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. 1997 Dec;17(12):6831–6837. doi: 10.1128/mcb.17.12.6831

A disease-associated G5703A mutation in human mitochondrial DNA causes a conformational change and a marked decrease in steady-state levels of mitochondrial tRNA(Asn).

H Hao 1, C T Moraes 1
PMCID: PMC232539  PMID: 9372914

Abstract

We introduced mitochondrial DNA (mtDNA) from a patient with a mitochondrial myopathy into established mtDNA-less human osteosarcoma cells. The resulting transmitochondrial cybrid lines, containing either exclusively wild-type or mutated (G5703A transition in the tRNA[Asn] gene) mtDNA, were characterized and analyzed for oxidative phosphorylation function and steady-state levels of different RNA species. Functional studies showed that the G5703A mutation severely impairs oxidative phosphorylation function and mitochondrial protein synthesis. We detected a marked reduction in tRNA(Asn) steady-state levels which was not associated with an accumulation of intermediate transcripts containing tRNA(Asn) sequences or decreased transcription. Native polyacrylamide gel electrophoresis showed that the residual tRNA(Asn) fraction in mutant cybrids had an altered conformation, suggesting that the mutation destabilized the tRNA(Asn) secondary or tertiary structure. Our results suggest that the G5703 mutation causes a conformational change in the tRNA(Asn) which may impair aminoacylation. This alteration leads to a severe reduction in the functional tRNA(Asn) pool by increasing its in vivo degradation by mitochondrial RNases.

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Selected References

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  1. Anderson S., Bankier A. T., Barrell B. G., de Bruijn M. H., Coulson A. R., Drouin J., Eperon I. C., Nierlich D. P., Roe B. A., Sanger F. Sequence and organization of the human mitochondrial genome. Nature. 1981 Apr 9;290(5806):457–465. doi: 10.1038/290457a0. [DOI] [PubMed] [Google Scholar]
  2. Bindoff L. A., Howell N., Poulton J., McCullough D. A., Morten K. J., Lightowlers R. N., Turnbull D. M., Weber K. Abnormal RNA processing associated with a novel tRNA mutation in mitochondrial DNA. A potential disease mechanism. J Biol Chem. 1993 Sep 15;268(26):19559–19564. [PubMed] [Google Scholar]
  3. Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem. 1987 Apr;162(1):156–159. doi: 10.1006/abio.1987.9999. [DOI] [PubMed] [Google Scholar]
  4. Chomyn A. In vivo labeling and analysis of human mitochondrial translation products. Methods Enzymol. 1996;264:197–211. doi: 10.1016/s0076-6879(96)64020-8. [DOI] [PubMed] [Google Scholar]
  5. Chomyn A., Martinuzzi A., Yoneda M., Daga A., Hurko O., Johns D., Lai S. T., Nonaka I., Angelini C., Attardi G. MELAS mutation in mtDNA binding site for transcription termination factor causes defects in protein synthesis and in respiration but no change in levels of upstream and downstream mature transcripts. Proc Natl Acad Sci U S A. 1992 May 15;89(10):4221–4225. doi: 10.1073/pnas.89.10.4221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Chomyn A., Meola G., Bresolin N., Lai S. T., Scarlato G., Attardi G. In vitro genetic transfer of protein synthesis and respiration defects to mitochondrial DNA-less cells with myopathy-patient mitochondria. Mol Cell Biol. 1991 Apr;11(4):2236–2244. doi: 10.1128/mcb.11.4.2236. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Deutscher M. P., Lin J. J., Evans J. A. Transfer RNA metabolism in Escherichia coli cells deficient in tRNA nucleotidyltransferase. J Mol Biol. 1977 Dec 25;117(4):1081–1094. doi: 10.1016/s0022-2836(77)80014-4. [DOI] [PubMed] [Google Scholar]
  8. Enriquez J. A., Chomyn A., Attardi G. MtDNA mutation in MERRF syndrome causes defective aminoacylation of tRNA(Lys) and premature translation termination. Nat Genet. 1995 May;10(1):47–55. doi: 10.1038/ng0595-47. [DOI] [PubMed] [Google Scholar]
  9. Enríquez J. A., Attardi G. Analysis of aminoacylation of human mitochondrial tRNAs. Methods Enzymol. 1996;264:183–196. doi: 10.1016/s0076-6879(96)64019-1. [DOI] [PubMed] [Google Scholar]
  10. Enríquez J. A., Attardi G. Evidence for aminoacylation-induced conformational changes in human mitochondrial tRNAs. Proc Natl Acad Sci U S A. 1996 Aug 6;93(16):8300–8305. doi: 10.1073/pnas.93.16.8300. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Fisher R. P., Clayton D. A. A transcription factor required for promoter recognition by human mitochondrial RNA polymerase. Accurate initiation at the heavy- and light-strand promoters dissected and reconstituted in vitro. J Biol Chem. 1985 Sep 15;260(20):11330–11338. [PubMed] [Google Scholar]
  12. Hao H., Moraes C. T. Functional and molecular mitochondrial abnormalities associated with a C --> T transition at position 3256 of the human mitochondrial genome. The effects of a pathogenic mitochondrial tRNA point mutation in organelle translation and RNA processing. J Biol Chem. 1996 Jan 26;271(4):2347–2352. doi: 10.1074/jbc.271.4.2347. [DOI] [PubMed] [Google Scholar]
  13. King M. P., Attardi G. Human cells lacking mtDNA: repopulation with exogenous mitochondria by complementation. Science. 1989 Oct 27;246(4929):500–503. doi: 10.1126/science.2814477. [DOI] [PubMed] [Google Scholar]
  14. King M. P., Attardi G. Post-transcriptional regulation of the steady-state levels of mitochondrial tRNAs in HeLa cells. J Biol Chem. 1993 May 15;268(14):10228–10237. [PubMed] [Google Scholar]
  15. King M. P., Koga Y., Davidson M., Schon E. A. Defects in mitochondrial protein synthesis and respiratory chain activity segregate with the tRNA(Leu(UUR)) mutation associated with mitochondrial myopathy, encephalopathy, lactic acidosis, and strokelike episodes. Mol Cell Biol. 1992 Feb;12(2):480–490. doi: 10.1128/mcb.12.2.480. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. King M. P. Use of ethidium bromide to manipulate ratio of mutated and wild-type mitochondrial DNA in cultured cells. Methods Enzymol. 1996;264:339–344. doi: 10.1016/s0076-6879(96)64032-4. [DOI] [PubMed] [Google Scholar]
  17. Koga Y., Davidson M., Schon E. A., King M. P. Fine mapping of mitochondrial RNAs derived from the mtDNA region containing a point mutation associated with MELAS. Nucleic Acids Res. 1993 Feb 11;21(3):657–662. doi: 10.1093/nar/21.3.657. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Koga Y., Nonaka I., Kobayashi M., Tojyo M., Nihei K. Findings in muscle in complex I (NADH coenzyme Q reductase) deficiency. Ann Neurol. 1988 Dec;24(6):749–756. doi: 10.1002/ana.410240609. [DOI] [PubMed] [Google Scholar]
  19. Larsson N. G., Clayton D. A. Molecular genetic aspects of human mitochondrial disorders. Annu Rev Genet. 1995;29:151–178. doi: 10.1146/annurev.ge.29.120195.001055. [DOI] [PubMed] [Google Scholar]
  20. Li Z., Deutscher M. P. Maturation pathways for E. coli tRNA precursors: a random multienzyme process in vivo. Cell. 1996 Aug 9;86(3):503–512. doi: 10.1016/s0092-8674(00)80123-3. [DOI] [PubMed] [Google Scholar]
  21. Masucci J. P., Davidson M., Koga Y., Schon E. A., King M. P. In vitro analysis of mutations causing myoclonus epilepsy with ragged-red fibers in the mitochondrial tRNA(Lys)gene: two genotypes produce similar phenotypes. Mol Cell Biol. 1995 May;15(5):2872–2881. doi: 10.1128/mcb.15.5.2872. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Moraes C. T., Ciacci F., Bonilla E., Jansen C., Hirano M., Rao N., Lovelace R. E., Rowland L. P., Schon E. A., DiMauro S. Two novel pathogenic mitochondrial DNA mutations affecting organelle number and protein synthesis. Is the tRNA(Leu(UUR)) gene an etiologic hot spot? J Clin Invest. 1993 Dec;92(6):2906–2915. doi: 10.1172/JCI116913. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Moraes C. T., DiMauro S., Zeviani M., Lombes A., Shanske S., Miranda A. F., Nakase H., Bonilla E., Werneck L. C., Servidei S. Mitochondrial DNA deletions in progressive external ophthalmoplegia and Kearns-Sayre syndrome. N Engl J Med. 1989 May 18;320(20):1293–1299. doi: 10.1056/NEJM198905183202001. [DOI] [PubMed] [Google Scholar]
  24. Moraes C. T. Mitochondrial disorders. Curr Opin Neurol. 1996 Oct;9(5):369–374. doi: 10.1097/00019052-199610000-00010. [DOI] [PubMed] [Google Scholar]
  25. Moraes C. T., Ricci E., Bonilla E., DiMauro S., Schon E. A. The mitochondrial tRNA(Leu(UUR)) mutation in mitochondrial encephalomyopathy, lactic acidosis, and strokelike episodes (MELAS): genetic, biochemical, and morphological correlations in skeletal muscle. Am J Hum Genet. 1992 May;50(5):934–949. [PMC free article] [PubMed] [Google Scholar]
  26. Przykorska A. Influence of modified nucleosides on tRNA structure as probed by two plant nucleases. Biochimie. 1995;77(1-2):109–112. doi: 10.1016/0300-9084(96)88113-2. [DOI] [PubMed] [Google Scholar]
  27. Silvestri G., Servidei S., Rana M., Ricci E., Spinazzola A., Paris E., Tonali P. A novel mitochondrial DNA point mutation in the tRNA(Ile) gene is associated with progressive external ophtalmoplegia. Biochem Biophys Res Commun. 1996 Mar 27;220(3):623–627. doi: 10.1006/bbrc.1996.0453. [DOI] [PubMed] [Google Scholar]
  28. Suomalainen A., Ciafaloni E., Koga Y., Peltonen L., DiMauro S., Schon E. A. Use of single strand conformation polymorphism analysis to detect point mutations in human mitochondrial DNA. J Neurol Sci. 1992 Sep;111(2):222–226. doi: 10.1016/0022-510x(92)90074-u. [DOI] [PubMed] [Google Scholar]
  29. Varshney U., Lee C. P., RajBhandary U. L. Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase. J Biol Chem. 1991 Dec 25;266(36):24712–24718. [PubMed] [Google Scholar]
  30. Wallace D. C. Diseases of the mitochondrial DNA. Annu Rev Biochem. 1992;61:1175–1212. doi: 10.1146/annurev.bi.61.070192.005523. [DOI] [PubMed] [Google Scholar]
  31. Wilson G. N., Hollar B. A., Waterson J. R., Schmickel R. D. Molecular analysis of cloned human 18S ribosomal DNA segments. Proc Natl Acad Sci U S A. 1978 Nov;75(11):5367–5371. doi: 10.1073/pnas.75.11.5367. [DOI] [PMC free article] [PubMed] [Google Scholar]

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