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. 1992 Sep 2;118(6):1297–1304. doi: 10.1083/jcb.118.6.1297

In vitro assembly of prenucleolar bodies in Xenopus egg extract

PMCID: PMC2289602  PMID: 1522108

Abstract

Nuclei assembled in Xenopus egg extract from purified DNA or chromatin resemble their natural counterparts in a number of structural and functional features. However, the most obvious structural element of normal interphase nuclei, the nucleolus, is absent from the in vitro reconstituted nuclei. By EM, cytological silver staining, and immunofluorescence microscopy employing antibodies directed against various nucleolar components we show that nuclei assembled in vitro contain numerous distinct aggregates that resemble prenucleolar bodies (PNBs) by several criteria. Formation of these PNB-like structures requires pore complex-mediated nuclear transport of proteins but is independent of the genetic content of the in vitro nuclei as well as transcriptional and translational events. Our data indicate that nuclei assembled in vitro are capable of initiating early steps of nucleologenesis but that the resulting PNBs are unable to fuse with each other, probably due to the absence of a functional nucleolus organizer. With appropriate modifications, this experimental system should be useful to define and analyze conditions promoting the site- specific assembly of PNBs into a coherent nucleolar body.

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Selected References

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  1. Benavente R., Rose K. M., Reimer G., Hügle-Dörr B., Scheer U. Inhibition of nucleolar reformation after microinjection of antibodies to RNA polymerase I into mitotic cells. J Cell Biol. 1987 Oct;105(4):1483–1491. doi: 10.1083/jcb.105.4.1483. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Biggiogera M., Fakan S., Kaufmann S. H., Black A., Shaper J. H., Busch H. Simultaneous immunoelectron microscopic visualization of protein B23 and C23 distribution in the HeLa cell nucleolus. J Histochem Cytochem. 1989 Sep;37(9):1371–1374. doi: 10.1177/37.9.2768807. [DOI] [PubMed] [Google Scholar]
  3. Birnboim H. C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 1979 Nov 24;7(6):1513–1523. doi: 10.1093/nar/7.6.1513. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Blin N., Stafford D. W. A general method for isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res. 1976 Sep;3(9):2303–2308. doi: 10.1093/nar/3.9.2303. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Blow J. J., Laskey R. A. Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs. Cell. 1986 Nov 21;47(4):577–587. doi: 10.1016/0092-8674(86)90622-7. [DOI] [PubMed] [Google Scholar]
  6. Caizergues-Ferrer M., Mariottini P., Curie C., Lapeyre B., Gas N., Amalric F., Amaldi F. Nucleolin from Xenopus laevis: cDNA cloning and expression during development. Genes Dev. 1989 Mar;3(3):324–333. doi: 10.1101/gad.3.3.324. [DOI] [PubMed] [Google Scholar]
  7. Caizergues-Ferrer M., Mathieu C., Mariottini P., Amalric F., Amaldi F. Developmental expression of fibrillarin and U3 snRNA in Xenopus laevis. Development. 1991 May;112(1):317–326. doi: 10.1242/dev.112.1.317. [DOI] [PubMed] [Google Scholar]
  8. Christensen M. E., Moloo J., Swischuk J. L., Schelling M. E. Characterization of the nucleolar protein, B-36, using monoclonal antibodies. Exp Cell Res. 1986 Sep;166(1):77–93. doi: 10.1016/0014-4827(86)90509-4. [DOI] [PubMed] [Google Scholar]
