Skip to main content
Journal of Clinical Microbiology logoLink to Journal of Clinical Microbiology
. 1997 May;35(5):1239–1243. doi: 10.1128/jcm.35.5.1239-1243.1997

Confirmation of the presence of Mycobacterium tuberculosis and other mycobacteria in mycobacterial growth indicator tubes (MGIT) by multiplex strand displacement amplification.

F Z Badak 1, D L Kiska 1, M O'Connell 1, C M Nycz 1, C Hartley 1, S Setterquist 1, R L Hopfer 1
PMCID: PMC232736  PMID: 9114414

Abstract

Multiplex strand displacement amplification (mSDA) is capable of amplifying three distinct DNA sequences simultaneously. These include sequences present in most genera of mycobacteria, a sequence specific for Mycobacterium tuberculosis, and an internal control. mSDA was used to detect the presence of these target sequences in 154 (72 positive, 76 negative, and 6 failed) clinical specimens cultured in the mycobacterial growth indicator tube (MGIT) system. A wide variety of specimen types were processed and cultured. Once these cultures were deemed positive by MGIT fluorescence or were deemed negative after 8 weeks of incubation, MGIT culture aliquots were processed for mSDA analyses. A chemiluminescent microwell assay was used to detect the amplified products. The procedure was relatively simple and took less than 6 h to complete. The sensitivity of mSDA for detecting acid-fast bacilli was 96.4% compared to that of MGIT culture. Sensitivity and specificity were 97.2 and 96.1%, respectively, when all clinical criteria were considered. mSDA was shown to be a rapid and effective method for confirming the presence of M. tuberculosis and other mycobacteria in positive MGIT cultures.

Full Text

The Full Text of this article is available as a PDF (153.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Abe C., Hirano K., Wada M., Kazumi Y., Takahashi M., Fukasawa Y., Yoshimura T., Miyagi C., Goto S. Detection of Mycobacterium tuberculosis in clinical specimens by polymerase chain reaction and Gen-Probe Amplified Mycobacterium Tuberculosis Direct Test. J Clin Microbiol. 1993 Dec;31(12):3270–3274. doi: 10.1128/jcm.31.12.3270-3274.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. An Q., Buxton D., Hendricks A., Robinson L., Shah J., Lu L., Vera-Garcia M., King W., Olive D. M. Comparison of amplified Q beta replicase and PCR assays for detection of Mycobacterium tuberculosis. J Clin Microbiol. 1995 Apr;33(4):860–867. doi: 10.1128/jcm.33.4.860-867.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bennedsen J., Thomsen V. O., Pfyffer G. E., Funke G., Feldmann K., Beneke A., Jenkins P. A., Hegginbothom M., Fahr A., Hengstler M. Utility of PCR in diagnosing pulmonary tuberculosis. J Clin Microbiol. 1996 Jun;34(6):1407–1411. doi: 10.1128/jcm.34.6.1407-1411.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Clarridge J. E., 3rd, Shawar R. M., Shinnick T. M., Plikaytis B. B. Large-scale use of polymerase chain reaction for detection of Mycobacterium tuberculosis in a routine mycobacteriology laboratory. J Clin Microbiol. 1993 Aug;31(8):2049–2056. doi: 10.1128/jcm.31.8.2049-2056.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Down J. A., O'Connell M. A., Dey M. S., Walters A. H., Howard D. R., Little M. C., Keating W. E., Zwadyk P., Jr, Haaland P. D., McLaurin D. A., 3rd Detection of Mycobacterium tuberculosis in respiratory specimens by strand displacement amplification of DNA. J Clin Microbiol. 1996 Apr;34(4):860–865. doi: 10.1128/jcm.34.4.860-865.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Eisenach K. D., Sifford M. D., Cave M. D., Bates J. H., Crawford J. T. Detection of Mycobacterium tuberculosis in sputum samples using a polymerase chain reaction. Am Rev Respir Dis. 1991 Nov;144(5):1160–1163. doi: 10.1164/ajrccm/144.5.1160. [DOI] [PubMed] [Google Scholar]
  7. Forbes B. A., Hicks K. E. Ability of PCR assay to identify Mycobacterium tuberculosis in BACTEC 12B vials. J Clin Microbiol. 1994 Jul;32(7):1725–1728. doi: 10.1128/jcm.32.7.1725-1728.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Forbes B. A., Hicks K. E. Direct detection of Mycobacterium tuberculosis in respiratory specimens in a clinical laboratory by polymerase chain reaction. J Clin Microbiol. 1993 Jul;31(7):1688–1694. doi: 10.1128/jcm.31.7.1688-1694.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Hance A. J., Grandchamp B., Lévy-Frébault V., Lecossier D., Rauzier J., Bocart D., Gicquel B. Detection and identification of mycobacteria by amplification of mycobacterial DNA. Mol Microbiol. 1989 Jul;3(7):843–849. doi: 10.1111/j.1365-2958.1989.tb00233.x. [DOI] [PubMed] [Google Scholar]
  10. Hanley J. A. Receiver operating characteristic (ROC) methodology: the state of the art. Crit Rev Diagn Imaging. 1989;29(3):307–335. [PubMed] [Google Scholar]
  11. Kirschner P., Rosenau J., Springer B., Teschner K., Feldmann K., Böttger E. C. Diagnosis of mycobacterial infections by nucleic acid amplification: 18-month prospective study. J Clin Microbiol. 1996 Feb;34(2):304–312. doi: 10.1128/jcm.34.2.304-312.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Moore D. F., Curry J. I. Detection and identification of Mycobacterium tuberculosis directly from sputum sediments by Amplicor PCR. J Clin Microbiol. 1995 Oct;33(10):2686–2691. doi: 10.1128/jcm.33.10.2686-2691.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Pao C. C., Yen T. S., You J. B., Maa J. S., Fiss E. H., Chang C. H. Detection and identification of Mycobacterium tuberculosis by DNA amplification. J Clin Microbiol. 1990 Sep;28(9):1877–1880. doi: 10.1128/jcm.28.9.1877-1880.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Pfyffer G. E., Kissling P., Jahn E. M., Welscher H. M., Salfinger M., Weber R. Diagnostic performance of amplified Mycobacterium tuberculosis direct test with cerebrospinal fluid, other nonrespiratory, and respiratory specimens. J Clin Microbiol. 1996 Apr;34(4):834–841. doi: 10.1128/jcm.34.4.834-841.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Spargo C. A., Haaland P. D., Jurgensen S. R., Shank D. D., Walker G. T. Chemiluminescent detection of strand displacement amplified DNA from species comprising the Mycobacterium tuberculosis complex. Mol Cell Probes. 1993 Oct;7(5):395–404. doi: 10.1006/mcpr.1993.1058. [DOI] [PubMed] [Google Scholar]
  16. Thierry D., Cave M. D., Eisenach K. D., Crawford J. T., Bates J. H., Gicquel B., Guesdon J. L. IS6110, an IS-like element of Mycobacterium tuberculosis complex. Nucleic Acids Res. 1990 Jan 11;18(1):188–188. doi: 10.1093/nar/18.1.188. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Vuorinen P., Miettinen A., Vuento R., Hällström O. Direct detection of Mycobacterium tuberculosis complex in respiratory specimens by Gen-Probe Amplified Mycobacterium Tuberculosis Direct Test and Roche Amplicor Mycobacterium Tuberculosis Test. J Clin Microbiol. 1995 Jul;33(7):1856–1859. doi: 10.1128/jcm.33.7.1856-1859.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Walker G. T., Fraiser M. S., Schram J. L., Little M. C., Nadeau J. G., Malinowski D. P. Strand displacement amplification--an isothermal, in vitro DNA amplification technique. Nucleic Acids Res. 1992 Apr 11;20(7):1691–1696. doi: 10.1093/nar/20.7.1691. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Walker G. T., Little M. C., Nadeau J. G., Shank D. D. Isothermal in vitro amplification of DNA by a restriction enzyme/DNA polymerase system. Proc Natl Acad Sci U S A. 1992 Jan 1;89(1):392–396. doi: 10.1073/pnas.89.1.392. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Walker G. T., Nadeau J. G., Spears P. A., Schram J. L., Nycz C. M., Shank D. D. Multiplex strand displacement amplification (SDA) and detection of DNA sequences from Mycobacterium tuberculosis and other mycobacteria. Nucleic Acids Res. 1994 Jul 11;22(13):2670–2677. doi: 10.1093/nar/22.13.2670. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Whittier S., Hopfer R. L., Knowles M. R., Gilligan P. H. Improved recovery of mycobacteria from respiratory secretions of patients with cystic fibrosis. J Clin Microbiol. 1993 Apr;31(4):861–864. doi: 10.1128/jcm.31.4.861-864.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Zwadyk P., Jr, Down J. A., Myers N., Dey M. S. Rendering of mycobacteria safe for molecular diagnostic studies and development of a lysis method for strand displacement amplification and PCR. J Clin Microbiol. 1994 Sep;32(9):2140–2146. doi: 10.1128/jcm.32.9.2140-2146.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Journal of Clinical Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES