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. 1995 Dec;15(12):6895–6900. doi: 10.1128/mcb.15.12.6895

Six human RNA polymerase subunits functionally substitute for their yeast counterparts.

K McKune 1, P A Moore 1, M W Hull 1, N A Woychik 1
PMCID: PMC230944  PMID: 8524256

Abstract

To assess functional relatedness of individual components of the eukaryotic transcription apparatus, three human subunits (hsRPB5, hsRPB8, and hsRPB10) were tested for their ability to support yeast cell growth in the absence of their essential yeast homologs. Two of the three subunits, hsRPB8 and hsRPB10, supported normal yeast cell growth at moderate temperatures. A fourth human subunit, hsRPB9, is a homolog of the nonessential yeast subunit RPB9. Yeast cells lacking RPB9 are unable to grow at high and low temperatures and are defective in mRNA start site selection. We tested the ability of hsRPB9 to correct the growth and start site selection defect seen in the absence of RPB9. Expression of hsRPB9 on a high-copy-number plasmid, but not a low-copy-number plasmid, restored growth at high temperatures. Recombinant human hsRPB9 was also able to completely correct the start site selection defect seen at the CYC1 promoter in vitro as effectively as the yeast RPB9 subunit. Immunoprecipitation of the cell extracts from yeast cells containing either of the human subunits that function in place of their yeast counterparts in vivo suggested that they assemble with the complete set of yeast RNA polymerase II subunits. Overall, a total of six of the seven human subunits tested previously or in this study are able to substitute for their yeast counterparts in vivo, underscoring the remarkable similarities between the transcriptional machineries of lower and higher eukaryotes.

