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. 1997 Dec;71(12):9849–9854. doi: 10.1128/jvi.71.12.9849-9854.1997

Rescue of synthetic minireplicons establishes the absence of the NS1 and NS2 genes from avian pneumovirus.

J S Randhawa 1, A C Marriott 1, C R Pringle 1, A J Easton 1
PMCID: PMC230303  PMID: 9371659

Abstract

We have determined the nucleotide sequences of the regions 3' and 5' proximal to the avian pneumovirus (APV) N and L genes, respectively. These sequences were used in the construction of a synthetic minireplicon construct in which the chloramphenicol acetyltransferase (CAT) reporter gene was flanked at its 3' end with the APV leader together with the APV N gene start signal and at its 5' end with the APV L gene end signal and the genome trailer region. The ability of T7 RNA polymerase runoff transcripts to direct the replication and expression of the CAT reporter gene in APV-infected cells demonstrated the ability of the putative leader and trailer regions to direct genome replication and gene expression. Furthermore, this confirms the absence of the NS1 and NS2 gene analogs within the APV genome. We were able to detect the expression of CAT protein from cells that had been infected with supernatants from the initially infected and transfected cells. These results have identified the cis-acting sequences of APV responsible for viral replication, gene expression, and packaging into virus-like particles.

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Selected References

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  1. Baron M. D., Barrett T. Rescue of rinderpest virus from cloned cDNA. J Virol. 1997 Feb;71(2):1265–1271. doi: 10.1128/jvi.71.2.1265-1271.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Berthiaume L., Joncas J., Pavilanis V. Comparative structure, morphogenesis and biological characteristics of the respiratory syncytial (RS) virus and the pneumonia virus of mice (PVM). Arch Gesamte Virusforsch. 1974;45(1-2):39–51. doi: 10.1007/BF01240540. [DOI] [PubMed] [Google Scholar]
  3. Calain P., Roux L. The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA. J Virol. 1993 Aug;67(8):4822–4830. doi: 10.1128/jvi.67.8.4822-4830.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Cavanagh D., Barrett T. Pneumovirus-like characteristics of the mRNA and proteins of turkey rhinotracheitis virus. Virus Res. 1988 Oct;11(3):241–256. doi: 10.1016/0168-1702(88)90086-X. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Chambers P., Pringle C. R., Easton A. J. Genes 1 and 2 of pneumonia virus of mice encode proteins which have little homology with the 1C and 1B proteins of human respiratory syncytial virus. J Gen Virol. 1991 Oct;72(Pt 10):2545–2549. doi: 10.1099/0022-1317-72-10-2545. [DOI] [PubMed] [Google Scholar]
  6. Collins M. S., Gough R. E. Characterization of a virus associated with turkey rhinotracheitis. J Gen Virol. 1988 Apr;69(Pt 4):909–916. doi: 10.1099/0022-1317-69-4-909. [DOI] [PubMed] [Google Scholar]
  7. Collins M. S., Gough R. E., Lister S. A., Chettle N., Eddy R. Further characterisation of a virus associated with turkey rhinotracheitis. Vet Rec. 1986 Dec 13;119(24):606–606. [PubMed] [Google Scholar]
