., Grosveld F. Cloning of a cDNA encoding the smallest neurofilament protein from the rat. Biochim Biophys Acta. 1985 Aug 21;825(4):398–404. doi: 10.1016/0167-4781(85)90067-3. [DOI] [PubMed] [Google Scholar]
- Kadowaki T., Kadowaki H., Taylor S. I. A nonsense mutation causing decreased levels of insulin receptor mRNA: detection by a simplified technique for direct sequencing of genomic DNA amplified by the polymerase chain reaction. Proc Natl Acad Sci U S A. 1990 Jan;87(2):658–662. doi: 10.1073/pnas.87.2.658. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
- Lasek R. J., Oblinger M. M., Drake P. F. Molecular biology of neuronal geometry: expression of neurofilament genes influences axonal diameter. Cold Spring Harb Symp Quant Biol. 1983;48(Pt 2):731–744. doi: 10.1101/sqb.1983.048.01.076. [DOI] [PubMed] [Google Scholar]
- Lasek R. J., Phillips L., Katz M. J., Autilio-Gambetti L. Function and evolution of neurofilament proteins. Ann N Y Acad Sci. 1985;455:462–478. doi: 10.1111/j.1749-6632.1985.tb50429.x. [DOI] [PubMed] [Google Scholar]
- Lathe R., Kieny M. P., Skory S., Lecocq J. P. Linker tailing: unphosphorylated linker oligonucleotides for joining DNA termini. DNA. 1984;3(2):173–182. doi: 10.1089/dna.1984.3.173. [DOI] [PubMed] [Google Scholar]
- Lewis S. A., Cowan N. J. Anomalous placement of introns in a member of the intermediate filament multigene family: an evolutionary conundrum. Mol Cell Biol. 1986 May;6(5):1529–1534. doi: 10.1128/mcb.6.5.1529. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liem R. K., Hutchison S. B. Purification of individual components of the neurofilament triplet: filament assembly from the 70 000-dalton subunit. Biochemistry. 1982 Jun 22;21(13):3221–3226. doi: 10.1021/bi00256a029. [DOI] [PubMed] [Google Scholar]
- Mizutani M., Nunoya T., Yamasaki H., Itakura C. The hypotrophic axonopathy mutant in Japanese quail. J Hered. 1992 May-Jun;83(3):234–235. doi: 10.1093/oxfordjournals.jhered.a111201. [DOI] [PubMed] [Google Scholar]
- Monteiro M. J., Hoffman P. N., Gearhart J. D., Cleveland D. W. Expression of NF-L in both neuronal and nonneuronal cells of transgenic mice: increased neurofilament density in axons without affecting caliber. J Cell Biol. 1990 Oct;111(4):1543–1557. doi: 10.1083/jcb.111.4.1543. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ohara O., Ishizaki J., Nakano T., Arita H., Teraoka H. A simple and sensitive method for determining transcription initiation site: identification of two transcription initiation sites in rat group II phospholipase A2 gene. Nucleic Acids Res. 1990 Dec 11;18(23):6997–7002. doi: 10.1093/nar/18.23.6997. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Phillips L. L., Autilio-Gambetti L., Lasek R. J. Bodian's silver method reveals molecular variation in the evolution of neurofilament proteins. Brain Res. 1983 Nov 14;278(1-2):219–223. doi: 10.1016/0006-8993(83)90240-8. [DOI] [PubMed] [Google Scholar]
- Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
- Schultheiss T., Lin Z. X., Ishikawa H., Zamir I., Stoeckert C. J., Holtzer H. Desmin/vimentin intermediate filaments are dispensable for many aspects of myogenesis. J Cell Biol. 1991 Sep;114(5):953–966. doi: 10.1083/jcb.114.5.953. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Scott D., Smith K. E., O'Brien B. J., Angelides K. J. Characterization of mammalian neurofilament triplet proteins. Subunit stoichiometry and morphology of native and reconstituted filaments. J Biol Chem. 1985 Sep 5;260(19):10736–10747. [PubMed] [Google Scholar]
- Shea T. B., Balikian P., Beermann M. L. Aluminum inhibits neurofilament protein degradation by multiple cytoskeleton-associated proteases. FEBS Lett. 1992 Jul 28;307(2):195–198. doi: 10.1016/0014-5793(92)80766-a. [DOI] [PubMed] [Google Scholar]
- Urlaub G., Mitchell P. J., Ciudad C. J., Chasin L. A. Nonsense mutations in the dihydrofolate reductase gene affect RNA processing. Mol Cell Biol. 1989 Jul;9(7):2868–2880. doi: 10.1128/mcb.9.7.2868. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vogeli G., Kaytes P. S. Amplification, storage, and replication of libraries. Methods Enzymol. 1987;152:407–415. doi: 10.1016/0076-6879(87)52047-x. [DOI] [PubMed] [Google Scholar]
- Yamasaki H., Bennett G. S., Itakura C., Mizutani M. Defective expression of neurofilament protein subunits in hereditary hypotrophic axonopathy of quail. Lab Invest. 1992 Jun;66(6):734–743. [PubMed] [Google Scholar]
- Yamasaki H., Itakura C., Mizutani M. Hereditary hypotrophic axonopathy with neurofilament deficiency in a mutant strain of the Japanese quail. Acta Neuropathol. 1991;82(6):427–434. doi: 10.1007/BF00293376. [DOI] [PubMed] [Google Scholar]
- Zopf D., Hermans-Borgmeyer I., Gundelfinger E. D., Betz H. Identification of gene products expressed in the developing chick visual system: characterization of a middle-molecular-weight neurofilament cDNA. Genes Dev. 1987 Sep;1(7):699–708. doi: 10.1101/gad.1.7.699. [DOI] [PubMed] [Google Scholar]