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Selected References

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  1. Acker J., Wintzerith M., Vigneron M., Kedinger C. Structure of the gene encoding the 14.5 kDa subunit of human RNA polymerase II. Nucleic Acids Res. 1993 Nov 25;21(23):5345–5350. doi: 10.1093/nar/21.23.5345. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Acker J., Wintzerith M., Vigneron M., Kédinger C. Primary structure of the second largest subunit of human RNA polymerase II (or B). J Mol Biol. 1992 Aug 20;226(4):1295–1299. doi: 10.1016/0022-2836(92)91071-v. [DOI] [PubMed] [Google Scholar]
  3. Adams M. D., Dubnick M., Kerlavage A. R., Moreno R., Kelley J. M., Utterback T. R., Nagle J. W., Fields C., Venter J. C. Sequence identification of 2,375 human brain genes. Nature. 1992 Feb 13;355(6361):632–634. doi: 10.1038/355632a0. [DOI] [PubMed] [Google Scholar]
  4. Adams M. D., Kelley J. M., Gocayne J. D., Dubnick M., Polymeropoulos M. H., Xiao H., Merril C. R., Wu A., Olde B., Moreno R. F. Complementary DNA sequencing: expressed sequence tags and human genome project. Science. 1991 Jun 21;252(5013):1651–1656. doi: 10.1126/science.2047873. [DOI] [PubMed] [Google Scholar]
  5. Boeke J. D., Trueheart J., Natsoulis G., Fink G. R. 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 1987;154:164–175. doi: 10.1016/0076-6879(87)54076-9. [DOI] [PubMed] [Google Scholar]
  6. Buratowski S. The basics of basal transcription by RNA polymerase II. Cell. 1994 Apr 8;77(1):1–3. doi: 10.1016/0092-8674(94)90226-7. [DOI] [PubMed] [Google Scholar]
  7. Cheong J. H., Yi M., Lin Y., Murakami S. Human RPB5, a subunit shared by eukaryotic nuclear RNA polymerases, binds human hepatitis B virus X protein and may play a role in X transactivation. EMBO J. 1995 Jan 3;14(1):143–150. doi: 10.1002/j.1460-2075.1995.tb06984.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Freund E., McGuire P. M. Characterization of RNA polymerase type II from human term placenta. J Cell Physiol. 1986 Jun;127(3):432–438. doi: 10.1002/jcp.1041270312. [DOI] [PubMed] [Google Scholar]
  9. Furter-Graves E. M., Furter R., Hall B. D. SHI, a new yeast gene affecting the spacing between TATA and transcription initiation sites. Mol Cell Biol. 1991 Aug;11(8):4121–4127. doi: 10.1128/mcb.11.8.4121. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Furter-Graves E. M., Hall B. D., Furter R. Role of a small RNA pol II subunit in TATA to transcription start site spacing. Nucleic Acids Res. 1994 Nov 25;22(23):4932–4936. doi: 10.1093/nar/22.23.4932. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Hull M. W., McKune K., Woychik N. A. RNA polymerase II subunit RPB9 is required for accurate start site selection. Genes Dev. 1995 Feb 15;9(4):481–490. doi: 10.1101/gad.9.4.481. [DOI] [PubMed] [Google Scholar]
  12. Khazak V., Sadhale P. P., Woychik N. A., Brent R., Golemis E. A. Human RNA polymerase II subunit hsRPB7 functions in yeast and influences stress survival and cell morphology. Mol Biol Cell. 1995 Jul;6(7):759–775. doi: 10.1091/mbc.6.7.759. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Koleske A. J., Young R. A. The RNA polymerase II holoenzyme and its implications for gene regulation. Trends Biochem Sci. 1995 Mar;20(3):113–116. doi: 10.1016/s0968-0004(00)88977-x. [DOI] [PubMed] [Google Scholar]
  14. Kolodziej P. A., Young R. A. Epitope tagging and protein surveillance. Methods Enzymol. 1991;194:508–519. doi: 10.1016/0076-6879(91)94038-e. [DOI] [PubMed] [Google Scholar]
  15. Lue N. F., Flanagan P. M., Kelleher R. J., 3rd, Edwards A. M., Kornberg R. D. RNA polymerase II transcription in vitro. Methods Enzymol. 1991;194:545–550. doi: 10.1016/0076-6879(91)94041-a. [DOI] [PubMed] [Google Scholar]
  16. McKune K., Woychik N. A. Functional substitution of an essential yeast RNA polymerase subunit by a highly conserved mammalian counterpart. Mol Cell Biol. 1994 Jun;14(6):4155–4159. doi: 10.1128/mcb.14.6.4155. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. McKune K., Woychik N. A. Halobacterial S9 operon contains two genes encoding proteins homologous to subunits shared by eukaryotic RNA polymerases I, II, and III. J Bacteriol. 1994 Aug;176(15):4754–4756. doi: 10.1128/jb.176.15.4754-4756.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Nogi Y., Yano R., Dodd J., Carles C., Nomura M. Gene RRN4 in Saccharomyces cerevisiae encodes the A12.2 subunit of RNA polymerase I and is essential only at high temperatures. Mol Cell Biol. 1993 Jan;13(1):114–122. doi: 10.1128/mcb.13.1.114. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Pati U. K. Human RNA polymerase II subunit hRPB14 is homologous to yeast RNA polymerase I, II, and III subunits (AC19 and RPB11) and is similar to a portion of the bacterial RNA polymerase alpha subunit. Gene. 1994 Aug 5;145(2):289–292. doi: 10.1016/0378-1119(94)90022-1. [DOI] [PubMed] [Google Scholar]
  20. Pati U. K., Weissman S. M. Isolation and molecular characterization of a cDNA encoding the 23-kDa subunit of human RNA polymerase II. J Biol Chem. 1991 Jul 15;266(20):13468–13468. [PubMed] [Google Scholar]
  21. Pati U. K., Weissman S. M. The amino acid sequence of the human RNA polymerase II 33-kDa subunit hRPB 33 is highly conserved among eukaryotes. J Biol Chem. 1990 May 25;265(15):8400–8403. [PubMed] [Google Scholar]
  22. Thompson N. E., Aronson D. B., Burgess R. R. Purification of eukaryotic RNA polymerase II by immunoaffinity chromatography. Elution of active enzyme with protein stabilizing agents from a polyol-responsive monoclonal antibody. J Biol Chem. 1990 Apr 25;265(12):7069–7077. [PubMed] [Google Scholar]
  23. Tjian R., Maniatis T. Transcriptional activation: a complex puzzle with few easy pieces. Cell. 1994 Apr 8;77(1):5–8. doi: 10.1016/0092-8674(94)90227-5. [DOI] [PubMed] [Google Scholar]
  24. Wintzerith M., Acker J., Vicaire S., Vigneron M., Kedinger C. Complete sequence of the human RNA polymerase II largest subunit. Nucleic Acids Res. 1992 Feb 25;20(4):910–910. doi: 10.1093/nar/20.4.910. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Young R. A. RNA polymerase II. Annu Rev Biochem. 1991;60:689–715. doi: 10.1146/annurev.bi.60.070191.003353. [DOI] [PubMed] [Google Scholar]

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