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. 1996 Dec;16(12):7109–7114. doi: 10.1128/mcb.16.12.7109

Inhibition of nascent-peptide release at translation termination.

J Cao 1, A P Geballe 1
PMCID: PMC231714  PMID: 8943366

Abstract

The transcript leader of the human cytomegalovirus (CMV) gpUL4 (gp48) gene contains a 22-codon upstream open reading frame (uORF2) that represses translation of the downstream cistron. Previous work demonstrated that ribosomes stall at the termination codon of uORF2 and, remarkably, that the coding information of uORF2 is required for both the translational repression and ribosomal stalling. We now provide evidence that the peptide product of uORF2 is synthesized and is retained in the ribosome in the form of a peptidyl-tRNA. Translation of the gp48 transcript leader in cell extracts produces the 2.4-kDa uORF2 peptide and a second product migrating with an apparent molecular mass of 20 kDa that represents the uORF2 peptide covalently linked to tRNA(Pro), the tRNA predicted to decode the carboxy-terminal codon of uORF2. The uORF2 peptidyl-tRNA is only detected after translation of RNAs containing uORF2 sequences that also inhibit downstream translation and cause ribosomal stalling. These data support a model in which the nascent uORF2 peptide blocks translation termination prior to hydrolysis of the peptidyl-tRNA bond. This blockade results in ribosomal stalling on the transcript leader which in turn impedes the access of ribosomes to the downstream cistron. This system illustrates that translation termination may be a critical step controlling expression of some eukaryotic genes.

