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Journal of Clinical Microbiology logoLink to Journal of Clinical Microbiology
. 1996 Jul;34(7):1617–1621. doi: 10.1128/jcm.34.7.1617-1621.1996

Molecular characterization of Mycobacterium paratuberculosis isolates from sheep, goats, and cattle by hybridization with a DNA probe to insertion element IS900.

R Bauerfeind 1, S Benazzi 1, R Weiss 1, T Schliesser 1, H Willems 1, G Baljer 1
PMCID: PMC229081  PMID: 8784556

Abstract

Mycobactin J-dependent mycobacterial isolates from sheep, goat, and cattle herds with Johne's disease in Morocco, South Africa, the United States, and Germany were tested for the repetitive insertion sequence IS900 of Mycobacterium paratuberculosis by PCR. The IS900 PCR target sequence was detected in 90 of 93 fecal culture isolates tested (96.8%). Restriction fragment length polymorphisms (RFLPs) and in vitro growth characteristics were studied in 46 of the IS900-positive isolates and in two bovine vaccine strains of M. paratuberculosis. Five different RFLP types were identified in PvuII digests of genomic DNA by Southern hybridization with a DNA probe specific for IS900. All isolates of M. paratuberculosis could be classified into two major clusters by their growth rates as well as the relatedness of their PvuII-RFLP hybridization patterns. All of the sheep isolates were classified into cluster I (extremely slow growth), while all cattle and goat isolates were members of cluster II (moderately slow growth). Different PvuII-RFLP patterns were detected in different sheep flocks from Morocco and South Africa. Our results demonstrate that genetically and phenotypically different strains of M. paratuberculosis were present in ruminant populations. The strains from sheep in Morocco and South Africa tested in the study appeared to belong to a unique group of M. paratuberculosis strains that might have adapted to this host species. The presence of several genetically distinct strains in different sheep flocks suggested that analysis of IS900-specific RFLP patterns may provide a useful tool for the epidemiologic investigation of ovine paratuberculosis outbreaks.