  8. Collins P. L., Dickens L. E., Buckler-White A., Olmsted R. A., Spriggs M. K., Camargo E., Coelingh K. V. Nucleotide sequences for the gene junctions of human respiratory syncytial virus reveal distinctive features of intergenic structure and gene order. Proc Natl Acad Sci U S A. 1986 Jul;83(13):4594–4598. doi: 10.1073/pnas.83.13.4594. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Collins P. L., Hill M. G., Cristina J., Grosfeld H. Transcription elongation factor of respiratory syncytial virus, a nonsegmented negative-strand RNA virus. Proc Natl Acad Sci U S A. 1996 Jan 9;93(1):81–85. doi: 10.1073/pnas.93.1.81. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Collins P. L., Hill M. G., Johnson P. R. The two open reading frames of the 22K mRNA of human respiratory syncytial virus: sequence comparison of antigenic subgroups A and B and expression in vitro. J Gen Virol. 1990 Dec;71(Pt 12):3015–3020. doi: 10.1099/0022-1317-71-12-3015. [DOI] [PubMed] [Google Scholar]
  11. Collins P. L., Mink M. A., Stec D. S. Rescue of synthetic analogs of respiratory syncytial virus genomic RNA and effect of truncations and mutations on the expression of a foreign reporter gene. Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9663–9667. doi: 10.1073/pnas.88.21.9663. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. De B. P., Banerjee A. K. Rescue of synthetic analogs of genome RNA of human parainfluenza virus type 3. Virology. 1993 Sep;196(1):344–348. doi: 10.1006/viro.1993.1486. [DOI] [PubMed] [Google Scholar]
  13. Dimock K., Collins P. L. Rescue of synthetic analogs of genomic RNA and replicative-intermediate RNA of human parainfluenza virus type 3. J Virol. 1993 May;67(5):2772–2778. doi: 10.1128/jvi.67.5.2772-2778.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Kato A., Sakai Y., Shioda T., Kondo T., Nakanishi M., Nagai Y. Initiation of Sendai virus multiplication from transfected cDNA or RNA with negative or positive sense. Genes Cells. 1996 Jun;1(6):569–579. doi: 10.1046/j.1365-2443.1996.d01-261.x. [DOI] [PubMed] [Google Scholar]
  15. Kozak M. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell. 1986 Jan 31;44(2):283–292. doi: 10.1016/0092-8674(86)90762-2. [DOI] [PubMed] [Google Scholar]
  16. Kuo L., Grosfeld H., Cristina J., Hill M. G., Collins P. L. Effects of mutations in the gene-start and gene-end sequence motifs on transcription of monocistronic and dicistronic minigenomes of respiratory syncytial virus. J Virol. 1996 Oct;70(10):6892–6901. doi: 10.1128/jvi.70.10.6892-6901.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Li J., Ling R., Randhawa J. S., Shaw K., Davis P. J., Juhasz K., Pringle C. R., Easton A. J., Cavanagh D. Sequence of the nucleocapsid protein gene of subgroup A and B avian pneumoviruses. Virus Res. 1996 Apr;41(2):185–191. doi: 10.1016/0168-1702(96)01288-9. [DOI] [PubMed] [Google Scholar]
  18. Ling R., Davis P. J., Yu Q., Wood C. M., Pringle C. R., Cavanagh D., Easton A. J. Sequence and in vitro expression of the phosphoprotein gene of avian pneumovirus. Virus Res. 1995 May;36(2-3):247–257. doi: 10.1016/0168-1702(95)00008-E. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Ling R., Easton A. J., Pringle C. R. Sequence analysis of the 22K, SH and G genes of turkey rhinotracheitis virus and their intergenic regions reveals a gene order different from that of other pneumoviruses. J Gen Virol. 1992 Jul;73(Pt 7):1709–1715. doi: 10.1099/0022-1317-73-7-1709. [DOI] [PubMed] [Google Scholar]
  20. Ling R., Pringle C. R. Turkey rhinotracheitis virus: in vivo and in vitro polypeptide synthesis. J Gen Virol. 1988 Apr;69(Pt 4):917–923. doi: 10.1099/0022-1317-69-4-917. [DOI] [PubMed] [Google Scholar]
  21. Mink M. A., Stec D. S., Collins P. L. Nucleotide sequences of the 3' leader and 5' trailer regions of human respiratory syncytial virus genomic RNA. Virology. 1991 Dec;185(2):615–624. doi: 10.1016/0042-6822(91)90532-g. [DOI] [PubMed] [Google Scholar]