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Selected References

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  1. Cao J., Geballe A. P. Coding sequence-dependent ribosomal arrest at termination of translation. Mol Cell Biol. 1996 Feb;16(2):603–608. doi: 10.1128/mcb.16.2.603. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Cao J., Geballe A. P. Translational inhibition by a human cytomegalovirus upstream open reading frame despite inefficient utilization of its AUG codon. J Virol. 1995 Feb;69(2):1030–1036. doi: 10.1128/jvi.69.2.1030-1036.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Chen J. K., Franke L. A., Hixson S. S., Zimmermann R. A. Photochemical cross-linking of tRNA1Arg to the 30S ribosomal subunit using aryl azide reagents attached to the anticodon loop. Biochemistry. 1985 Aug 27;24(18):4777–4784. doi: 10.1021/bi00339a011. [DOI] [PubMed] [Google Scholar]
  4. Degnin C. R., Schleiss M. R., Cao J., Geballe A. P. Translational inhibition mediated by a short upstream open reading frame in the human cytomegalovirus gpUL4 (gp48) transcript. J Virol. 1993 Sep;67(9):5514–5521. doi: 10.1128/jvi.67.9.5514-5521.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Geballe A. P., Gray M. K. Variable inhibition of cell-free translation by HIV-1 transcript leader sequences. Nucleic Acids Res. 1992 Aug 25;20(16):4291–4297. doi: 10.1093/nar/20.16.4291. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Gu Z., Harrod R., Rogers E. J., Lovett P. S. Anti-peptidyl transferase leader peptides of attenuation-regulated chloramphenicol-resistance genes. Proc Natl Acad Sci U S A. 1994 Jun 7;91(12):5612–5616. doi: 10.1073/pnas.91.12.5612. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Hackett P. B., Petersen R. B., Hensel C. H., Albericio F., Gunderson S. I., Palmenberg A. C., Barany G. Synthesis in vitro of a seven amino acid peptide encoded in the leader RNA of Rous sarcoma virus. J Mol Biol. 1986 Jul 5;190(1):45–57. doi: 10.1016/0022-2836(86)90074-4. [DOI] [PubMed] [Google Scholar]
  8. Hajjar A. M., Linial M. L. Modification of retroviral RNA by double-stranded RNA adenosine deaminase. J Virol. 1995 Sep;69(9):5878–5882. doi: 10.1128/jvi.69.9.5878-5882.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Harada F., Peters G. G., Dahlberg J. E. The primer tRNA for Moloney murine leukemia virus DNA synthesis. Nucleotide sequence and aminoacylation of tRNAPro. J Biol Chem. 1979 Nov 10;254(21):10979–10985. [PubMed] [Google Scholar]
  10. Hill J. R., Morris D. R. Cell-specific translational regulation of S-adenosylmethionine decarboxylase mRNA. Dependence on translation and coding capacity of the cis-acting upstream open reading frame. J Biol Chem. 1993 Jan 5;268(1):726–731. [PubMed] [Google Scholar]
  11. Hu J. C., Cote B. D., Lund E., Dahlberg J. E. Isolation and characterization of genomic mouse DNA clones containing sequences homologous to tRNAs and 5S rRNA. Nucleic Acids Res. 1983 Jul 25;11(14):4809–4821. doi: 10.1093/nar/11.14.4809. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Keith G., Desgrès J., Pochart P., Heyman T., Kuo K. C., Gehrke C. W. Eukaryotic tRNAs(Pro): primary structure of the anticodon loop; presence of 5-carbamoylmethyluridine or inosine as the first nucleoside of the anticodon. Biochim Biophys Acta. 1990 Jul 30;1049(3):255–260. doi: 10.1016/0167-4781(90)90095-j. [DOI] [PubMed] [Google Scholar]
  13. Khalili K., Brady J., Khoury G. Translational regulation of SV40 early mRNA defines a new viral protein. Cell. 1987 Feb 27;48(4):639–645. doi: 10.1016/0092-8674(87)90242-x. [DOI] [PubMed] [Google Scholar]
  14. Kozak M. An analysis of vertebrate mRNA sequences: intimations of translational control. J Cell Biol. 1991 Nov;115(4):887–903. doi: 10.1083/jcb.115.4.887. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Kozak M. The scanning model for translation: an update. J Cell Biol. 1989 Feb;108(2):229–241. doi: 10.1083/jcb.108.2.229. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Kudlicki W., Odom O. W., Merrill G., Kramer G., Hardesty B. Inhibition of the release factor-dependent termination reaction on ribosomes by DnaJ and the N-terminal peptide of rhodanese. J Bacteriol. 1995 Oct;177(19):5517–5522. doi: 10.1128/jb.177.19.5517-5522.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Lovett P. S., Rogers E. J. Ribosome regulation by the nascent peptide. Microbiol Rev. 1996 Jun;60(2):366–385. doi: 10.1128/mr.60.2.366-385.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Luo Z., Sachs M. S. Role of an upstream open reading frame in mediating arginine-specific translational control in Neurospora crassa. J Bacteriol. 1996 Apr;178(8):2172–2177. doi: 10.1128/jb.178.8.2172-2177.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Ogg S. C., Walter P. SRP samples nascent chains for the presence of signal sequences by interacting with ribosomes at a discrete step during translation elongation. Cell. 1995 Jun 30;81(7):1075–1084. doi: 10.1016/s0092-8674(05)80012-1. [DOI] [PubMed] [Google Scholar]
  20. Parola A. L., Kobilka B. K. The peptide product of a 5' leader cistron in the beta 2 adrenergic receptor mRNA inhibits receptor synthesis. J Biol Chem. 1994 Feb 11;269(6):4497–4505. [PubMed] [Google Scholar]
  21. Schleiss M. R., Degnin C. R., Geballe A. P. Translational control of human cytomegalovirus gp48 expression. J Virol. 1991 Dec;65(12):6782–6789. doi: 10.1128/jvi.65.12.6782-6789.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Schägger H., von Jagow G. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem. 1987 Nov 1;166(2):368–379. doi: 10.1016/0003-2697(87)90587-2. [DOI] [PubMed] [Google Scholar]
  23. Sekiya T., Nishizawa R., Matsuda K., Taya Y., Nishimura S. A rat tRNA gene cluster containing the genes for tRNAPro and tRNALys. Analysis of nucleotide sequences of the genes and the surrounding regions. Nucleic Acids Res. 1982 Oct 25;10(20):6411–6419. doi: 10.1093/nar/10.20.6411. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Tam J. P. Synthetic peptide vaccine design: synthesis and properties of a high-density multiple antigenic peptide system. Proc Natl Acad Sci U S A. 1988 Aug;85(15):5409–5413. doi: 10.1073/pnas.85.15.5409. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Weill D., Heyman T. Nucleotide sequence of two proline tRNA (AGG and CGG) genes from chicken. Nucleic Acids Res. 1990 Oct 25;18(20):6134–6134. doi: 10.1093/nar/18.20.6134. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Werner M., Feller A., Messenguy F., Piérard A. The leader peptide of yeast gene CPA1 is essential for the translational repression of its expression. Cell. 1987 Jun 19;49(6):805–813. doi: 10.1016/0092-8674(87)90618-0. [DOI] [PubMed] [Google Scholar]
  27. Wolin S. L., Walter P. Ribosome pausing and stacking during translation of a eukaryotic mRNA. EMBO J. 1988 Nov;7(11):3559–3569. doi: 10.1002/j.1460-2075.1988.tb03233.x. [DOI] [PMC free article] [PubMed] [Google Scholar]

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