Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1977 Aug;131(2):438–445. doi: 10.1128/jb.131.2.438-445.1977

Isolation and Characterization of a Bacillus subtilis Mutant with a Defective N-Glycosidase Activity for Uracil-Containing Deoxyribonucleic Acid

Fumiko Makino 1, Nobuo Munakata 1
PMCID: PMC235449  PMID: 407210

Abstract

Crude cell extracts of Bacillus subtilis 168T exhibit enzyme activity capable of releasing free uracil from phage PBS1 deoxyribonucleic acid (DNA) in the presence of ethylenediaminetetraacetate. By measuring the enzyme activity in 300 clones that emanated from mutagenized cells, we obtained a mutant strain that did not show this N-glycosidase activity. The mutant strain, designated as TKJ6901 (urg-1) exhibited no physiological abnormalities. We observed the intracellular action of the enzyme by following the fate of uracil-containing DNA in cells from wild-type and mutant cultures. When infection with phage PBS1 was allowed in the presence of chloramphenicol, extensive degradation of phage DNA was observed only in the wild-type cells. When bromouracil residues were converted to uracil residues by ultraviolet light irradiation in the presence of cysteamine, the DNA was extensively fragmented in the wild-type cells. These single-strand breaks were rejoined upon postirradiation incubation. In contrast, such fragmentation of the DNA was not observed in the mutant cells, indicating that the uracil residues were not removed from the DNA. This demonstrated that the N-glycosidase activity was involved in the excision of uracil in DNA. A transformation assay with four types of recipient strains with combinations of N-glycosidase and DNA polymerase I deficiencies indicated that DNA polymerase I was involved in the later steps of this base excision repair pathway initiated by the action of the N-glycosidase.

Full text

PDF
438

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bishop R. J., Sueoka N. 5-Bromouracil-tolerant mutants of Bacillus subtilis. J Bacteriol. 1972 Nov;112(2):870–876. doi: 10.1128/jb.112.2.870-876.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Duncan J., Hamilton L., Friedberg E. C. Enzymatic degradation of uracil-containing DNA. II. Evidence for N-glycosidase and nuclease activities in unfractionated extracts of Bacillus subtilis. J Virol. 1976 Aug;19(2):338–345. doi: 10.1128/jvi.19.2.338-345.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. FARMER J. L., ROTHMAN F. TRANSFORMABLE THYMINE-REQUIRING MUTANT OF BACILLUS SUBTILS. J Bacteriol. 1965 Jan;89:262–263. doi: 10.1128/jb.89.1.262-263.1965. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Friedberg E. C., Ganesan A. K., Minton K. N-Glycosidase activity in extracts of Bacillus subtilis and its inhibition after infection with bacteriophage PBS2. J Virol. 1975 Aug;16(2):315–321. doi: 10.1128/jvi.16.2.315-321.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Hadi S. M., Goldthwait D. A. Endonuclease II of Escherichia coli. Degradation of partially depurinated deoxyribonucleic acid. Biochemistry. 1971 Dec 21;10(26):4986–4993. doi: 10.1021/bi00802a024. [DOI] [PubMed] [Google Scholar]
  6. Katz G. E., Price A. R., Pomerantz M. J. Bacteriophage PBS2-induced inhibition of uracil-containing DNA degradation. J Virol. 1976 Nov;20(2):535–538. doi: 10.1128/jvi.20.2.535-538.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Kirtikar D. M., Goldthwait D. A. The enzymatic release of O6-methylguanine and 3-methyladenine from DNA reacted with the carcinogen N-methyl-N-nitrosourea. Proc Natl Acad Sci U S A. 1974 May;71(5):2022–2026. doi: 10.1073/pnas.71.5.2022. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. LOWRY O. H., ROSEBROUGH N. J., FARR A. L., RANDALL R. J. Protein measurement with the Folin phenol reagent. J Biol Chem. 1951 Nov;193(1):265–275. [PubMed] [Google Scholar]
  9. Lindahl T. An N-glycosidase from Escherichia coli that releases free uracil from DNA containing deaminated cytosine residues. Proc Natl Acad Sci U S A. 1974 Sep;71(9):3649–3653. doi: 10.1073/pnas.71.9.3649. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Lindahl T. New class of enzymes acting on damaged DNA. Nature. 1976 Jan 1;259(5538):64–66. doi: 10.1038/259064a0. [DOI] [PubMed] [Google Scholar]
  11. Lion M. B. Search for a mechanism for the increased sensitivity of 5-bromouracil-substituted DNA to ultraviolet radiation. Biochim Biophys Acta. 1968 Feb 26;155(2):505–520. doi: 10.1016/0005-2787(68)90195-0. [DOI] [PubMed] [Google Scholar]
  12. Munakata N., Rupert C. S. Effects of DNA-polymerase-defective and recombination-deficient mutations on the ultraviolet sensitivity of Bacillus subtilis spores. Mutat Res. 1975 Feb;27(2):157–169. doi: 10.1016/0027-5107(75)90075-5. [DOI] [PubMed] [Google Scholar]
  13. Negishi K., Hayatsu H., Tanooka H. PolA dependent repair of 5-bromouracil-labelled Bacillus subtilis transforming DNA irradiated with U.V. in the presence of cysteamine. Int J Radiat Biol Relat Stud Phys Chem Med. 1976 Nov;30(5):491–494. doi: 10.1080/09553007614551321. [DOI] [PubMed] [Google Scholar]
  14. Sekiguchi M., Hayakawa H., Makino F., Tanaka K., Okada Y. A human enzyme that liberates uracil from DNA. Biochem Biophys Res Commun. 1976 Nov 22;73(2):293–299. doi: 10.1016/0006-291x(76)90706-3. [DOI] [PubMed] [Google Scholar]
  15. Spizizen J. TRANSFORMATION OF BIOCHEMICALLY DEFICIENT STRAINS OF BACILLUS SUBTILIS BY DEOXYRIBONUCLEATE. Proc Natl Acad Sci U S A. 1958 Oct 15;44(10):1072–1078. doi: 10.1073/pnas.44.10.1072. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Strauss B. S., Robbins M. DNA methylated in vitro by a monofunctional alkylating agent as a substrate for a specific nuclease from Micrococcus lysodeikticus. Biochim Biophys Acta. 1968 Jun 18;161(1):68–75. doi: 10.1016/0005-2787(68)90295-5. [DOI] [PubMed] [Google Scholar]
  17. Tomita F. Changes in DNase activities in Bacillus subtilis infected with bacteriophage PBS 1. J Virol. 1975 May;15(5):1073–1080. doi: 10.1128/jvi.15.5.1073-1080.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. WYATT G. R. The purine and pyrimidine composition of deoxypentose nucleic acids. Biochem J. 1951 May;48(5):584–590. doi: 10.1042/bj0480584. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Yamagishi H., Takahashi I. Transducing particles of PBS 1. Virology. 1968 Dec;36(4):639–645. doi: 10.1016/0042-6822(68)90194-3. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES