Abstract
Recent observations in cell culture provide evidence that negatively charged glycosaminoglycans (GAGs) at the surface of biological cells bind cationic cell-penetrating compounds (CPCs) and cluster during CPC binding, thereby contributing to their endocytotic uptake. The GAG binding and clustering occur in the low-micromolar concentration range and suggest a tight interaction between GAGs and CPCs, although the relation between binding affinity and specificity of this interaction remains to be investigated. We therefore measured the GAG binding and clustering of various mono- and multivalent CPCs such as DNA transfection vectors (polyethylenimine; 1,2-dioleoyl-3-trimethylammonium-propane), amino acid homopolymers (oligoarginine; oligolysine), and cell-penetrating peptides (Penetratin; HIV-1 Tat) by means of isothermal titration calorimetry and dynamic light scattering. We find that these structurally diverse CPCs share the property of GAG binding and clustering. The binding is very tight (microscopic dissociation constants between 0.34 and 1.34 μM) and thus biologically relevant. The hydrodynamic radius of the resulting aggregates ranges from 78 nm to 586 nm, suggesting that they consist of numerous GAG chains cross-linked by CPCs. Likewise, the membrane-permeant monovalent cation acridine orange leads to GAG binding and clustering, in contrast to its membrane-impermeant structural analogs propidium iodide and ethidium bromide. Because the binding and clustering of GAGs were found to be a common denominator of all CPCs tested, these properties might be helpful to identify further CPCs.
INTRODUCTION
The membrane of biological cells basically controls the influx and efflux of molecules. The manipulation of this barrier in biology and medicine with the intention either to promote the permeability, as for drug and gene therapy, or to inhibit the cellular uptake, as during viral infections, is therefore highly relevant. In this respect, cell-penetrating peptides (CPPs) have proven to be very efficient molecules because they cross intact cell membranes within seconds to minutes by a mechanism that is poorly understood (reviewed by Richard et al. (1)).
These molecules are of general interest because they can also facilitate the import of covalently and noncovalently bound drugs, genes, and macromolecules that would not otherwise cross the membrane. Their uptake mechanism proper, however, is controversial because of technical artifacts, limitations of model membranes employed, and noncomparable experimental approaches (1). CPPs have quite different chemical structures, but they share a high cationic charge density (Fig. 1), which rules out their passive permeation through the lipid membrane.
As an important primary step of CPP uptake, it has recently been observed in living cells that the CPP HIV-1 Tat-PTD leads to the clustering of cell-surface-bound molecules coinciding with the rapid uptake of this CPP into the cell plasma (2). Similarly, a clustering of cell-surface-bound molecules was observed during DNA transfection with the nonpeptidic cell-penetrating compound (CPC) polyethylenimine (3) and cationic lipofectants (4,5). Related in vivo studies suggest that cross-linking of glycosaminoglycan (GAG)-containing proteins is likely an important mediator of the cellular CPP uptake (6–12). This assumption is further substantiated by the observation that enzymatic or genetic removal of GAGs from the surface of living cells reduces or abolishes the uptake of CPPs in vivo (2,12–14). In analogy to such in vivo observations, GAG binding and clustering have recently been substantiated in vitro for the interaction of Tat with heparan sulfate (15).
Our study aimed at investigating the question of whether further CPCs share the property of GAG binding and, in particular, GAG clustering. Furthermore, knowledge of related thermodynamic binding parameters is decisive to understand the delicate balance among the optimum molar ratio of cargo and CPC, extracellular stability of this uptake complex, and intracellular release of the cargo (16).
We investigated various mono- and polycationic CPCs with respect to their properties of GAG binding and clustering in vitro. Clustering is of particular importance in recent discussions of adsorptive endocytosis (6). The CPCs are all known to pass the membrane of intact cells but differ considerably in their primary structure, valency, amine type, and pKa (Fig. 1). The monovalent cation acridine orange was also included in our investigation because of its structural analogy to propidium iodide and ethidium bromide, molecules that are both excluded from living cells (17). In contrast, acridine orange is taken up by living cells (18). In analogy to CPCs, its elevated pKa (19), the energy dependence of its in vivo uptake (20), the need of active loading procedures for inclusion into membrane vesicles (21), and the limited membrane diffusion (22) all make passive diffusion across the membrane unlikely as an uptake mechanism. Heparin was selected as GAG because heparin-like N-sulfo domains provide ligand recognition in cell-surface-associated heparan sulfate (23).
