Abstract
Aim
To define the Y-chromosome genetic structure in a sample of men from southern Croatia.
Methods
Blood samples were collected from 166 unrelated healthy men from southern Croatia at the Department of Forensic Medicine and Biochemical Laboratory of University Hospital Split between 2004 and 2007. Genomic DNA was extracted using the standard procedures. Seventeen Y-chromosome short tandem repeat (Y-STR) polymorphic loci (DYS456, DYS389I, DYS390, DYS389II, DYS458, DYS19, DYS385, DYS393, DYS391, DYS439, DYS635, DYS392, GATAH4, DYS437, DYS438, and DYS448) were analyzed using AmpFlSTR Yfiler Polymerase Chain Reaction Amplification Kit.
Results
We observed 152 different haplotypes. Total haplotype diversity was 0.997289 and 141 haplotypes (84.49%) were unique. The most common haplotype was shared by only 4 men in the study sample. The locus diversity ranged between 0.21292 for DYS392 and 0.75546 for DYS439 locus.
Conclusion
The Y-chromosome structure in men from southern Croatia is very diverse. Combination of Y chromosome 17 STR loci may be used as a powerful tool for individual identification and parentage analysis in the southern Croatian male population.
Except for occasional mutations, the major part of the male-specific Y chromosome is inherited from father to son unchanged, as a haplotype of physically linked markers, because it is not involved in recombination with X chromosome. Genotyping of this Y-specific non-recombining region (NRY) can be used to track paternal lineage, since all patrilineal relatives share the same NRY haplotype. Thus, NRY multiple marker genotyping is used to infer paternity when the putative father is not available for DNA analysis or to validate biological relationships when one of the relatives is unable to take part in the DNA typing test. NRY multiple marker genotyping is also used in forensic casework to identify a male perpetrator’s DNA in mixed samples with an excess of female victim’s DNA. In such cases, it is a better option than polymerase chain reaction (PCR)-based amplification of female autosomal DNA markers or potential overlap of autosomal DNA marker profiles (1).
Genotyping small tandem repeats (STR) or microsatellite repeats or simple sequence repeats represents one of the most reliable and reproducible DNA profiling methods in forensic investigation. Genotyping multiple Y-chromosomal STR (Y-STR) markers is widely used in forensic and population studies in spite of its lower discrimination potential in comparison with autosomal STR genotyping. The constantly growing number of Y-STR markers available for forensic, evolutionary, and population studies increases Y-haplotype differentiation potential in distinct male populations (2).
The aim of our study was to use 17 Y-STRs to define the genetic structure of Y chromosome in a sample of men from southern Croatia. Our results may contribute to the development of a population database that may be used to estimate the haplotype frequency, ie, the probability that two or more unrelated men share the same Y-STR haplotype. Furthermore, a Y-STR haplotype database for Croatian population may serve for assigning geographic origin to male individuals, since Y chromosomal markers are more prone to genetic drift than autosomal markers due to smaller effective population size, which enhances geographically-based differentiation of Y lineages.
Materials and methods
Population
The blood samples were collected between 2004 and 2007 at the Department of Forensic Medicine, Split University Hospital, from unrelated healthy male volunteers (n = 66) and in Biochemical Laboratory of the Split University Hospital from unrelated male individuals (n = 100) who came for regular medical examinations. All known ancestors of participants were of southern Croatian origin (Figure 1). All individuals gave their informed consent and the conduct of the study was approved by the institution’s Ethics Committee.
Figure 1.
The map of the Republic of Croatia. The circle indicates the region of southern Croatia.
DNA analysis
DNA was extracted from peripheral blood by the Chelex method (3). From 0.5 to 1 ng target DNA was amplified using AmpFlSTR Yfiler PCR Amplification Kit in accordance with the AmpFlSTR Yfiler PCR Amplification Kit User Manual in a GeneAmp PCR System (Applied Biosystems, Foster City, CA, USA). The Kit includes a 9-marker European minimal haplotype (minHt), an 11-marker SWGDAM core set (minHt plus DYS438 and DYS439), and markers DYS437, DYS448, DYS456, DYS458, DYS635 (Y GATA C4), and Y GATA H4, allowing single-tube PCR co-amplification of multiple STR loci and four-color detection of the resulting length-variant STR alleles. PCR reactions were carried out in the final volume of 12.5 μL on a GeneAmp PCR System 9700 (Applied Biosystems). Separation of STR alleles, together with GeneScan-500 Internal Lane Size Standard (LIZ-500), was performed on the ABI PRISM 310 sequencer (Applied Biosystems) using GeneScan, version 3.7, software (Applied Biosystems) in order to determine their size by applying Yfiler Allelic Ladder. Alleles were named as suggested by the DNA Commission (ISFG) (4).
