TABLE 3.

Calculation of QTL colocation probabilities for candidate polymorphism SNP21, assumed to be located at 170 cM on chromosome 3, colocating with QTL from the simulated QTL mapping family with n = 300 progeny

	Marker Mi
	i = 8	i = 9	i = 10	i = 11
Position (cM)	140	160	180	200
|V(Mi)|	20	20	20	20
πQ(V(Mi))	0.06	0.06	0.06	0.06
g(Mi | yq)	0.003	0.089	0.923	0.004
BQ(x)	0.054	1.60	16.6	0.072
BQ(x)Bc	5.3	157.6	1634.8	6.71
100 × BQ(x)Bcπc/(1 − πc + BQ(x)Bcπc)	0.0106	0.3143	3.1662	0.0142

π_c = 1/50,000, B_c = 98.4.