METHODS
Material
Porcine intestinal mucosa heparin (sodium salt; sulfate content of 11.3%; average mol wt 13,000) was from Celsus Laboratories (Cincinnati, OH). l-α-dioleoyl-phosphatidylcholine (DOPC) and 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP) were obtained from Avanti Polar Lipids (Alabaster, AL). These lipids were used to produce small unilamellar vesicles by sonication. Linear polyethylenimine (LPEI) (mol wt 2500) was purchased from Polysciencences (Eppelheim, Germany), and all other chemicals of HPLC grade were from Sigma-Aldrich (Buchs, Switzerland).
Peptide synthesis
Solid-phase peptide synthesis of HIV Tat-PTD, penetratin, nona-l-arginine, and hexadeca-l-lysine was performed on an Abimed EPS221 peptide synthesizer (Langenfeld, Germany) using Fmoc-protected amino acids and preloaded NovaSyn TGA resins. After synthesis, the peptides were purified by preparative high-pressure liquid chromatography. The mass of the peptides was confirmed by electrospray ionization mass spectrometry, and peptide purity (>98%) was measured by analytical high-pressure liquid chromatography. The effective peptide concentration was measured as amino acid content after acid hydrolysis.
Isothermal titration calorimetry
The heat flow resulting from the binding of CPCs to heparin was measured with high-sensitivity isothermal titration calorimetry using a MicroCal Omega and VP-ITC calorimeter (Northampton, MA) with a reaction cell volume of 1.4 ml. The ITC data were evaluated according to the multisite binding model (24):
(1) |
where [L]b and [L] are the concentrations of bound and free ligand, respectively, [GAG]t is the total concentration of the GAG, Ki is the microscopic binding constant to each individual binding site in the GAG, and n are the number of ligands bound per GAG molecule. Ki, n, and the ligand binding enthalpy, may be directly determined by a three-parameter least-squares fit to the calorimetric data because the heat released in injection i, δQi, is proportional to the concentration of bound ligand per injection by
(2) |
where δ[L]b,i is the change in bound ligand concentration upon injection i, and V is the actual reaction volume. For a macromolecule with n independent binding sites, the binding constant of the individual binding site varies with the degree of saturation for statistical reasons (24), with the first ligand binding with the macroscopic binding constant K1 = n·Ki, and the last with Kn = Ki/n. For better comparison with literature, dissociation constants Kd are reported that are just the inverse of the binding constants.
Static right-angle light scattering
Static light scattering at a right angle was measured with a Jasco FP 777 fluorimeter (Tokyo, Japan) at a wavelength of 350 nm under constant stirring and at a temperature of 28°C. Quartz cuvettes with inner lengths of 1 cm were filled with 1.4 ml of heparin solution, and 10-μl aliquots of the ligand solution were added at 5-min intervals.
Dynamic light scattering
Dynamic light scattering (DLS) experiments were performed on an ALV/CGS-5022F instrument (ALV, Langen, Germany) equipped with a HeNe laser (λ = 632.8 nm) and an ALV-5000/EPP multi-tau digital correlator. Reactant solutions were filtered (0.22 μm; Millipore, Billerica, MA) before mixing. Measurements were performed in 1 cm (outer diameter) cylindrical cuvettes at 20°C using eight different scattering angles θ (30–150°). The normalized intensity autocorrelation functions were analyzed using a second-order cumulant analysis (25) yielding the collective diffusion coefficient D. The latter was used to calculate the hydrodynamic radius (Rh) using the Stokes-Einstein relationship Rh = kT/6πηD, where k is the Boltzmann's constant, T the absolute temperature, and η the viscosity of water. The reported Rh was obtained by extrapolating Rh of eight different angles to zero scattering angle. The width of the Rh distribution was calculated as full width at half-maximum by means of the diffusion coefficient distribution (25).
To estimate the maximum number of heparin chains within a CPC-GAG cluster, the hydrodynamic volume of the cluster was assumed to be of spherical shape () and was divided by the volume of a single heparin chain saturated with the defined number of ligands as measured by ITC. The volume of the individual molecules was calculated from known protein database entries as the Connolly solvent-excluded volume (26) using the software Chem3D Pro (Cambridge, MA).
RESULTS AND DISCUSSION
Binding affinity
Despite the considerable difference in their overall structures (Fig. 1), all CPCs were found to bind the GAG with a high affinity (Fig. 2) characterized by a distinct number of binding sites and a dissociation constant of the individual binding site in the submicromolar range (Table 1). The observed affinity for GAGs is thus biologically relevant because the CPP concentration generally required for efficient cell penetration (1–10 μM) and physiological GAG concentration are of similar magnitude. For fibroblasts, for example, 2 μg of sulfated GAGs/mg dry tissue are reported (27), corresponding to a macroscopic GAG concentration of ∼7 μM using a typical molecular weight of GAGs found in fibroblasts (28) and an average tissue water content. The effective concentration of individual binding sites is even higher because each GAG can bind several CPPs (Table 1). Compared with CPP binding to GAGs of low sulfate content or short chain length (15,29), the current data indicate an up to fourfold higher binding affinity, supporting earlier observations that both chain length and sulfate content of GAGs influence the binding affinity in the interaction with CPPs (30).