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Selected References

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  1. Ahrens P., Giese S. B., Klausen J., Inglis N. F. Two markers, IS901-IS902 and p40, identified by PCR and by using monoclonal antibodies in Mycobacterium avium strains. J Clin Microbiol. 1995 May;33(5):1049–1053. doi: 10.1128/jcm.33.5.1049-1053.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Benazzi S., Berrada J., Schliesser T. First report of paratuberculosis (Johne's disease) in sheep in Morocco. Zentralbl Veterinarmed B. 1995 Aug;42(6):339–344. doi: 10.1111/j.1439-0450.1995.tb00719.x. [DOI] [PubMed] [Google Scholar]
  3. Burnside D. M., Rowley B. O. Evaluation of an enzyme-linked immunosorbent assay for diagnosis of paratuberculosis in goats. Am J Vet Res. 1994 Apr;55(4):465–466. [PubMed] [Google Scholar]
  4. Chiodini R. J. Biochemical characteristics of various strains of Mycobacterium paratuberculosis. Am J Vet Res. 1986 Jul;47(7):1442–1445. [PubMed] [Google Scholar]
  5. Chiodini R. J. Characterization of Mycobacterium paratuberculosis and organisms of the Mycobacterium avium complex by restriction polymorphism of the rRNA gene region. J Clin Microbiol. 1990 Mar;28(3):489–494. doi: 10.1128/jcm.28.3.489-494.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Chiodini R. J., Van Kruiningen H. J. Characterization of Mycobacterium paratuberculosis of bovine, caprine, and ovine origin by gas-liquid chromatographic analysis of fatty acids in whole-cell extracts. Am J Vet Res. 1985 Sep;46(9):1980–1989. [PubMed] [Google Scholar]
  7. Chiodini R. J., Van Kruiningen H. J., Merkal R. S. Ruminant paratuberculosis (Johne's disease): the current status and future prospects. Cornell Vet. 1984 Jul;74(3):218–262. [PubMed] [Google Scholar]
  8. Collins D. M., Gabric D. M., De Lisle G. W. Identification of a repetitive DNA sequence specific to Mycobacterium paratuberculosis. FEMS Microbiol Lett. 1989 Jul 15;51(1):175–178. doi: 10.1016/0378-1097(89)90503-x. [DOI] [PubMed] [Google Scholar]
  9. Collins D. M., Gabric D. M., de Lisle G. W. Identification of two groups of Mycobacterium paratuberculosis strains by restriction endonuclease analysis and DNA hybridization. J Clin Microbiol. 1990 Jul;28(7):1591–1596. doi: 10.1128/jcm.28.7.1591-1596.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Collins D. M., Hilbink F., West D. M., Hosie B. D., Cooke M. M., de Lisle G. W. Investigation of Mycobacterium paratuberculosis in sheep by faecal culture, DNA characterisation and the polymerase chain reaction. Vet Rec. 1993 Dec 11;133(24):599–600. [PubMed] [Google Scholar]
  11. Collins D. M., Stephens D. M., de Lisle G. W. Comparison of polymerase chain reaction tests and faecal culture for detecting Mycobacterium paratuberculosis in bovine faeces. Vet Microbiol. 1993 Sep;36(3-4):289–299. doi: 10.1016/0378-1135(93)90095-o. [DOI] [PubMed] [Google Scholar]
  12. Collins D. M., de Lisle G. W. Restriction endonuclease analysis of various strains of Mycobacterium paratuberculosis isolated from cattle. Am J Vet Res. 1986 Oct;47(10):2226–2229. [PubMed] [Google Scholar]
  13. Collins P., Matthews P. R., McDiarmid A., Brown A. The pathogenicity of Mycobacterium avium and related mycobacteria for experimental animals. J Med Microbiol. 1983 Feb;16(1):27–35. doi: 10.1099/00222615-16-1-27. [DOI] [PubMed] [Google Scholar]
  14. Collins P., McDiarmid A., Thomas L. H., Matthews P. R. Comparison of the pathogenicity of Mycobacterium paratuberculosis and Mycobacterium spp isolated from the wood pigeon (Columba palumbus-L). J Comp Pathol. 1985 Oct;95(4):591–597. doi: 10.1016/0021-9975(85)90028-3. [DOI] [PubMed] [Google Scholar]
  15. De Lisle G. W., Collins D. M., Huchzermeyer H. F. Characterization of ovine strains of Mycobacterium paratuberculosis by restriction endonuclease analysis and DNA hybridization. Onderstepoort J Vet Res. 1992 Jun;59(2):163–165. [PubMed] [Google Scholar]
  16. Green E. P., Tizard M. L., Moss M. T., Thompson J., Winterbourne D. J., McFadden J. J., Hermon-Taylor J. Sequence and characteristics of IS900, an insertion element identified in a human Crohn's disease isolate of Mycobacterium paratuberculosis. Nucleic Acids Res. 1989 Nov 25;17(22):9063–9073. doi: 10.1093/nar/17.22.9063. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Hermon-Taylor J., Moss M., Tizard M., Malik Z., Sanderson J. Molecular biology of Crohn's disease mycobacteria. Baillieres Clin Gastroenterol. 1990 Mar;4(1):23–42. doi: 10.1016/0950-3528(90)90037-h. [DOI] [PubMed] [Google Scholar]