  9. Cox L. S., Laskey R. A. DNA replication occurs at discrete sites in pseudonuclei assembled from purified DNA in vitro. Cell. 1991 Jul 26;66(2):271–275. doi: 10.1016/0092-8674(91)90617-8. [DOI] [PubMed] [Google Scholar]
  10. Dabauvalle M. C., Loos K., Scheer U. Identification of a soluble precursor complex essential for nuclear pore assembly in vitro. Chromosoma. 1990 Dec;100(1):56–66. doi: 10.1007/BF00337603. [DOI] [PubMed] [Google Scholar]
  11. Fischer D., Weisenberger D., Scheer U. Assigning functions to nucleolar structures. Chromosoma. 1991 Dec;101(3):133–140. doi: 10.1007/BF00355363. [DOI] [PubMed] [Google Scholar]
  12. Hernandez-Verdun D., Bouteille M., Ege T., Ringertz N. R. Fine structure of nucleoli in micronucleated cells. Exp Cell Res. 1979 Dec;124(2):223–235. doi: 10.1016/0014-4827(79)90198-8. [DOI] [PubMed] [Google Scholar]
  13. Hernandez-Verdun D., Robert-Nicoud M., Geraud G., Masson C. Behaviour of nucleolar proteins in nuclei lacking ribosomal genes. A study by confocal laser scanning microscopy. J Cell Sci. 1991 Jan;98(Pt 1):99–105. doi: 10.1242/jcs.98.1.99. [DOI] [PubMed] [Google Scholar]
  14. Jansen R. P., Hurt E. C., Kern H., Lehtonen H., Carmo-Fonseca M., Lapeyre B., Tollervey D. Evolutionary conservation of the human nucleolar protein fibrillarin and its functional expression in yeast. J Cell Biol. 1991 May;113(4):715–729. doi: 10.1083/jcb.113.4.715. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Jeppesen C., Stebbins-Boaz B., Gerbi S. A. Nucleotide sequence determination and secondary structure of Xenopus U3 snRNA. Nucleic Acids Res. 1988 Mar 25;16(5):2127–2148. doi: 10.1093/nar/16.5.2127. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Jiménez-García L. F., Rothblum L. I., Busch H., Ochs R. L. Nucleologenesis: use of non-isotopic in situ hybridization and immunocytochemistry to compare the localization of rDNA and nucleolar proteins during mitosis. Biol Cell. 1989;65(3):239–246. doi: 10.1111/j.1768-322x.1989.tb00795.x. [DOI] [PubMed] [Google Scholar]
  17. Karpen G. H., Schaefer J. E., Laird C. D. A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation. Genes Dev. 1988 Dec;2(12B):1745–1763. doi: 10.1101/gad.2.12b.1745. [DOI] [PubMed] [Google Scholar]
  18. Karsenti E., Newport J., Hubble R., Kirschner M. Interconversion of metaphase and interphase microtubule arrays, as studied by the injection of centrosomes and nuclei into Xenopus eggs. J Cell Biol. 1984 May;98(5):1730–1745. doi: 10.1083/jcb.98.5.1730. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Labidi B., Frackowiak S., Hernandez-Verdun D. Identification and sorting of micronuclei containing individual chromosomes. Exp Cell Res. 1987 Dec;173(2):617–627. doi: 10.1016/0014-4827(87)90300-4. [DOI] [PubMed] [Google Scholar]
  20. Lapeyre B., Mariottini P., Mathieu C., Ferrer P., Amaldi F., Amalric F., Caizergues-Ferrer M. Molecular cloning of Xenopus fibrillarin, a conserved U3 small nuclear ribonucleoprotein recognized by antisera from humans with autoimmune disease. Mol Cell Biol. 1990 Jan;10(1):430–434. doi: 10.1128/mcb.10.1.430. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Laskey R. A., Leno G. H. Assembly of the cell nucleus. Trends Genet. 1990 Dec;6(12):406–410. doi: 10.1016/0168-9525(90)90301-l. [DOI] [PubMed] [Google Scholar]
  22. Lohka M. J., Masui Y. Formation in vitro of sperm pronuclei and mitotic chromosomes induced by amphibian ooplasmic components. Science. 1983 May 13;220(4598):719–721. doi: 10.1126/science.6601299. [DOI] [PubMed] [Google Scholar]
  23. Lohka M. J. The reconstitution of nuclear envelopes in cell-free extracts. Cell Biol Int Rep. 1988 Sep;12(9):833–848. doi: 10.1016/0309-1651(88)90091-4. [DOI] [PubMed] [Google Scholar]