  22. Park K. H., Huang T., Correia F. F., Krystal M. Rescue of a foreign gene by Sendai virus. Proc Natl Acad Sci U S A. 1991 Jul 1;88(13):5537–5541. doi: 10.1073/pnas.88.13.5537. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Pattnaik A. K., Ball L. A., LeGrone A. W., Wertz G. W. Infectious defective interfering particles of VSV from transcripts of a cDNA clone. Cell. 1992 Jun 12;69(6):1011–1020. doi: 10.1016/0092-8674(92)90619-n. [DOI] [PubMed] [Google Scholar]
  24. Pringle C. R. Virus taxonomy 1996 - a bulletin from the Xth International Congress of Virology in Jerusalem. Arch Virol. 1996;141(11):2251–2256. doi: 10.1007/BF01718231. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Randhawa J. S., Pringle C. R., Easton A. J. Nucleotide sequence of the matrix protein gene of a subgroup B avian pneumovirus. Virus Genes. 1996;12(2):179–183. doi: 10.1007/BF00572956. [DOI] [PubMed] [Google Scholar]
  26. Randhawa J. S., Wilson S. D., Tolley K. P., Cavanagh D., Pringle C. R., Easton A. J. Nucleotide sequence of the gene encoding the viral polymerase of avian pneumovirus. J Gen Virol. 1996 Dec;77(Pt 12):3047–3051. doi: 10.1099/0022-1317-77-12-3047. [DOI] [PubMed] [Google Scholar]
  27. Samal S. K., Collins P. L. RNA replication by a respiratory syncytial virus RNA analog does not obey the rule of six and retains a nonviral trinucleotide extension at the leader end. J Virol. 1996 Aug;70(8):5075–5082. doi: 10.1128/jvi.70.8.5075-5082.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Sidhu M. S., Chan J., Kaelin K., Spielhofer P., Radecke F., Schneider H., Masurekar M., Dowling P. C., Billeter M. A., Udem S. A. Rescue of synthetic measles virus minireplicons: measles genomic termini direct efficient expression and propagation of a reporter gene. Virology. 1995 Apr 20;208(2):800–807. doi: 10.1006/viro.1995.1215. [DOI] [PubMed] [Google Scholar]
  29. Stillman E. A., Whitt M. A. Mutational analyses of the intergenic dinucleotide and the transcriptional start sequence of vesicular stomatitis virus (VSV) define sequences required for efficient termination and initiation of VSV transcripts. J Virol. 1997 Mar;71(3):2127–2137. doi: 10.1128/jvi.71.3.2127-2137.1997. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Tolley K. P., Marriott A. C., Simpson A., Plows D. J., Matthews D. A., Longhurst S. J., Evans J. E., Johnson J. L., Cane P. A., Randolph V. B. Identification of mutations contributing to the reduced virulence of a modified strain of respiratory syncytial virus. Vaccine. 1996 Dec;14(17-18):1637–1646. doi: 10.1016/s0264-410x(96)00136-3. [DOI] [PubMed] [Google Scholar]
  31. Yu Q., Davis P. J., Barrett T., Binns M. M., Boursnell M. E., Cavanagh D. Deduced amino acid sequence of the fusion glycoprotein of turkey rhinotracheitis virus has greater identity with that of human respiratory syncytial virus, a pneumovirus, than that of paramyxoviruses and morbilliviruses. J Gen Virol. 1991 Jan;72(Pt 1):75–81. doi: 10.1099/0022-1317-72-1-75. [DOI] [PubMed] [Google Scholar]
  32. Yu Q., Davis P. J., Brown T. D., Cavanagh D. Sequence and in vitro expression of the M2 gene of turkey rhinotracheitis pneumovirus. J Gen Virol. 1992 Jun;73(Pt 6):1355–1363. doi: 10.1099/0022-1317-73-6-1355. [DOI] [PubMed] [Google Scholar]
  33. Yu Q., Davis P. J., Li J., Cavanagh D. Cloning and sequencing of the matrix protein (M) gene of turkey rhinotracheitis virus reveal a gene order different from that of respiratory syncytial virus. Virology. 1992 Feb;186(2):426–434. doi: 10.1016/0042-6822(92)90007-C. [DOI] [PMC free article] [PubMed] [Google Scholar]

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