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. 1997 Apr;17(4):2151–2157. doi: 10.1128/mcb.17.4.2151

A targeted mutation at the T-cell receptor alpha/delta locus impairs T-cell development and reveals the presence of the nearby antiapoptosis gene Dad1.

N A Hong 1, D Cado 1, J Mitchell 1, B D Ortiz 1, S N Hsieh 1, A Winoto 1
PMCID: PMC232063  PMID: 9121464

Abstract

Locus control regions are cis gene regulatory elements comprised of DNase I-hypersensitive sites. These regions usually do not stimulate transcription outside of a chromosomal context, and therefore their ability to regulate the expression of genes is thought to occur through the modification of chromatin accessibility. A locus control region is located downstream of the T-cell receptor (TCR) alpha/delta locus on mouse chromosome 14. This locus control region is known to drive T-cell-specific TCR alpha transcription in transgenic mice. In this report, we describe a targeted deletion of this locus control region and show that this mutation acts at a critical checkpoint in alphabeta T-cell development, between the TCR-intermediate and TCR-high stages. Our analysis further reveals that the antiapoptosis gene Dad1 is at the 3' end of the TCR alpha/delta locus and that Dad1 is required for embryogenesis. We show that mouse Dad1 has a broader expression pattern than the TCR genes, in terms of both tissue and temporal specificity. Finally, we report that the chromatin between TCR alpha and Dad1 is DNase I hypersensitive in a variety of cell types, thus correlating with Dad1 expression and raising the possibility that Dad1 regulatory sequences reside in this region.

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Selected References

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  1. Apel T. W., Scherer A., Adachi T., Auch D., Ayane M., Reth M. The ribose 5-phosphate isomerase-encoding gene is located immediately downstream from that encoding murine immunoglobulin kappa. Gene. 1995 Apr 24;156(2):191–197. doi: 10.1016/0378-1119(94)00901-4. [DOI] [PubMed] [Google Scholar]
  2. Apte S. S., Mattei M. G., Seldin M. F., Olsen B. R. The highly conserved defender against the death 1 (DAD1) gene maps to human chromosome 14q11-q12 and mouse chromosome 14 and has plant and nematode homologs. FEBS Lett. 1995 Apr 24;363(3):304–306. doi: 10.1016/0014-5793(95)00321-y. [DOI] [PubMed] [Google Scholar]
  3. Bennani-Baiti I. M., Jones B. K., Liebhaber S. A., Cooke N. E. Physical linkage of the human growth hormone gene cluster and the skeletal muscle sodium channel alpha-subunit gene (SCN4A) on chromosome 17. Genomics. 1995 Oct 10;29(3):647–652. doi: 10.1006/geno.1995.9954. [DOI] [PubMed] [Google Scholar]
  4. Bresnick E. H., Felsenfeld G. Dual promoter activation by the human beta-globin locus control region. Proc Natl Acad Sci U S A. 1994 Feb 15;91(4):1314–1317. doi: 10.1073/pnas.91.4.1314. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Chen J., Young F., Bottaro A., Stewart V., Smith R. K., Alt F. W. Mutations of the intronic IgH enhancer and its flanking sequences differentially affect accessibility of the JH locus. EMBO J. 1993 Dec;12(12):4635–4645. doi: 10.1002/j.1460-2075.1993.tb06152.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Diaz P., Cado D., Winoto A. A locus control region in the T cell receptor alpha/delta locus. Immunity. 1994 Jun;1(3):207–217. doi: 10.1016/1074-7613(94)90099-x. [DOI] [PubMed] [Google Scholar]
  7. Enver T., Brewer A. C., Patient R. K. Simian virus 40-mediated cis induction of the Xenopus beta-globin DNase I hypersensitive site. Nature. 1985 Dec 19;318(6047):680–683. doi: 10.1038/318680a0. [DOI] [PubMed] [Google Scholar]
  8. Festenstein R., Tolaini M., Corbella P., Mamalaki C., Parrington J., Fox M., Miliou A., Jones M., Kioussis D. Locus control region function and heterochromatin-induced position effect variegation. Science. 1996 Feb 23;271(5252):1123–1125. doi: 10.1126/science.271.5252.1123. [DOI] [PubMed] [Google Scholar]
  9. Fiering S., Epner E., Robinson K., Zhuang Y., Telling A., Hu M., Martin D. I., Enver T., Ley T. J., Groudine M. Targeted deletion of 5'HS2 of the murine beta-globin LCR reveals that it is not essential for proper regulation of the beta-globin locus. Genes Dev. 1995 Sep 15;9(18):2203–2213. doi: 10.1101/gad.9.18.2203. [DOI] [PubMed] [Google Scholar]
  10. Forrester W. C., Epner E., Driscoll M. C., Enver T., Brice M., Papayannopoulou T., Groudine M. A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus. Genes Dev. 1990 Oct;4(10):1637–1649. doi: 10.1101/gad.4.10.1637. [DOI] [PubMed] [Google Scholar]
  11. Fowlkes B. J., Pardoll D. M. Molecular and cellular events of T cell development. Adv Immunol. 1989;44:207–264. doi: 10.1016/s0065-2776(08)60643-4. [DOI] [PubMed] [Google Scholar]
  12. Gill L. L., Zaninetta D., Karjalainen K. A transcriptional enhancer of the mouse T cell receptor delta gene locus. Eur J Immunol. 1991 Mar;21(3):807–810. doi: 10.1002/eji.1830210339. [DOI] [PubMed] [Google Scholar]
  13. Hanscombe O., Whyatt D., Fraser P., Yannoutsos N., Greaves D., Dillon N., Grosveld F. Importance of globin gene order for correct developmental expression. Genes Dev. 1991 Aug;5(8):1387–1394. doi: 10.1101/gad.5.8.1387. [DOI] [PubMed] [Google Scholar]
  14. Ho I. C., Leiden J. M. Regulation of the human T-cell receptor alpha gene enhancer: multiple ubiquitous and T-cell-specific nuclear proteins interact with four hypomethylated enhancer elements. Mol Cell Biol. 1990 Sep;10(9):4720–4727. doi: 10.1128/mcb.10.9.4720. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Hug B. A., Wesselschmidt R. L., Fiering S., Bender M. A., Epner E., Groudine M., Ley T. J. Analysis of mice containing a targeted deletion of beta-globin locus control region 5' hypersensitive site 3. Mol Cell Biol. 1996 Jun;16(6):2906–2912. doi: 10.1128/mcb.16.6.2906. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Itohara S., Mombaerts P., Lafaille J., Iacomini J., Nelson A., Clarke A. R., Hooper M. L., Farr A., Tonegawa S. T cell receptor delta gene mutant mice: independent generation of alpha beta T cells and programmed rearrangements of gamma delta TCR genes. Cell. 1993 Feb 12;72(3):337–348. doi: 10.1016/0092-8674(93)90112-4. [DOI] [PubMed] [Google Scholar]
  17. Joulin V., Bories D., Eléouet J. F., Labastie M. C., Chrétien S., Mattéi M. G., Roméo P. H. A T-cell specific TCR delta DNA binding protein is a member of the human GATA family. EMBO J. 1991 Jul;10(7):1809–1816. doi: 10.1002/j.1460-2075.1991.tb07706.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Koop B. F., Hood L. Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA. Nat Genet. 1994 May;7(1):48–53. doi: 10.1038/ng0594-48. [DOI] [PubMed] [Google Scholar]