TABLE 1.
ITC
|
DLS
|
||||||||
---|---|---|---|---|---|---|---|---|---|
Ligand and charge (zCPC) at given pH* | Kd,i (nM)† | n binding sites per heparin‡ (nligands/nheparin) | n × zCPC | Kd,1 (nM)§ | Reaction enthalpy (kcal/mol CPC) | Entropy (kcal /mol CPC) | Heat capacity change¶ (cal/mol CPC/K) | Rh** (nm) | FWHM†† of Rh (nm) |
HIV Tat-PTD8+ | 443 ± 178 | 6.68 ± 0.57 | 53.4 ± 4.55 | 67.9 ± 30.5 | −12.3 ± 0.33 | −3.47 ± 0.37 | 38.6 | 94.4 ± 5.9 | 36.1 ± 6.6 |
Penetratin7+ | 338 ± 105 | 6.79 ± 0.45 | 47.5 ± 3.18 | 50.6 ± 19.0 | −11.6 ± 0.12 | −2.63 ± 0.18 | −128 | 129 ± 18.7 | 51.1 ± 8.4 |
Nona-l-arginine9+ | 459 ± 115 | 5.38 ± 0.62 | 48.4 ± 5.54 | 87.9 ± 33.3 | −12.8 ± 2.65 | −4.02 ± 2.80 | 89.3 | 98.3 ± 6.2 | 36.4 ± 5.2 |
PLL1616+ | 543 ± 253 | 2.91 ± 0.30 | 46.6 ± 4.86 | 198 ± 108 | −8.50 ± 0.11 | 0.18 ± 0.30 | 11.0 | 77.7 ± 6.8 | 24.8 ± 6.9 |
LPEI≈20+ (2.5 kDa); pH 7.4 | 741 ± 104 | 3.36 ± 0.51 | 67.3 ± 10.2 | 224 ± 52.1 | −16.5 ± 2.12 | −8.08 ± 2.20 | −235 | 131 ± 14.1 | 28.9 ± 7.2 |
LPEI≈58+ (2.5 kDa); pH 5.0 | 531 ± 221 | 1.10 ± 0.27 | 64.0 ± 15.9 | 467 ± 94.9 | −37.1 ± 4.98 | −28.4 ± 4.1 | −76.1 | 123 ± 12.2 | 38.1 ± 4.1 |
DOTAP1+ (as 30-nm small unilamellar vesicles; nDOTAP: nDOPC = 3:7) | 1345 ± 417 | 31.5 ± 3.09 | 31.5 ± 3.09 | 45.7 ± 19.0 | −0.49 ± 0.07 | 7.82 ± 0.53 | −25.7 | 586 ± 149 | 428 ± 136 |
Acridine orange1+ | 868 ± 293 | 65.7 ± 6.8 | 65.7 ± 6.8 | 13.3 ± 4.6 | −3.82 ± 0.27 | 4.59 ± 0.48 | −32.0 | 311 ± 56.7 | 234 ± 92.5 |
Ethidium bromide1+ | No binding observed‡‡ | <10 | |||||||
Propidium iodide2+ | No binding observed | <10 | |||||||
l-arginine1+ | No binding observed | <10 |
Conditions and pH (7.4) as described in Fig. 2; LPEI was measured additionally at pH 5.00 (133 mM NaCl, 30 mM acetate). Results are reported as mean ± SD from four individual sample preparations.
Microscopic dissociation constant (Kd,i) of n individual binding sites found per heparin chain.
Stoichiometry as experimentally determined (ITC) for 100% of heparin's multiple binding sites saturated with the specific ligand; heparin had a sulfur content of 11.3%, yielding an average of 45.8 sulfate groups or a total of 68.2 negative charges (including carboxyl groups) per heparin (average mol wt 13,000).
Macroscopic dissociation constant (Kd,1) for the first accessible binding site in the GAG.
Molar heat capacity change at constant pressure () as calculated from the slope of as a function of different temperatures (8, 18, 28, 38, 48, and 58°C).