Data analysis
Allelic frequencies were estimated by direct counting. Haplotype and locus diversity within the population was calculated using the Arlequin 2000 package (5), according to the formula:
where n is the number of samples, k the number of haplotypes, and pi is the frequency of the i-th haplotype. Locus diversity was estimated according to the same equation as haplotype diversity (the number of alleles was used instead of the number of haplotypes and allele frequencies were used instead of haplotype frequencies).
Presentation of data follows the guidelines for publication of population data as required by the journal (6) and the DNA Commission of the International Society of Forensic Genetics (6,7).
Results and discussion
STR locus diversity for 17 Y-specific markers was analyzed in 166 unrelated men from southern Croatia. Allele frequencies and locus diversity across 17 Y-STR loci are shown in Table 1, while 17 Y-STR marker haplotypes are shown in Table 2. We observed 152 different haplotypes. Total haplotype diversity was 0.997289 and 141 haplotypes (84.49%) were unique. Haplotype No. 27 was the most common haplotype, shared by 4 men in our study sample (Table 2). The locus diversity ranged from 0.21292 for DYS392 to 0.75546 for DYS439 locus.
Table 1.
Allele frequencies and locus diversity at seventeen Y chromosome short tandem repeats in southern Croatian population
Allele | Loci |
||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DYS456 | DYS389I | DYS390 | DYS389II | DYS458 | DYS19 | DYS393 | DYS391 | DYS439 | DYS635 | DYS392 | GATA H4 | DYS437 | DYS438 | DYS448 | Genotype | DYS385 | |
8 | 10-14 | 0.012 | |||||||||||||||
9 | 0.006 | 0.036 | 0.060 | 11-13 | 0.036 | ||||||||||||
10 | 0.006 | 0.337 | 0.139 | 0.048 | 0.012 | 0.681 | 11-14 | 0.090 | |||||||||
11 | 0.054 | 0.596 | 0.187 | 0.886 | 0.645 | 0.229 | 11-15 | 0.090 | |||||||||
12 | 0.078 | 0.090 | 0.030 | 0.319 | 0.030 | 0.289 | 0.024 | 12-15 | 0.018 | ||||||||
13 | 0.006 | 0.740 | 0.006 | 0.048 | 0.831 | 0.301 | 0.030 | 0.048 | 0.006 | 13-14 | 0.036 | ||||||
14 | 0.060 | 0.169 | 0.036 | 0.175 | 0.012 | 0.048 | 0.006 | 0.337 | 13-15 | 0.024 | |||||||
15 | 0.633 | 0.012 | 0.150 | 0.235 | 0.006 | 0.006 | 0.608 | 13-16 | 0.018 | ||||||||
16 | 0.240 | 0.187 | 0.463 | 0.054 | 13-17 | 0.018 | |||||||||||
17 | 0.042 | 0.440 | 0.072 | 13-19 | 0.006 | ||||||||||||
18 | 0.012 | 0.157 | 0.006 | 0.024 | 14-14 | 0.024 | |||||||||||
19 | 0.006 | 0.018 | 0.452 | 14-15 | 0.446 | ||||||||||||
20 | 0.006 | 0.024 | 0.452 | 14-16 | 0.030 | ||||||||||||
21 | 0.120 | 0.060 | 14-17 | 0.018 | |||||||||||||
22 | 0.078 | 0.205 | 0.012 | 15-15 | 0.048 | ||||||||||||
23 | 0.084 | 0.536 | 15-18 | 0.006 | |||||||||||||
24 | 0.627 | 0.115 | 15-19 | 0.012 | |||||||||||||
25 | 0.199 | 16-18 | 0.024 | ||||||||||||||
26 | 0.012 | 17-18 | 0.018 | ||||||||||||||
27 | 11-16 | 0.006 | |||||||||||||||
28 | 0.030 | 12-14 | 0.006 | ||||||||||||||
29 | 0.108 | 15-17 | 0.006 | ||||||||||||||
30 | 0.313 | 17-17 | 0.006 | ||||||||||||||
31 | 0.446 | ||||||||||||||||
32 | 0.090 | ||||||||||||||||
33 | 0.012 | ||||||||||||||||
LDV* | 0.53956 | 0.41877 | 0.55794 | 0.68631 | 0.72721 | 0.69573 | 0.29941 | 0.53151 | 0.75546 | 0.64629 | 0.21292 | 0.50142 | 0.51617 | 0.48287 | 0.59094 | 0.74134 |
*LDV – locus diversity value.
Table 2.