  18. Johnston W. S., MacLachlan G. K. Johne's disease in sheep. Vet Rec. 1986 Jul 19;119(3):75–75. doi: 10.1136/vr.119.3.75-a. [DOI] [PubMed] [Google Scholar]
  19. Juste R. A., Marco J. C., Sáez de Ocáriz C., Adúriz J. J. Comparison of different media for the isolation of small ruminant strains of Mycobacterium paratuberculosis. Vet Microbiol. 1991 Aug 30;28(4):385–390. doi: 10.1016/0378-1135(91)90073-o. [DOI] [PubMed] [Google Scholar]
  20. McFadden J. J., Butcher P. D., Chiodini R., Hermon-Taylor J. Crohn's disease-isolated mycobacteria are identical to Mycobacterium paratuberculosis, as determined by DNA probes that distinguish between mycobacterial species. J Clin Microbiol. 1987 May;25(5):796–801. doi: 10.1128/jcm.25.5.796-801.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. McFadden J. J., Butcher P. D., Thompson J., Chiodini R., Hermon-Taylor J. The use of DNA probes identifying restriction-fragment-length polymorphisms to examine the Mycobacterium avium complex. Mol Microbiol. 1987 Nov;1(3):283–291. doi: 10.1111/j.1365-2958.1987.tb01934.x. [DOI] [PubMed] [Google Scholar]
  22. Moss M. T., Malik Z. P., Tizard M. L., Green E. P., Sanderson J. D., Hermon-Taylor J. IS902, an insertion element of the chronic-enteritis-causing Mycobacterium avium subsp. silvaticum. J Gen Microbiol. 1992 Jan;138(1):139–145. doi: 10.1099/00221287-138-1-139. [DOI] [PubMed] [Google Scholar]
  23. Moss M. T., Sanderson J. D., Tizard M. L., Hermon-Taylor J., el-Zaatari F. A., Markesich D. C., Graham D. Y. Polymerase chain reaction detection of Mycobacterium paratuberculosis and Mycobacterium avium subsp silvaticum in long term cultures from Crohn's disease and control tissues. Gut. 1992 Sep;33(9):1209–1213. doi: 10.1136/gut.33.9.1209. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Power S. B., Haagsma J., Smyth D. P. Paratuberculosis in farmed red deer (Cervus elaphus) in Ireland. Vet Rec. 1993 Feb 27;132(9):213–216. doi: 10.1136/vr.132.9.213. [DOI] [PubMed] [Google Scholar]
  25. Saxegaard F., Baess I. Relationship between Mycobacterium avium, Mycobacterium paratuberculosis and "wood pigeon mycobacteria". Determinations by DNA-DNA hybridization. APMIS. 1988 Jan;96(1):37–42. [PubMed] [Google Scholar]
  26. Seaman J. T., Thompson D. R. Johne's disease in sheep. Aust Vet J. 1984 Jul;61(7):227–229. doi: 10.1111/j.1751-0813.1984.tb05995.x. [DOI] [PubMed] [Google Scholar]
  27. Sockett D. C., Carr D. J., Collins M. T. Evaluation of conventional and radiometric fecal culture and a commercial DNA probe for diagnosis of Mycobacterium paratuberculosis infections in cattle. Can J Vet Res. 1992 Apr;56(2):148–153. [PMC free article] [PubMed] [Google Scholar]
  28. Sweeney R. W., Divers T. J., Shaw D. P. Paratuberculosis in a ram. J Am Vet Med Assoc. 1984 Aug 15;185(4):444–445. [PubMed] [Google Scholar]
  29. Thorel M. F. Review of the occurrence of mycobactin dependence among mycobacteria species. Ann Rech Vet. 1984;15(3):405–409. [PubMed] [Google Scholar]
  30. Thoresen O. F., Olsaker I. Distribution and hybridization patterns of the insertion element IS900 in clinical isolates of Mycobacterium paratuberculosis. Vet Microbiol. 1994 Jun;40(3-4):293–303. doi: 10.1016/0378-1135(94)90118-x. [DOI] [PubMed] [Google Scholar]
  31. Weber A., Gürke R., Bauer K., Schreyer K. Bakteriologische Untersuchungen zum Vorkommen von Mycobacterium paratuberculosis in Kotproben von Zoowiederkäuern. Berl Munch Tierarztl Wochenschr. 1992 May 1;105(5):161–164. [PubMed] [Google Scholar]
  32. Whipple D. L., Kapke P. A., Andrews R. E., Jr Analysis of restriction endonuclease fragment patterns of DNA from Mycobacterium paratuberculosis. Vet Microbiol. 1989 Feb;19(2):189–194. doi: 10.1016/0378-1135(89)90084-9. [DOI] [PubMed] [Google Scholar]
  33. Whipple D. L., Le Febvre R. B., Andrews R. E., Jr, Thiermann A. B. Isolation and analysis of restriction endonuclease digestive patterns of chromosomal DNA from Mycobacterium paratuberculosis and other Mycobacterium species. J Clin Microbiol. 1987 Aug;25(8):1511–1515. doi: 10.1128/jcm.25.8.1511-1515.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Whipple D., Kapke P., Vary C. Identification of restriction fragment length polymorphisms in DNA from Mycobacterium paratuberculosis. J Clin Microbiol. 1990 Nov;28(11):2561–2564. doi: 10.1128/jcm.28.11.2561-2564.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]

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