  19. Lauzurica P., Krangel M. S. Enhancer-dependent and -independent steps in the rearrangement of a human T cell receptor delta transgene. J Exp Med. 1994 Jan 1;179(1):43–55. doi: 10.1084/jem.179.1.43. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Lerner A., D'Adamio L., Diener A. C., Clayton L. K., Reinherz E. L. CD3 zeta/eta/theta locus is colinear with and transcribed antisense to the gene encoding the transcription factor Oct-1. J Immunol. 1993 Sep 15;151(6):3152–3162. [PubMed] [Google Scholar]
  21. Martin D. I., Fiering S., Groudine M. Regulation of beta-globin gene expression: straightening out the locus. Curr Opin Genet Dev. 1996 Aug;6(4):488–495. doi: 10.1016/s0959-437x(96)80072-4. [DOI] [PubMed] [Google Scholar]
  22. Mombaerts P., Clarke A. R., Hooper M. L., Tonegawa S. Creation of a large genomic deletion at the T-cell antigen receptor beta-subunit locus in mouse embryonic stem cells by gene targeting. Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3084–3087. doi: 10.1073/pnas.88.8.3084. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Mombaerts P., Clarke A. R., Rudnicki M. A., Iacomini J., Itohara S., Lafaille J. J., Wang L., Ichikawa Y., Jaenisch R., Hooper M. L. Mutations in T-cell antigen receptor genes alpha and beta block thymocyte development at different stages. Nature. 1992 Nov 19;360(6401):225–231. doi: 10.1038/360225a0. [DOI] [PubMed] [Google Scholar]
  24. Nakashima T., Sekiguchi T., Kuraoka A., Fukushima K., Shibata Y., Komiyama S., Nishimoto T. Molecular cloning of a human cDNA encoding a novel protein, DAD1, whose defect causes apoptotic cell death in hamster BHK21 cells. Mol Cell Biol. 1993 Oct;13(10):6367–6374. doi: 10.1128/mcb.13.10.6367. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Oettinger M. A., Schatz D. G., Gorka C., Baltimore D. RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination. Science. 1990 Jun 22;248(4962):1517–1523. doi: 10.1126/science.2360047. [DOI] [PubMed] [Google Scholar]
  26. Olson E. N., Arnold H. H., Rigby P. W., Wold B. J. Know your neighbors: three phenotypes in null mutants of the myogenic bHLH gene MRF4. Cell. 1996 Apr 5;85(1):1–4. doi: 10.1016/s0092-8674(00)81073-9. [DOI] [PubMed] [Google Scholar]
  27. Ramírez-Solis R., Davis A. C., Bradley A. Gene targeting in embryonic stem cells. Methods Enzymol. 1993;225:855–878. doi: 10.1016/0076-6879(93)25054-6. [DOI] [PubMed] [Google Scholar]
  28. Redondo J. M., Hata S., Brocklehurst C., Krangel M. S. A T cell-specific transcriptional enhancer within the human T cell receptor delta locus. Science. 1990 Mar 9;247(4947):1225–1229. doi: 10.1126/science.2156339. [DOI] [PubMed] [Google Scholar]
  29. Siebenlist U., Hennighausen L., Battey J., Leder P. Chromatin structure and protein binding in the putative regulatory region of the c-myc gene in Burkitt lymphoma. Cell. 1984 Jun;37(2):381–391. doi: 10.1016/0092-8674(84)90368-4. [DOI] [PubMed] [Google Scholar]
  30. Silberstein S., Collins P. G., Kelleher D. J., Gilmore R. The essential OST2 gene encodes the 16-kD subunit of the yeast oligosaccharyltransferase, a highly conserved protein expressed in diverse eukaryotic organisms. J Cell Biol. 1995 Oct;131(2):371–383. doi: 10.1083/jcb.131.2.371. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Sugimoto A., Hozak R. R., Nakashima T., Nishimoto T., Rothman J. H. dad-1, an endogenous programmed cell death suppressor in Caenorhabditis elegans and vertebrates. EMBO J. 1995 Sep 15;14(18):4434–4441. doi: 10.1002/j.1460-2075.1995.tb00122.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Tybulewicz V. L., Crawford C. E., Jackson P. K., Bronson R. T., Mulligan R. C. Neonatal lethality and lymphopenia in mice with a homozygous disruption of the c-abl proto-oncogene. Cell. 1991 Jun 28;65(7):1153–1163. doi: 10.1016/0092-8674(91)90011-m. [DOI] [PubMed] [Google Scholar]
  33. Vyas P., Vickers M. A., Picketts D. J., Higgs D. R. Conservation of position and sequence of a novel, widely expressed gene containing the major human alpha-globin regulatory element. Genomics. 1995 Oct 10;29(3):679–689. doi: 10.1006/geno.1995.9951. [DOI] [PubMed] [Google Scholar]
  34. Walters M. C., Magis W., Fiering S., Eidemiller J., Scalzo D., Groudine M., Martin D. I. Transcriptional enhancers act in cis to suppress position-effect variegation. Genes Dev. 1996 Jan 15;10(2):185–195. doi: 10.1101/gad.10.2.185. [DOI] [PubMed] [Google Scholar]
  35. Winoto A., Baltimore D. Alpha beta lineage-specific expression of the alpha T cell receptor gene by nearby silencers. Cell. 1989 Nov 17;59(4):649–655. doi: 10.1016/0092-8674(89)90010-x. [DOI] [PubMed] [Google Scholar]
  36. Wu C. Analysis of hypersensitive sites in chromatin. Methods Enzymol. 1989;170:269–289. doi: 10.1016/0076-6879(89)70052-5. [DOI] [PubMed] [Google Scholar]
  37. Xie W. Q., Rothblum L. I. Rapid, small-scale RNA isolation from tissue culture cells. Biotechniques. 1991 Sep;11(3):324, 326-7. [PubMed] [Google Scholar]
  38. Yulug I. G., See C. G., Fisher E. M., Ylug I. G. The DAD1 protein, whose defect causes apoptotic cell death, maps to human chromosome 14. Genomics. 1995 Mar 20;26(2):433–435. doi: 10.1016/0888-7543(95)80241-d. [DOI] [PubMed] [Google Scholar]

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