Table 1.
Prediction quality from 100 lowest-frequency modes using different NMA potentials
Dota | Overlapa | Isotropicb | |
---|---|---|---|
Randomc | 0.5 | 0.3 | 0 |
HCA | 0.599 (0.199) | 0.520 (0.167) | 0.617 (0.131) |
ANM (16 Å)d | 0.556 (0.190) | 0.525 (0.172) | 0.676 (0.111) |
ElN (5 Å)d | 0.641 (0.208) | 0.583 (0.184) | 0.680 (0.128) |
DNM (9 Å)d | 0.650 (0.209) | 0.575 (0.181) | 0.655 (0.136) |
CHARMM BNM | 0.655 (0.211) | 0.608 (0.188) | 0.658 (0.128) |
mean and standard deviation of comparisons with ADPs from individual Cα atoms
mean and standard deviation for isotropic correlation over 83 entire structures
computed for randomly oriented ADPs with anisotropy 0.5.
choice of optimal cutoff parameter in parentheses.