Skip to main content
Journal of Clinical Microbiology logoLink to Journal of Clinical Microbiology
. 1995 Aug;33(8):2171–2175. doi: 10.1128/jcm.33.8.2171-2175.1995

Genetic diversity in clinical isolates of the dimorphic fungus Blastomyces dermatitidis detected by a PCR-based random amplified polymorphic DNA assay.

K E Yates-Siilata 1, D M Sander 1, E J Keath 1
PMCID: PMC228358  PMID: 7559971

Abstract

Blastomyces dermatitidis is a dimorphic fungus causing localized or systemic infection in areas where the organism is endemic in the central and southeastern United States. In this study, 19 independent isolates of B. dermatitidis from Little Rock, Ark., were grouped into three classes based on restriction fragment length polymorphism patterns in mitochondrial DNA with a heterologous probe from Histoplasma capsulatum. One large class of 15 isolates and two smaller classes (classes 2 and 3), each consisting of two isolates, were observed in BglII digests. Strain-specific arrays of PCR-amplified DNA products were obtained with arbitrarily selected primers (18 to 29 nucleotides long; G+C contents, 33 to 56%). In the large class 1 group, 13 isolates could be differentiated by the random amplified polymorphic DNA (RAPD) method with various primers. The two remaining class 1 isolates were obtained from the same patients and produced identical RAPD arrays. Dissimilar RAPD patterns were obtained from the smaller class 2 group but not from the class 3 isolates. Significant genetic diversity in clinical isolates of B. dermatitidis was observed; this may underscore a similar environmental diversification. Further application of the typing techniques may provide significant insight into the epidemiology of blastomycosis and aid in the assessment of specific virulence phenotypes.