Hydrodynamic radius (Rh) as experimentally determined for 50% of heparin's binding sites (13.7 μM, 1.4 ml) saturated with the ligand; except for AOR and DOTAP, which were measured at 10% and 5% saturation of heparin, respectively, because at higher molar ratios, Rh exceeded the laser's wavelength. At current settings, the lower detection limit was ∼10 nm.
Width of the Rh distribution was calculated as full width at half-maximum (FWHM).
Physiological ionic strength apparently prevents binding of ethidium bromide to heparin (32).
Compared with the interaction of protein-based cell receptors with growth factors or cytokines, which usually bind in the low-nanomolar range, present dissociation constants in the high-nanomolar range presumably facilitate the release of the CPC after internalization of the binding site. Accordingly, the intracellular release and redistribution of CPCs to the nucleus are commonly observed after the CPC uptake (2,31), suggesting a tighter interaction of CPCs with intracellular compounds such as DNA (16).
Interestingly, the cationic DNA dyes ethidium bromide and propidium iodide do not bind the GAG at physiological ionic strength and low-micromolar concentration (Fig. 2, Table 1). For instance, ethidium bromide was reported to bind heparin in pure water (Kd ≈ 0.6 M), but not at physiological ionic strength (32). In contrast, acridine orange binds with Kd ≈ 0.87 μM (Table 1) (33), although all three dyes are known to bind DNA with high affinity (34). This remarkable difference and their different optical properties on polyelectrolyte binding (35) suggest that the binding of these cationic dyes to different polyanions follows different mechanisms. It is thus of future interest to clarify whether the pronounced difference in GAG binding is also the basis of their different biological uptake behavior, i.e., no membrane passage for ethidium and propidium (17) but rapid uptake and accumulation of acridine orange in endosomes (18,36).
Binding mechanism
At 28°C, the GAG binding was exothermic for all CPCs (Fig. 1). A negative enthalpy change makes the major contribution to the free energy change for most CPCs (Table 1). For hydrophobic CPCs, such as DOTAP and acridine orange (AOR), however, the reaction entropy provided the main binding force. This is most likely the consequence of the release of hydration water, which is further supported by the observed negative molar heat capacity change (see below).
Interestingly, the cationic charge alone is not sufficient to provide CPC binding to GAGs because a tight binding was found for nona-arginine but not for its monomer arginine compared at identical arginine monomer concentrations (Fig. 2). This suggests that electrostatic interactions at low-micromolar concentrations require a minimum charge density as corroborated by the polyelectrolyte theory (37).
The change in the molar heat capacity provides a good approximation to distinguish between electrostatic and hydrophobic contribution to the binding. Generally, a negative indicates a change in the solvent-accessible surface area (hydrophobic effect) (38), in contrast to a positive heat capacity, which often indicates the dominance of electrostatic interactions (39).
We find that the highly charged CPCs nona-arginine and HIV-1 Tat-PTD bind the GAG with a positive indicating that GAG binding is driven mainly by electrostatic forces. However, the amplitude of is lower than expected for a pure electrostatic interaction, suggesting additional hydrogen bonds in the binding reaction through interactions of guanidinium groups with sulfates and carboxylates (40–42).
In contrast, the amphipathic CPCs AOR and DOTAP display a negative indicating that GAG binding and aggregation are dominated by the decrease in the water-accessible surface area. This change in hydration is further supported by the gain in entropy (Table 1) that most likely results from water and counterion release during binding. These hydrophobic interactions might explain why these two monovalent CPCs bind the GAG in contrast to monovalent arginine. In support, it has been found that soluble acridine orange AOR can self-assemble when interacting with anionic polyelectrolytes or interfaces (33,43,44). It may be noted that the release of solvent water also plays a key role in binding and aggregation of polycations with other polyelectrolytes such as DNA (45–47).
Binding specificity
Despite larger differences in their primary structure, all CPCs were found to bind with high affinity to the GAG. It is therefore suggested that GAG binding requires a specific charge density of the CPC and neglects larger differences in their overall structure. This structural flexibility is further supported by the finding that d-isomers and retro-inverso sequences of CPPs also bind GAGs (48) and are efficiently taken up by living cells (31,49–51).
It is of interest whether a comparable structural flexibility is also allowed for GAGs, or whether the CPP binding requires a specific GAG structure that could be exploited for organ-specific targeting. Such specific GAG epitopes have been postulated but then revised for GAG-mediated growth-factor uptake (52). Likewise, recent studies demonstrated that a given CPP binds to a variety of different GAG types with the binding constant increasing as a function of the sulfate density (15) and chain length of the GAG (30). As a result, a lyase specific for a particular GAG type may be inefficient to completely abolish the CPC binding to GAGs in living cells, which previously led to discussions on whether or not the GAG subtype heparan sulfate is the only mediator of CPP uptake (1). The resulting high structural flexibility in the CPP-GAG interaction combined with the high binding affinity in the submicromolar range might thus explain why CPPs are efficiently internalized by many different cell strains (53), taking into account that GAGs are ubiquitously expressed in vertebrates and invertebrates, in contrast to specific receptor proteins.
Stoichiometry
The stoichiometry of the binding reactions corresponds approximately to charge neutralization (Table 1) with small deviations related to steric constraints. Small molecules such as AOR apparently adapt best to the heterogeneous anion distance in GAGs and thus encounter the greatest number of binding sites; in contrast, large molecules such as 30-nm DOTAP vesicles are less flexible and have the fewest binding sites. For LPEI, the stoichiometry is additionally affected by the pH because of its lower pKa (∼7) (54) compared with other CPCs that are maximally charged at physiological pH (quaternary ions or pKa > 10). As a result, cell-internal pH shifts as encountered during endosome acidification might affect the stoichiometry (Fig. 3) and tightness (Table 1) of the LPEI binding.
GAG clustering
CPPs differ considerably in their primary structure and physicochemical properties, suggesting that a unique conformation of the CPP is unlikely for binding to the biological cell surface receptor. Such interactions of maximized geometrical fit (55) would be stereospecific because of their natural content of l-isomeric amino acids. In contrast, endocytotic receptors react with a wider range of possible ligands (56) where the ligand binding may lead to clustering or capping of integral membrane constituents, such as GAG-containing proteoglycans (6–12) or N-linked GAGs (e.g., sialic acid type) (57,58). Such interactions affect the membrane curvature (59), lateral diffusion (8), and clustering (3,6–11) of their membrane anchor, cytoskeleton bundling (3,7,9,14), and activation of intracellular protein kinases (3,60–63), which are all considered crucial elements in recent views of endocytosis (56). We therefore were interested in whether CPCs not only bind GAGs, reflecting merely adsorption to the cell surface, but also induce the clustering of GAGs with consequences for endocytotic signals.
We find that all CPCs, on GAG binding, produce particles of considerable size as evident from the pronounced increase in light scattering in titration experiments (Fig. 3). The radius of the particles is 70 nm and larger (Fig. 4; Table 1), suggesting that these clusters consist of several GAG chains cross-linked by CPCs rather than of a single GAG chain saturated with the maximum number of ligands (Table 1). The maximum number of heparin molecules per cluster was estimated by dividing the hydrodynamic volume of the particles by the volume of a single heparin chain saturated with the known number of ligands (Table 1). The solvent-excluded volumes of HIV-1 Tat (47–57) and heparin (dp44) employed in this study are 1344 and 7863 Å3, respectively, based on their published structures in the protein database (1TAC and 1hpn (1C4, dp12), respectively). Accordingly, the observed GAG-CPC cluster (Rh = 94.4 nm) comprises up to 2.1 × 105 heparin molecules (each complexed with six or seven Tat molecules) depending on the actual state of hydration.
The current GAG clustering in vitro relates to the GAG capping recently observed in vivo (2,3). The size of the capping complexes and their visibility in living cells under the light microscope (2) depend on various aspects such as the molar ratio of the reactants (Fig. 3), the type of the CPC (Fig. 4), and also the type and length of the GAG (15). In contrast, no GAG clustering was observed for monomeric arginine, ethidium bromide, and propidium iodide (Fig. 3 and 4), as they do not bind the GAG at physiological ionic strength (Fig. 2). This agrees with their lack of endocytotic uptake (17).
CONCLUSIONS
The results presented here reveal that GAG binding and GAG clustering are common properties of many CPCs. This study shows that CPCs of four chemically unrelated groups react in a very similar fashion. The CPC-GAG interactions are characterized by a high affinity and display a defined number of binding sites. The interactions allow for a structural variability of both CPC and GAG provided a critical charge density of the reactants is met. Although this study reports findings in solution, it follows from cell culture work that CPCs may lead to GAG clustering on the surface of biological cells during the CPC uptake (2,3). Also, GAG clustering and subsequent cellular uptake was observed for specific antibodies against GAGs (9,11). In terms of a screening assay, clustering of GAGs might therefore be helpful to identify new cell-penetrating compounds.
Acknowledgments
We are grateful to Dr. Corinne Vebert (Department of Chemistry) for her precious advice on DLS. We also thank Therese Schulthess for excellent technical assistance.
This work was supported by the Swiss National Science Foundation under grant No. 3100-107793/1.
Editor: Jonathan B. Chaires.
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