Abstract
The supposedly first outbreak of hepatitis D virus (HDV) infection in Sweden occurred among intravenous drug addicts in the Malmö area in the mid-1970s. Stored sera from this outbreak were used for viral RNA extraction and analysis. By sequence comparisons, the HDV genomes from those Swedish patients fell into two separate clusters, within which the RNA sequences were closely related. These two HDV groups genetically resembled the French and US-1 isolates of genotype I, respectively, indicating that there had been at least two separate sources of HDV infection. The genetic alterations of the HDV RNA were investigated by sequence analysis of nine annually drawn serum samples from one patient and paired samples collected between 2 and more than 10 years apart from six patients with chronic HDV infection. Only mutational changes were observed, and no insertion or deletion appeared throughout the periods observed. It was found that the Swedish HDV isolates mutationally evolved at an average rate of 1.1 x 10(-3) substitutions per nucleotide per year over a long time course of chronic HDV infection, which is of the same magnitude as that of other RNA viruses.
Full Text
The Full Text of this article is available as a PDF (222.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bensabath G., Hadler S. C., Soares M. C., Fields H., Dias L. B., Popper H., Maynard J. E. Hepatitis delta virus infection and Labrea hepatitis. Prevalence and role in fulminant hepatitis in the Amazon Basin. JAMA. 1987 Jul 24;258(4):479–483. doi: 10.1001/jama.1987.03400040077025. [DOI] [PubMed] [Google Scholar]
- Buonagurio D. A., Nakada S., Parvin J. D., Krystal M., Palese P., Fitch W. M. Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene. Science. 1986 May 23;232(4753):980–982. doi: 10.1126/science.2939560. [DOI] [PubMed] [Google Scholar]
- Casey J. L., Brown T. L., Colan E. J., Wignall F. S., Gerin J. L. A genotype of hepatitis D virus that occurs in northern South America. Proc Natl Acad Sci U S A. 1993 Oct 1;90(19):9016–9020. doi: 10.1073/pnas.90.19.9016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chao Y. C., Chang M. F., Gust I., Lai M. M. Sequence conservation and divergence of hepatitis delta virus RNA. Virology. 1990 Oct;178(2):384–392. doi: 10.1016/0042-6822(90)90335-o. [DOI] [PubMed] [Google Scholar]
- Chao Y. C., Lee C. M., Tang H. S., Govindarajan S., Lai M. M. Molecular cloning and characterization of an isolate of hepatitis delta virus from Taiwan. Hepatology. 1991 Feb;13(2):345–352. [PubMed] [Google Scholar]
- Chao Y. C., Tang H. S., Hsu C. T. Evolution rate of hepatitis delta virus RNA isolated in Taiwan. J Med Virol. 1994 Aug;43(4):397–403. doi: 10.1002/jmv.1890430414. [DOI] [PubMed] [Google Scholar]
- Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem. 1987 Apr;162(1):156–159. doi: 10.1006/abio.1987.9999. [DOI] [PubMed] [Google Scholar]
- Gojobori T., Yokoyama S. Rates of evolution of the retroviral oncogene of Moloney murine sarcoma virus and of its cellular homologues. Proc Natl Acad Sci U S A. 1985 Jun;82(12):4198–4201. doi: 10.1073/pnas.82.12.4198. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hadler S. C., De Monzon M., Ponzetto A., Anzola E., Rivero D., Mondolfi A., Bracho A., Francis D. P., Gerber M. A., Thung S. Delta virus infection and severe hepatitis. An epidemic in the Yucpa Indians of Venezuela. Ann Intern Med. 1984 Mar;100(3):339–344. doi: 10.7326/0003-4819-100-3-339. [DOI] [PubMed] [Google Scholar]
- Hahn B. H., Shaw G. M., Taylor M. E., Redfield R. R., Markham P. D., Salahuddin S. Z., Wong-Staal F., Gallo R. C., Parks E. S., Parks W. P. Genetic variation in HTLV-III/LAV over time in patients with AIDS or at risk for AIDS. Science. 1986 Jun 20;232(4757):1548–1553. doi: 10.1126/science.3012778. [DOI] [PubMed] [Google Scholar]
- Hansson B. G., Moestrup T., Widell A., Nordenfelt E. Infection with delta agent in Sweden: introduction of a new hepatitis agent. J Infect Dis. 1982 Oct;146(4):472–478. doi: 10.1093/infdis/146.4.472. [DOI] [PubMed] [Google Scholar]
- Hoy J. F., Hansson B. G., Dimitrakakis M., Gust I., Lucas C. R. Delta agent infection in Melbourne. J Med Virol. 1984;13(4):339–345. doi: 10.1002/jmv.1890130404. [DOI] [PubMed] [Google Scholar]
- Imazeki F., Omata M., Ohto M. Complete nucleotide sequence of hepatitis delta virus RNA in Japan. Nucleic Acids Res. 1991 Oct 11;19(19):5439–5439. doi: 10.1093/nar/19.19.5439. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Imazeki F., Omata M., Ohto M. Heterogeneity and evolution rates of delta virus RNA sequences. J Virol. 1990 Nov;64(11):5594–5599. doi: 10.1128/jvi.64.11.5594-5599.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kos T., Molijn A., van Doorn L. J., van Belkum A., Dubbeld M., Schellekens H. Hepatitis delta virus cDNA sequence from an acutely HBV-infected chimpanzee: sequence conservation in experimental animals. J Med Virol. 1991 Aug;34(4):268–279. doi: 10.1002/jmv.1890340412. [DOI] [PubMed] [Google Scholar]
- Kuo M. Y., Goldberg J., Coates L., Mason W., Gerin J., Taylor J. Molecular cloning of hepatitis delta virus RNA from an infected woodchuck liver: sequence, structure, and applications. J Virol. 1988 Jun;62(6):1855–1861. doi: 10.1128/jvi.62.6.1855-1861.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lee C. M., Bih F. Y., Chao Y. C., Govindarajan S., Lai M. M. Evolution of hepatitis delta virus RNA during chronic infection. Virology. 1992 May;188(1):265–273. doi: 10.1016/0042-6822(92)90756-f. [DOI] [PubMed] [Google Scholar]
- Ljunggren K. E., Patarroyo M. E., Engle R., Purcell R. H., Gerin J. L. Viral hepatitis in Colombia: a study of the "hepatitis of the Sierra Nevada de Santa Marta". Hepatology. 1985 Mar-Apr;5(2):299–304. doi: 10.1002/hep.1840050225. [DOI] [PubMed] [Google Scholar]
- Makino S., Chang M. F., Shieh C. K., Kamahora T., Vannier D. M., Govindarajan S., Lai M. M. Molecular cloning and sequencing of a human hepatitis delta (delta) virus RNA. Nature. 1987 Sep 24;329(6137):343–346. doi: 10.1038/329343a0. [DOI] [PubMed] [Google Scholar]
- Ogata N., Alter H. J., Miller R. H., Purcell R. H. Nucleotide sequence and mutation rate of the H strain of hepatitis C virus. Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3392–3396. doi: 10.1073/pnas.88.8.3392. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Okamoto H., Imai M., Kametani M., Nakamura T., Mayumi M. Genomic heterogeneity of hepatitis B virus in a 54-year-old woman who contracted the infection through materno-fetal transmission. Jpn J Exp Med. 1987 Aug;57(4):231–236. [PubMed] [Google Scholar]
- Rizzetto M., Canese M. G., Aricò S., Crivelli O., Trepo C., Bonino F., Verme G. Immunofluorescence detection of new antigen-antibody system (delta/anti-delta) associated to hepatitis B virus in liver and in serum of HBsAg carriers. Gut. 1977 Dec;18(12):997–1003. doi: 10.1136/gut.18.12.997. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rizzetto M., Canese M. G., Gerin J. L., London W. T., Sly D. L., Purcell R. H. Transmission of the hepatitis B virus-associated delta antigen to chimpanzees. J Infect Dis. 1980 May;141(5):590–602. doi: 10.1093/infdis/141.5.590. [DOI] [PubMed] [Google Scholar]
- Rizzetto M., Hoyer B., Canese M. G., Shih J. W., Purcell R. H., Gerin J. L. delta Agent: association of delta antigen with hepatitis B surface antigen and RNA in serum of delta-infected chimpanzees. Proc Natl Acad Sci U S A. 1980 Oct;77(10):6124–6128. doi: 10.1073/pnas.77.10.6124. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rizzetto M. The delta agent. Hepatology. 1983 Sep-Oct;3(5):729–737. doi: 10.1002/hep.1840030518. [DOI] [PubMed] [Google Scholar]
- Saldanha J. A., Thomas H. C., Monjardino J. P. Cloning and sequencing of RNA of hepatitis delta virus isolated from human serum. J Gen Virol. 1990 Jul;71(Pt 7):1603–1606. doi: 10.1099/0022-1317-71-7-1603. [DOI] [PubMed] [Google Scholar]
- Siebke J. C., von der Lippe B., Hansson B. G., Nordenfelt E., Degré M. Prevalence and clinical effects of delta agent. Infections in Norwegian population subgroups. Scand J Infect Dis. 1986;18(1):33–36. doi: 10.3109/00365548609032303. [DOI] [PubMed] [Google Scholar]
- Wang K. S., Choo Q. L., Weiner A. J., Ou J. H., Najarian R. C., Thayer R. M., Mullenbach G. T., Denniston K. J., Gerin J. L., Houghton M. Structure, sequence and expression of the hepatitis delta (delta) viral genome. Nature. 1986 Oct 9;323(6088):508–514. doi: 10.1038/323508a0. [DOI] [PubMed] [Google Scholar]