  24. Luhrmann R., Appel B., Bringmann P., Rinke J., Reuter R., Rothe S., Bald R. Isolation and characterization of rabbit anti-m3 2,2,7G antibodies. Nucleic Acids Res. 1982 Nov 25;10(22):7103–7113. doi: 10.1093/nar/10.22.7103. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Muller M. T., Pfund W. P., Mehta V. B., Trask D. K. Eukaryotic type I topoisomerase is enriched in the nucleolus and catalytically active on ribosomal DNA. EMBO J. 1985 May;4(5):1237–1243. doi: 10.1002/j.1460-2075.1985.tb03766.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Newmeyer D. D., Finlay D. R., Forbes D. J. In vitro transport of a fluorescent nuclear protein and exclusion of non-nuclear proteins. J Cell Biol. 1986 Dec;103(6 Pt 1):2091–2102. doi: 10.1083/jcb.103.6.2091. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Newmeyer D. D., Forbes D. J. Nuclear import can be separated into distinct steps in vitro: nuclear pore binding and translocation. Cell. 1988 Mar 11;52(5):641–653. doi: 10.1016/0092-8674(88)90402-3. [DOI] [PubMed] [Google Scholar]
  28. Newmeyer D. D., Lucocq J. M., Bürglin T. R., De Robertis E. M. Assembly in vitro of nuclei active in nuclear protein transport: ATP is required for nucleoplasmin accumulation. EMBO J. 1986 Mar;5(3):501–510. doi: 10.1002/j.1460-2075.1986.tb04239.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Newport J. Nuclear reconstitution in vitro: stages of assembly around protein-free DNA. Cell. 1987 Jan 30;48(2):205–217. doi: 10.1016/0092-8674(87)90424-7. [DOI] [PubMed] [Google Scholar]
  30. Ochs R. L., Lischwe M. A., Shen E., Carroll R. E., Busch H. Nucleologenesis: composition and fate of prenucleolar bodies. Chromosoma. 1985;92(5):330–336. doi: 10.1007/BF00327463. [DOI] [PubMed] [Google Scholar]
  31. Ochs R. L., Lischwe M. A., Spohn W. H., Busch H. Fibrillarin: a new protein of the nucleolus identified by autoimmune sera. Biol Cell. 1985;54(2):123–133. doi: 10.1111/j.1768-322x.1985.tb00387.x. [DOI] [PubMed] [Google Scholar]
  32. Pfeifle J., Anderer F. A. Localization of phosphoprotein PP 105 in cell lines of various species. Biochem Biophys Res Commun. 1983 Oct 14;116(1):106–112. doi: 10.1016/0006-291x(83)90387-x. [DOI] [PubMed] [Google Scholar]
  33. Pfeifle J., Boller K., Anderer F. A. Phosphoprotein pp135 is an essential component of the nucleolus organizer region (NOR). Exp Cell Res. 1986 Jan;162(1):11–22. doi: 10.1016/0014-4827(86)90422-2. [DOI] [PubMed] [Google Scholar]
  34. Ploton D., Thiry M., Menager M., Lepoint A., Adnet J. J., Goessens G. Behaviour of nucleolus during mitosis. A comparative ultrastructural study of various cancerous cell lines using the Ag-NOR staining procedure. Chromosoma. 1987;95(2):95–107. doi: 10.1007/BF00332182. [DOI] [PubMed] [Google Scholar]
  35. Puvion-Dutilleul F., Bachellerie J. P., Puvion E. Nucleolar organization of HeLa cells as studied by in situ hybridization. Chromosoma. 1991 Jul;100(6):395–409. doi: 10.1007/BF00337518. [DOI] [PubMed] [Google Scholar]
  36. Reimer G., Pollard K. M., Penning C. A., Ochs R. L., Lischwe M. A., Busch H., Tan E. M. Monoclonal autoantibody from a (New Zealand black x New Zealand white)F1 mouse and some human scleroderma sera target an Mr 34,000 nucleolar protein of the U3 RNP particle. Arthritis Rheum. 1987 Jul;30(7):793–800. doi: 10.1002/art.1780300709. [DOI] [PubMed] [Google Scholar]
  37. Reimer G., Raska I., Scheer U., Tan E. M. Immunolocalization of 7-2-ribonucleoprotein in the granular component of the nucleolus. Exp Cell Res. 1988 May;176(1):117–128. doi: 10.1016/0014-4827(88)90126-7. [DOI] [PubMed] [Google Scholar]