Full Text

The Full Text of this article is available as a PDF (545.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Akopyanz N., Bukanov N. O., Westblom T. U., Berg D. E. PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori. Nucleic Acids Res. 1992 Dec 11;20(23):6221–6225. doi: 10.1093/nar/20.23.6221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Akopyanz N., Bukanov N. O., Westblom T. U., Kresovich S., Berg D. E. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res. 1992 Oct 11;20(19):5137–5142. doi: 10.1093/nar/20.19.5137. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bawdon R. E., Garrison R. G., Fina L. R. Deoxyribonucleic acid base composition of the yeastlike and mycelial phases of Histoplasma capsulatum and Blastomyces dermatitidis. J Bacteriol. 1972 Aug;111(2):593–596. doi: 10.1128/jb.111.2.593-596.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Bradsher R. W. Systemic fungal infections: diagnosis and treatment. I. Blastomycosis. Infect Dis Clin North Am. 1988 Dec;2(4):877–898. [PubMed] [Google Scholar]
  5. Butka B. J., Bennett S. R., Johnson A. C. Disseminated inoculation blastomycosis in a renal transplant recipient. Am Rev Respir Dis. 1984 Dec;130(6):1180–1183. doi: 10.1164/arrd.1984.130.6.1180. [DOI] [PubMed] [Google Scholar]
  6. Ehni W. Endogenous reactivation in blastomycosis. Am J Med. 1989 Jun;86(6 Pt 2):831–832. doi: 10.1016/0002-9343(89)90483-x. [DOI] [PubMed] [Google Scholar]
  7. Fraser V. J., Keath E. J., Powderly W. G. Two cases of blastomycosis from a common source: use of DNA restriction analysis to identify strains. J Infect Dis. 1991 Jun;163(6):1378–1381. doi: 10.1093/infdis/163.6.1378. [DOI] [PubMed] [Google Scholar]
  8. HARRIS J. S., SMITH J. G., HUMBERT W. C., CONANT N. F., SMITH D. T. North American blastomycosis in an epidemic area. Public Health Rep. 1957 Feb;72(2):95–100. [PMC free article] [PubMed] [Google Scholar]
  9. Kersulyte D., Woods J. P., Keath E. J., Goldman W. E., Berg D. E. Diversity among clinical isolates of Histoplasma capsulatum detected by polymerase chain reaction with arbitrary primers. J Bacteriol. 1992 Nov;174(22):7075–7079. doi: 10.1128/jb.174.22.7075-7079.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Kitchen M. S., Reiber C. D., Eastin G. B. An urban epidemic of North American blastomycosis. Am Rev Respir Dis. 1977 Jun;115(6):1063–1066. doi: 10.1164/arrd.1977.115.6.1063. [DOI] [PubMed] [Google Scholar]
  11. Klein B. S., Vergeront J. M., Weeks R. J., Kumar U. N., Mathai G., Varkey B., Kaufman L., Bradsher R. W., Stoebig J. F., Davis J. P. Isolation of Blastomyces dermatitidis in soil associated with a large outbreak of blastomycosis in Wisconsin. N Engl J Med. 1986 Feb 27;314(9):529–534. doi: 10.1056/NEJM198602273140901. [DOI] [PubMed] [Google Scholar]
  12. Magee B. B., D'Souza T. M., Magee P. T. Strain and species identification by restriction fragment length polymorphisms in the ribosomal DNA repeat of Candida species. J Bacteriol. 1987 Apr;169(4):1639–1643. doi: 10.1128/jb.169.4.1639-1643.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. McClelland M., Arensdorf H., Cheng R., Welsh J. Arbitrarily primed PCR fingerprints resolved on SSCP gels. Nucleic Acids Res. 1994 May 11;22(9):1770–1771. doi: 10.1093/nar/22.9.1770. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. McClelland M., Welsh J. DNA fingerprinting by arbitrarily primed PCR. PCR Methods Appl. 1994 Aug;4(1):S59–S65. doi: 10.1101/gr.4.1.s59. [DOI] [PubMed] [Google Scholar]
  15. McDonough E. S., Lewis A. L. Blastomyces dermatitidis: production of the sexual stage. Science. 1967 Apr 28;156(3774):528–529. doi: 10.1126/science.156.3774.528. [DOI] [PubMed] [Google Scholar]
  16. Pappas P. G., Pottage J. C., Powderly W. G., Fraser V. J., Stratton C. W., McKenzie S., Tapper M. L., Chmel H., Bonebrake F. C., Blum R. Blastomycosis in patients with the acquired immunodeficiency syndrome. Ann Intern Med. 1992 May 15;116(10):847–853. doi: 10.7326/0003-4819-116-10-847. [DOI] [PubMed] [Google Scholar]
  17. Powderly W. G., Robinson K., Keath E. J. Molecular typing of candida albicans isolated from oral lesions of HIV-infected individuals. AIDS. 1992 Jan;6(1):81–84. doi: 10.1097/00002030-199201000-00010. [DOI] [PubMed] [Google Scholar]
  18. Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
  19. Sarosi G. A., Hammerman K. J., Tosh F. E., Kronenberg R. S. Clinical features of acute pulmonary blastomycosis. N Engl J Med. 1974 Mar 7;290(10):540–543. doi: 10.1056/NEJM197403072901004. [DOI] [PubMed] [Google Scholar]
  20. Scherer S., Stevens D. A. A Candida albicans dispersed, repeated gene family and its epidemiologic applications. Proc Natl Acad Sci U S A. 1988 Mar;85(5):1452–1456. doi: 10.1073/pnas.85.5.1452. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  22. Spitzer E. D., Lasker B. A., Travis S. J., Kobayashi G. S., Medoff G. Use of mitochondrial and ribosomal DNA polymorphisms to classify clinical and soil isolates of Histoplasma capsulatum. Infect Immun. 1989 May;57(5):1409–1412. doi: 10.1128/iai.57.5.1409-1412.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Tosh F. E., Hammerman K. J., Weeks R. J., Sarosi G. A. A common source epidemic of North American blastomycosis. Am Rev Respir Dis. 1974 May;109(5):525–529. doi: 10.1164/arrd.1974.109.5.525. [DOI] [PubMed] [Google Scholar]
  24. Vincent R. D., Goewert R., Goldman W. E., Kobayashi G. S., Lambowitz A. M., Medoff G. Classification of Histoplasma capsulatum isolates by restriction fragment polymorphisms. J Bacteriol. 1986 Mar;165(3):813–818. doi: 10.1128/jb.165.3.813-818.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 1990 Dec 25;18(24):7213–7218. doi: 10.1093/nar/18.24.7213. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Welsh J., McClelland M. Genomic fingerprints produced by PCR with consensus tRNA gene primers. Nucleic Acids Res. 1991 Feb 25;19(4):861–866. doi: 10.1093/nar/19.4.861. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Williams J. G., Kubelik A. R., Livak K. J., Rafalski J. A., Tingey S. V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990 Nov 25;18(22):6531–6535. doi: 10.1093/nar/18.22.6531. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Woods J. P., Kersulyte D., Goldman W. E., Berg D. E. Fast DNA isolation from Histoplasma capsulatum: methodology for arbitrary primer polymerase chain reaction-based epidemiological and clinical studies. J Clin Microbiol. 1993 Feb;31(2):463–464. doi: 10.1128/jcm.31.2.463-464.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Journal of Clinical Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES