Abstract
During the process of chromatin diminution in Ascaris suum (formerly named Ascaris lumbricoides var. suum), developmentally regulated chromosomal fragmentation and new telomere addition occur within specific chromosomal breakage regions (CBRs). The DNA sequences flanking one of these CBRs (CBR-1) were analyzed, and two protein-encoding genes were found on either side. The noneliminated gene, agp-1, whose AUG start codon is located within approximately 2 kb of the boundary of CBR-1, encodes a putative GTP-binding protein which is structurally related to eukaryotic and prokaryotic elongation factors. Northern (RNA) blot analyses revealed that transcripts of this gene are present at all developmental stages, suggesting that the massive chromosomal rearrangements associated with the process of chromatin diminution have no influence on agp-1 expression. This demonstrates that addition of new telomeres in CBR-1 does not result in a telomeric position effect, a phenomenon previously described in Saccharomyces cerevisiae.
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- An G., Friesen J. D. The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli. Gene. 1980 Dec;12(1-2):33–39. doi: 10.1016/0378-1119(80)90013-x. [DOI] [PubMed] [Google Scholar]
- Aparicio O. M., Gottschling D. E. Overcoming telomeric silencing: a trans-activator competes to establish gene expression in a cell cycle-dependent way. Genes Dev. 1994 May 15;8(10):1133–1146. doi: 10.1101/gad.8.10.1133. [DOI] [PubMed] [Google Scholar]
- Baldauf S. L., Palmer J. D. Evolutionary transfer of the chloroplast tufA gene to the nucleus. Nature. 1990 Mar 15;344(6263):262–265. doi: 10.1038/344262a0. [DOI] [PubMed] [Google Scholar]
- Bayne R. A., Broccoli D., Taggart M. H., Thomson E. J., Farr C. J., Cooke H. J. Sandwiching of a gene within 12 kb of a functional telomere and alpha satellite does not result in silencing. Hum Mol Genet. 1994 Apr;3(4):539–546. doi: 10.1093/hmg/3.4.539. [DOI] [PubMed] [Google Scholar]
- Bennett K. L., Ward S. Neither a germ line-specific nor several somatically expressed genes are lost or rearranged during embryonic chromatin diminution in the nematode Ascaris lumbricoides var. suum. Dev Biol. 1986 Nov;118(1):141–147. doi: 10.1016/0012-1606(86)90081-3. [DOI] [PubMed] [Google Scholar]
- Bourne H. R., Sanders D. A., McCormick F. The GTPase superfamily: conserved structure and molecular mechanism. Nature. 1991 Jan 10;349(6305):117–127. doi: 10.1038/349117a0. [DOI] [PubMed] [Google Scholar]
- Dever T. E., Glynias M. J., Merrick W. C. GTP-binding domain: three consensus sequence elements with distinct spacing. Proc Natl Acad Sci U S A. 1987 Apr;84(7):1814–1818. doi: 10.1073/pnas.84.7.1814. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Etter A., Aboutanos M., Tobler H., Müller F. Eliminated chromatin of Ascaris contains a gene that encodes a putative ribosomal protein. Proc Natl Acad Sci U S A. 1991 Mar 1;88(5):1593–1596. doi: 10.1073/pnas.88.5.1593. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Etter A., Bernard V., Kenzelmann M., Tobler H., Müller F. Ribosomal heterogeneity from chromatin diminution in Ascaris lumbricoides. Science. 1994 Aug 12;265(5174):954–956. doi: 10.1126/science.8052853. [DOI] [PubMed] [Google Scholar]
- Farr C. J., Stevanovic M., Thomson E. J., Goodfellow P. N., Cooke H. J. Telomere-associated chromosome fragmentation: applications in genome manipulation and analysis. Nat Genet. 1992 Dec;2(4):275–282. doi: 10.1038/ng1292-275. [DOI] [PubMed] [Google Scholar]
- Frohman M. A., Dush M. K., Martin G. R. Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci U S A. 1988 Dec;85(23):8998–9002. doi: 10.1073/pnas.85.23.8998. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gottschling D. E., Aparicio O. M., Billington B. L., Zakian V. A. Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription. Cell. 1990 Nov 16;63(4):751–762. doi: 10.1016/0092-8674(90)90141-z. [DOI] [PubMed] [Google Scholar]
- Müller E., Neuhaus H., Tobler H., Müller F. Unusual transcription termination of the ribosomal RNA genes in Ascaris lumbricoides. EMBO J. 1990 Sep;9(9):2849–2856. doi: 10.1002/j.1460-2075.1990.tb07474.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Müller F., Walker P., Aeby P., Neuhaus H., Felder H., Back E., Tobler H. Nucleotide sequence of satellite DNA contained in the eliminated genome of Ascaris lumbricoides. Nucleic Acids Res. 1982 Dec 11;10(23):7493–7510. doi: 10.1093/nar/10.23.7493. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Müller F., Wicky C., Spicher A., Tobler H. New telomere formation after developmentally regulated chromosomal breakage during the process of chromatin diminution in Ascaris lumbricoides. Cell. 1991 Nov 15;67(4):815–822. doi: 10.1016/0092-8674(91)90076-b. [DOI] [PubMed] [Google Scholar]
- Nagata S., Nagashima K., Tsunetsugu-Yokota Y., Fujimura K., Miyazaki M., Kaziro Y. Polypeptide chain elongation factor 1 alpha (EF-1 alpha) from yeast: nucleotide sequence of one of the two genes for EF-1 alpha from Saccharomyces cerevisiae. EMBO J. 1984 Aug;3(8):1825–1830. doi: 10.1002/j.1460-2075.1984.tb02053.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nilsen T. W. Trans-splicing of nematode premessenger RNA. Annu Rev Microbiol. 1993;47:413–440. doi: 10.1146/annurev.mi.47.100193.002213. [DOI] [PubMed] [Google Scholar]
- Nimmo E. R., Cranston G., Allshire R. C. Telomere-associated chromosome breakage in fission yeast results in variegated expression of adjacent genes. EMBO J. 1994 Aug 15;13(16):3801–3811. doi: 10.1002/j.1460-2075.1994.tb06691.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Renauld H., Aparicio O. M., Zierath P. D., Billington B. L., Chhablani S. K., Gottschling D. E. Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage. Genes Dev. 1993 Jul;7(7A):1133–1145. doi: 10.1101/gad.7.7a.1133. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Spicher A., Etter A., Bernard V., Tobler H., Müller F. Extremely stable transcripts may compensate for the elimination of the gene fert-1 from all Ascaris lumbricoides somatic cells. Dev Biol. 1994 Jul;164(1):72–86. doi: 10.1006/dbio.1994.1181. [DOI] [PubMed] [Google Scholar]
- Tobler H., Etter A., Müller F. Chromatin diminution in nematode development. Trends Genet. 1992 Dec;8(12):427–432. doi: 10.1016/0168-9525(92)90326-y. [DOI] [PubMed] [Google Scholar]
- Tommerup H., Dousmanis A., de Lange T. Unusual chromatin in human telomeres. Mol Cell Biol. 1994 Sep;14(9):5777–5785. doi: 10.1128/mcb.14.9.5777. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tuohy T. M., Thompson S., Gesteland R. F., Hughes D., Atkins J. F. The role of EF-Tu and other translation components in determining translocation step size. Biochim Biophys Acta. 1990 Aug 27;1050(1-3):274–278. doi: 10.1016/0167-4781(90)90180-a. [DOI] [PubMed] [Google Scholar]
- Van der Ploeg L. H., Gottesdiener K., Lee M. G. Antigenic variation in African trypanosomes. Trends Genet. 1992 Dec;8(12):452–457. doi: 10.1016/0168-9525(92)90330-7. [DOI] [PubMed] [Google Scholar]