  38. Reimer G., Raska I., Tan E. M., Scheer U. Human autoantibodies: probes for nucleolus structure and function. Virchows Arch B Cell Pathol Incl Mol Pathol. 1987;54(3):131–143. doi: 10.1007/BF02899205. [DOI] [PubMed] [Google Scholar]
  39. Reimer G., Rose K. M., Scheer U., Tan E. M. Autoantibody to RNA polymerase I in scleroderma sera. J Clin Invest. 1987 Jan;79(1):65–72. doi: 10.1172/JCI112809. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Reuter R., Appel B., Rinke J., Lührmann R. Localization and structure of snRNPs during mitosis. Immunofluorescent and biochemical studies. Exp Cell Res. 1985 Jul;159(1):63–79. doi: 10.1016/s0014-4827(85)80038-0. [DOI] [PubMed] [Google Scholar]
  41. Rose K. M., Szopa J., Han F. S., Cheng Y. C., Richter A., Scheer U. Association of DNA topoisomerase I and RNA polymerase I: a possible role for topoisomerase I in ribosomal gene transcription. Chromosoma. 1988;96(6):411–416. doi: 10.1007/BF00303034. [DOI] [PubMed] [Google Scholar]
  42. Rungger D., Achermann H., Crippa M. Transcription of spacer sequences in genes coding for ribosomal RNA in Xenopus cells. Proc Natl Acad Sci U S A. 1979 Aug;76(8):3957–3961. doi: 10.1073/pnas.76.8.3957. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Sato S. Cytological evidence on the ability of the nucleolus organizing regions to assemble pre-existing nucleolar material. Experientia. 1988 Mar 15;44(3):264–266. doi: 10.1007/BF01941733. [DOI] [PubMed] [Google Scholar]
  44. Scheer U., Benavente R. Functional and dynamic aspects of the mammalian nucleolus. Bioessays. 1990 Jan;12(1):14–21. doi: 10.1002/bies.950120104. [DOI] [PubMed] [Google Scholar]
  45. Scheer U., Messner K., Hazan R., Raska I., Hansmann P., Falk H., Spiess E., Franke W. W. High sensitivity immunolocalization of double and single-stranded DNA by a monoclonal antibody. Eur J Cell Biol. 1987 Jun;43(3):358–371. [PubMed] [Google Scholar]
  46. Scheer U., Rose K. M. Localization of RNA polymerase I in interphase cells and mitotic chromosomes by light and electron microscopic immunocytochemistry. Proc Natl Acad Sci U S A. 1984 Mar;81(5):1431–1435. doi: 10.1073/pnas.81.5.1431. [DOI] [PMC free article] [PubMed] [Google Scholar]
  47. Schmidt-Zachmann M. S., Hügle-Dörr B., Franke W. W. A constitutive nucleolar protein identified as a member of the nucleoplasmin family. EMBO J. 1987 Jul;6(7):1881–1890. doi: 10.1002/j.1460-2075.1987.tb02447.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Schmidt-Zachmann M. S., Hügle B., Scheer U., Franke W. W. Identification and localization of a novel nucleolar protein of high molecular weight by a monoclonal antibody. Exp Cell Res. 1984 Aug;153(2):327–346. doi: 10.1016/0014-4827(84)90604-9. [DOI] [PubMed] [Google Scholar]
  49. Sheehan M. A., Mills A. D., Sleeman A. M., Laskey R. A., Blow J. J. Steps in the assembly of replication-competent nuclei in a cell-free system from Xenopus eggs. J Cell Biol. 1988 Jan;106(1):1–12. doi: 10.1083/jcb.106.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Steele R. E., Thomas P. S., Reeder R. H. Anucleolate frog embryos contain ribosomal DNA sequences and a nucleolar antigen. Dev Biol. 1984 Apr;102(2):409–416. doi: 10.1016/0012-1606(84)90205-7. [DOI] [PubMed] [Google Scholar]
  51. Thiry M., Scheer U., Goessens G. Localization of nucleolar chromatin by immunocytochemistry and in situ hybridization at the electron microscopic level. Electron Microsc Rev. 1991;4(1):85–110. doi: 10.1016/0892-0354(91)90017-7. [DOI] [PubMed] [Google Scholar]

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