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Journal of Clinical Microbiology logoLink to Journal of Clinical Microbiology
. 1995 Feb;33(2):287–291. doi: 10.1128/jcm.33.2.287-291.1995

Rapid detection of bovine viral diarrhea virus by using RNA extracted directly from assorted specimens and a one-tube reverse transcription PCR assay.

A L Hamel 1, M D Wasylyshen 1, G P Nayar 1
PMCID: PMC227934  PMID: 7714180

Abstract

We describe a simple method for the rapid detection of bovine viral diarrhea virus (BVDV) that uses a one-tube reverse transcription PCR (RT-PCR) and total RNA extracted directly from a variety of bovine specimens, including whole blood and tissues. Reagents for both RT and PCR were combined in a one-tube, single-buffer system, and amplification was performed with a single uninterrupted thermal cycling program. Using the novel cationic surfactant tetradecyltrimethylammonium oxalate (Catrimox-14), we consistently extracted RT-PCR-quality RNA from specimens containing blood. Amplification with primers derived from conserved sequences within the BVDV 5'-untranslated region yielded a 244-bp product. Assay specificity was confirmed by ethidium bromide-stained gel electrophoresis and by chemiluminescence-assayed Southern blot hybridizations involving BVDV 5'-untranslated region-specific digoxigenin-labelled cDNA probes. The assay detection level was 0.1 50% tissue culture infectious dose of BVDV when ethidium bromide-stained gel electrophoresis was used and 0.01 50% tissue culture infectious dose of BVDV when Southern blot hybridization was used. Our method is an alternative to the conventional cell culture assays used in a diagnostic laboratory and is an improvement over existing RT-PCR assays for BVDV.

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Selected References

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  1. Alansari H., Brock K. V., Potgieter L. N. Single and double polymerase chain reaction for detection of bovine viral diarrhea virus in tissue culture and sera. J Vet Diagn Invest. 1993 Apr;5(2):148–153. doi: 10.1177/104063879300500201. [DOI] [PubMed] [Google Scholar]
  2. Ali N., Jameel S. Direct detection of hepatitis C virus RNA in serum by reverse transcription PCR. Biotechniques. 1993 Jul;15(1):40–42. [PubMed] [Google Scholar]
  3. Bissey L. L., Williams A. K., Bolin S., Collisson E. W. Comparison of cytopathic and noncytopathic isolates of bovine viral diarrhea virus by oligonucleotide fingerprinting. J Vet Diagn Invest. 1991 Jan;3(1):16–21. doi: 10.1177/104063879100300104. [DOI] [PubMed] [Google Scholar]
  4. Bolin S. R., Matthews P. J., Ridpath J. F. Methods for detection and frequency of contamination of fetal calf serum with bovine viral diarrhea virus and antibodies against bovine viral diarrhea virus. J Vet Diagn Invest. 1991 Jul;3(3):199–203. doi: 10.1177/104063879100300302. [DOI] [PubMed] [Google Scholar]
  5. Brock K. V., Potgieter L. N. Detection of bovine viral diarrhea virus in serum from cattle by dot blot hybridization assay. Vet Microbiol. 1990 Sep;24(3-4):297–306. doi: 10.1016/0378-1135(90)90179-Y. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem. 1987 Apr;162(1):156–159. doi: 10.1006/abio.1987.9999. [DOI] [PubMed] [Google Scholar]
  7. Colett M. S., Larson R., Gold C., Strick D., Anderson D. K., Purchio A. F. Molecular cloning and nucleotide sequence of the pestivirus bovine viral diarrhea virus. Virology. 1988 Jul;165(1):191–199. doi: 10.1016/0042-6822(88)90672-1. [DOI] [PubMed] [Google Scholar]
  8. Collett M. S., Anderson D. K., Retzel E. Comparisons of the pestivirus bovine viral diarrhoea virus with members of the flaviviridae. J Gen Virol. 1988 Oct;69(Pt 10):2637–2643. doi: 10.1099/0022-1317-69-10-2637. [DOI] [PubMed] [Google Scholar]
  9. Dahle C. E., Macfarlane D. E. Isolation of RNA from cells in culture using Catrimox-14 cationic surfactant. Biotechniques. 1993 Dec;15(6):1102–1105. [PubMed] [Google Scholar]
  10. Deng R., Brock K. V. Molecular cloning and nucleotide sequence of a pestivirus genome, noncytopathic bovine viral diarrhea virus strain SD-1. Virology. 1992 Dec;191(2):867–869. doi: 10.1016/0042-6822(92)90262-n. [DOI] [PubMed] [Google Scholar]
  11. Dubovi E. J. Genetic diversity and BVD virus. Comp Immunol Microbiol Infect Dis. 1992 Jul;15(3):155–162. doi: 10.1016/0147-9571(92)90088-9. [DOI] [PubMed] [Google Scholar]
  12. Fang Z. A., Castro C. E. Simple modification of the single-step method of RNA isolation from rat liver. Biotechniques. 1991 Jun;10(6):734–736. [PubMed] [Google Scholar]
  13. Fristensky B. Feature expressions: creating and manipulating sequence datasets. Nucleic Acids Res. 1993 Dec 25;21(25):5997–6003. doi: 10.1093/nar/21.25.5997. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Fristensky B., Lis J., Wu R. Portable microcomputer software for nucleotide sequence analysis. Nucleic Acids Res. 1982 Oct 25;10(20):6451–6463. doi: 10.1093/nar/10.20.6451. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Katz J. B., Ridpath J. F., Bolin S. R. Presumptive diagnostic differentiation of hog cholera virus from bovine viral diarrhea and border disease viruses by using a cDNA nested-amplification approach. J Clin Microbiol. 1993 Mar;31(3):565–568. doi: 10.1128/jcm.31.3.565-568.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. King A. A., Harkness J. W. Viral contamination of foetal bovine serum. Vet Rec. 1975 Jul 5;97(1):16–16. doi: 10.1136/vr.97.1.16. [DOI] [PubMed] [Google Scholar]
  17. Lopez O. J., Osorio F. A., Donis R. O. Rapid detection of bovine viral diarrhea virus by polymerase chain reaction. J Clin Microbiol. 1991 Mar;29(3):578–582. doi: 10.1128/jcm.29.3.578-582.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Macfarlane D. E., Dahle C. E. Isolating RNA from whole blood--the dawn of RNA-based diagnosis? Nature. 1993 Mar 11;362(6416):186–188. doi: 10.1038/362186a0. [DOI] [PubMed] [Google Scholar]
  19. Meyers G., Tautz N., Stark R., Brownlie J., Dubovi E. J., Collett M. S., Thiel H. J. Rearrangement of viral sequences in cytopathogenic pestiviruses. Virology. 1992 Nov;191(1):368–386. doi: 10.1016/0042-6822(92)90199-Y. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Ming Y. Z., Di X., Gomez-Sanchez E. P., Gomez-Sanchez C. E. Improved downward capillary transfer for blotting of DNA and RNA. Biotechniques. 1994 Jan;16(1):58–59. [PubMed] [Google Scholar]
  21. Nordvåg B. Y., Husby G., Raafat el-Gewely M. Direct PCR of washed blood cells. Biotechniques. 1992 Apr;12(4):490–493. [PubMed] [Google Scholar]
  22. Panaccio M., Georgesz M., Lew A. M. FoLT PCR: a simple PCR protocol for amplifying DNA directly from whole blood. Biotechniques. 1993 Feb;14(2):238–243. [PubMed] [Google Scholar]
  23. Pearson W. R. Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol. 1990;183:63–98. doi: 10.1016/0076-6879(90)83007-v. [DOI] [PubMed] [Google Scholar]
  24. Persing D. H. Polymerase chain reaction: trenches to benches. J Clin Microbiol. 1991 Jul;29(7):1281–1285. doi: 10.1128/jcm.29.7.1281-1285.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Pikaart M. J., Villeponteau B. Suppression of PCR amplification by high levels of RNA. Biotechniques. 1993 Jan;14(1):24–25. [PubMed] [Google Scholar]
  26. Potgieter L. N., Brock K. V. Detection of bovine viral diarrhea virus by spot hybridization with probes prepared from cloned cDNA sequences. J Vet Diagn Invest. 1989 Jan;1(1):29–33. doi: 10.1177/104063878900100110. [DOI] [PubMed] [Google Scholar]
  27. Qi F., Ridpath J. F., Lewis T., Bolin S. R., Berry E. S. Analysis of the bovine viral diarrhea virus genome for possible cellular insertions. Virology. 1992 Jul;189(1):285–292. doi: 10.1016/0042-6822(92)90704-s. [DOI] [PubMed] [Google Scholar]
  28. Renard A., Guiot C., Schmetz D., Dagenais L., Pastoret P. P., Dina D., Martial J. A. Molecular cloning of bovine viral diarrhea viral sequences. DNA. 1985 Dec;4(6):429–438. doi: 10.1089/dna.1985.4.429. [DOI] [PubMed] [Google Scholar]
  29. Ridpath J. F., Bolin S. R. Hybridization analysis of genomic variability among isolates of bovine viral diarrhoea virus using cDNA probes. Mol Cell Probes. 1991 Aug;5(4):291–298. doi: 10.1016/0890-8508(91)90052-l. [DOI] [PubMed] [Google Scholar]
  30. Ridpath J. F., Bolin S. R., Katz J. Comparison of nucleic acid hybridization and nucleic acid amplification using conserved sequences from the 5' noncoding region for detection of bovine viral diarrhea virus. J Clin Microbiol. 1993 Apr;31(4):986–989. doi: 10.1128/jcm.31.4.986-989.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Schmitt B. J., Lopez O. J., Ridpath J. F., Galeota-Wheeler J., Osorio F. A. Evaluation of PCR for diagnosis of bovine viral diarrhea virus in tissue homogenates. J Vet Diagn Invest. 1994 Jan;6(1):44–47. doi: 10.1177/104063879400600109. [DOI] [PubMed] [Google Scholar]
  33. Sellner L. N., Coelen R. J., Mackenzie J. S. A one-tube, one manipulation RT-PCR reaction for detection of Ross River virus. J Virol Methods. 1992 Dec 1;40(3):255–263. doi: 10.1016/0166-0934(92)90084-q. [DOI] [PubMed] [Google Scholar]
  34. Wang R. F., Cao W. W., Johnson M. G. A simplified, single tube, single buffer system for RNA-PCR. Biotechniques. 1992 May;12(5):702–704. [PubMed] [Google Scholar]
  35. Ward P., Misra V. Detection of bovine viral diarrhea virus, using degenerate oligonucleotide primers and the polymerase chain reaction. Am J Vet Res. 1991 Aug;52(8):1231–1236. [PubMed] [Google Scholar]

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