Abstract
A randomly amplified polymorphic DNA (RAPD) analysis was performed for the molecular typing of Mycobacterium avium strains. This method was applied to epidemiologically unrelated M. avium strains isolated from the blood of 10 different AIDS patients and to strains that were considered epidemiologically related, as they had been isolated from the same patient but from different body locations (4 patients, 10 strains). Three oligonucleotide primers among the six tested were found to generate RAPD profiles with DNA from all M. avium strains and to successfully type them. This method for the typing of M. avium strains is rapid and easy to perform.
Full Text
The Full Text of this article is available as a PDF (995.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Arbeit R. D., Slutsky A., Barber T. W., Maslow J. N., Niemczyk S., Falkinham J. O., 3rd, O'Connor G. T., von Reyn C. F. Genetic diversity among strains of Mycobacterium avium causing monoclonal and polyclonal bacteremia in patients with AIDS. J Infect Dis. 1993 Jun;167(6):1384–1390. doi: 10.1093/infdis/167.6.1384. [DOI] [PubMed] [Google Scholar]
- Guerrero C., Bernasconi C., Burki D., Bodmer T., Telenti A. A novel insertion element from Mycobacterium avium, IS1245, is a specific target for analysis of strain relatedness. J Clin Microbiol. 1995 Feb;33(2):304–307. doi: 10.1128/jcm.33.2.304-307.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hampson S. J., Portaels F., Thompson J., Green E. P., Moss M. T., Hermon-Taylor J., McFadden J. J. DNA probes demonstrate a single highly conserved strain of Mycobacterium avium infecting AIDS patients. Lancet. 1989 Jan 14;1(8629):65–68. doi: 10.1016/s0140-6736(89)91427-x. [DOI] [PubMed] [Google Scholar]
- Inderlied C. B., Kemper C. A., Bermudez L. E. The Mycobacterium avium complex. Clin Microbiol Rev. 1993 Jul;6(3):266–310. doi: 10.1128/cmr.6.3.266. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Linton C. J., Jalal H., Leeming J. P., Millar M. R. Rapid discrimination of Mycobacterium tuberculosis strains by random amplified polymorphic DNA analysis. J Clin Microbiol. 1994 Sep;32(9):2169–2174. doi: 10.1128/jcm.32.9.2169-2174.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matsiota-Bernard P., Thierry D., Guesdon J. L., Nauciel C. Molecular epidemiology of Legionella pneumophila serogroup 1 by ribotyping with a non-radioactive probe and PCR fingerprinting. FEMS Immunol Med Microbiol. 1994 Jun;9(1):23–27. doi: 10.1111/j.1574-695X.1994.tb00469.x. [DOI] [PubMed] [Google Scholar]
- Mazurek G. H., Hartman S., Zhang Y., Brown B. A., Hector J. S., Murphy D., Wallace R. J., Jr Large DNA restriction fragment polymorphism in the Mycobacterium avium-M. intracellulare complex: a potential epidemiologic tool. J Clin Microbiol. 1993 Feb;31(2):390–394. doi: 10.1128/jcm.31.2.390-394.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nightingale S. D., Byrd L. T., Southern P. M., Jockusch J. D., Cal S. X., Wynne B. A. Incidence of Mycobacterium avium-intracellulare complex bacteremia in human immunodeficiency virus-positive patients. J Infect Dis. 1992 Jun;165(6):1082–1085. doi: 10.1093/infdis/165.6.1082. [DOI] [PubMed] [Google Scholar]
- Penner G. A., Bush A., Wise R., Kim W., Domier L., Kasha K., Laroche A., Scoles G., Molnar S. J., Fedak G. Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Methods Appl. 1993 May;2(4):341–345. doi: 10.1101/gr.2.4.341. [DOI] [PubMed] [Google Scholar]
- Picardeau M., Vincent V. Typing of Mycobacterium avium isolates by PCR. J Clin Microbiol. 1996 Feb;34(2):389–392. doi: 10.1128/jcm.34.2.389-392.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roiz M. P., Palenque E., Guerrero C., Garcia M. J. Use of restriction fragment length polymorphism as a genetic marker for typing Mycobacterium avium strains. J Clin Microbiol. 1995 May;33(5):1389–1391. doi: 10.1128/jcm.33.5.1389-1391.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ross B. C., Dwyer B. Rapid, simple method for typing isolates of Mycobacterium tuberculosis by using the polymerase chain reaction. J Clin Microbiol. 1993 Feb;31(2):329–334. doi: 10.1128/jcm.31.2.329-334.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schierwater B., Ender A. Different thermostable DNA polymerases may amplify different RAPD products. Nucleic Acids Res. 1993 Sep 25;21(19):4647–4648. doi: 10.1093/nar/21.19.4647. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Slutsky A. M., Arbeit R. D., Barber T. W., Rich J., von Reyn C. F., Pieciak W., Barlow M. A., Maslow J. N. Polyclonal infections due to Mycobacterium avium complex in patients with AIDS detected by pulsed-field gel electrophoresis of sequential clinical isolates. J Clin Microbiol. 1994 Jul;32(7):1773–1778. doi: 10.1128/jcm.32.7.1773-1778.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Starnbach M. N., Falkow S., Tompkins L. S. Species-specific detection of Legionella pneumophila in water by DNA amplification and hybridization. J Clin Microbiol. 1989 Jun;27(6):1257–1261. doi: 10.1128/jcm.27.6.1257-1261.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thierry D., Brisson-Noël A., Vincent-Lévy-Frébault V., Nguyen S., Guesdon J. L., Gicquel B. Characterization of a Mycobacterium tuberculosis insertion sequence, IS6110, and its application in diagnosis. J Clin Microbiol. 1990 Dec;28(12):2668–2673. doi: 10.1128/jcm.28.12.2668-2673.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thierry D., Vincent V., Clément F., Guesdon J. L. Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis. J Clin Microbiol. 1993 May;31(5):1048–1054. doi: 10.1128/jcm.31.5.1048-1054.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tsang A. Y., Denner J. C., Brennan P. J., McClatchy J. K. Clinical and epidemiological importance of typing of Mycobacterium avium complex isolates. J Clin Microbiol. 1992 Feb;30(2):479–484. doi: 10.1128/jcm.30.2.479-484.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yakrus M. A., Reeves M. W., Hunter S. B. Characterization of isolates of Mycobacterium avium serotypes 4 and 8 from patients with AIDS by multilocus enzyme electrophoresis. J Clin Microbiol. 1992 Jun;30(6):1474–1478. doi: 10.1128/jcm.30.6.1474-1478.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
- von Reyn C. F., Maslow J. N., Barber T. W., Falkinham J. O., 3rd, Arbeit R. D. Persistent colonisation of potable water as a source of Mycobacterium avium infection in AIDS. Lancet. 1994 May 7;343(8906):1137–1141. doi: 10.1016/s0140-6736(94)90239-9. [DOI] [PubMed] [Google Scholar]