Y short tandem repeat haplotypes in southern Croatian population*
H | n | f | Loci |
|||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DYS 456 | DYS 389I | DYS 390 | DYS 389II | DYS 458 | DYS 19 | DYS 385 | DYS 393 | DYS 391 | DYS 439 | DYS 635 | DYS 392 | DYS H4 | DYS 437 | DYS 438 | DYS 448 | |||
1 | 1 | 0.006 | 15 | 13 | 24 | 30 | 18 | 17 | 14-15 | 13 | 11 | 13 | 24 | 11 | 11 | 15 | 10 | 19 |
2 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 16 | 14-16 | 13 | 11 | 14 | 22 | 11 | 12 | 15 | 10 | 19 |
3 | 1 | 0.006 | 14 | 13 | 24 | 31 | 17 | 16 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 19 |
4 | 2 | 0.012 | 16 | 14 | 25 | 31 | 17 | 16 | 11-15 | 13 | 11 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
5 | 1 | 0.006 | 15 | 13 | 25 | 31 | 17 | 14 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
6 | 1 | 0.006 | 15 | 13 | 24 | 30 | 18 | 16 | 14-15 | 13 | 12 | 12 | 24 | 11 | 11 | 15 | 10 | 19 |
7 | 2 | 0.012 | 16 | 14 | 25 | 31 | 16 | 16 | 11-15 | 12 | 11 | 10 | 23 | 11 | 11 | 14 | 11 | 20 |
8 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 16 | 14-16 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
9 | 1 | 0.006 | 16 | 13 | 23 | 30 | 17 | 13 | 15-18 | 13 | 10 | 12 | 23 | 11 | 12 | 14 | 10 | 20 |
10 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 14 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
11 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 14 | 14-15 | 13 | 11 | 13 | 21 | 11 | 12 | 15 | 10 | 19 |
12 | 1 | 0.006 | 14 | 12 | 23 | 28 | 15 | 14 | 13-14 | 13 | 10 | 11 | 23 | 11 | 11 | 16 | 10 | 19 |
13 | 1 | 0.006 | 17 | 13 | 24 | 30 | 16 | 13 | 16-18 | 13 | 10 | 12 | 21 | 11 | 12 | 14 | 10 | 20 |
14 | 1 | 0.006 | 18 | 14 | 26 | 31 | 15 | 16 | 11-13 | 14 | 10 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
15 | 1 | 0.006 | 15 | 13 | 24 | 30 | 15 | 13 | 17-18 | 13 | 11 | 11 | 23 | 11 | 12 | 14 | 10 | 20 |
16 | 3 | 0.018 | 16 | 14 | 25 | 31 | 15 | 16 | 11-15 | 13 | 11 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
17 | 1 | 0.006 | 15 | 13 | 24 | 29 | 16 | 14 | 13-16 | 12 | 10 | 10 | 21 | 11 | 12 | 14 | 9 | 20 |
18 | 1 | 0.006 | 16 | 13 | 25 | 30 | 16 | 17 | 10-14 | 13 | 10 | 11 | 23 | 11 | 12 | 14 | 11 | 20 |
19 | 1 | 0.006 | 15 | 13 | 24 | 29 | 17 | 15 | 11-14 | 13 | 11 | 12 | 23 | 13 | 13 | 15 | 12 | 20 |
20 | 1 | 0.006 | 15 | 13 | 24 | 30 | 18 | 16 | 15-15 | 13 | 10 | 13 | 22 | 11 | 11 | 15 | 10 | 19 |
21 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 16 | 14-15 | 13 | 11 | 12 | 24 | 11 | 11 | 15 | 10 | 20 |
22 | 2 | 0.012 | 15 | 13 | 24 | 31 | 18 | 16 | 14-15 | 13 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
23 | 1 | 0.006 | 16 | 14 | 24 | 31 | 15 | 16 | 11-15 | 13 | 11 | 11 | 23 | 11 | 13 | 14 | 11 | 20 |
24 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 14 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 19 |
25 | 1 | 0.006 | 14 | 12 | 23 | 28 | 16 | 15 | 16-18 | 14 | 12 | 12 | 22 | 12 | 11 | 14 | 10 | 20 |
26 | 2 | 0.012 | 15 | 13 | 24 | 31 | 17 | 16 | 14-15 | 13 | 11 | 12 | 22 | 11 | 11 | 15 | 10 | 19 |
27 | 4 | 0.024 | 15 | 13 | 24 | 31 | 17 | 15 | 14-15 | 13 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
28 | 1 | 0.006 | 17 | 15 | 25 | 32 | 15 | 15 | 11-15 | 13 | 11 | 10 | 23 | 11 | 12 | 14 | 11 | 21 |
29 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 14 | 14-15 | 13 | 11 | 15 | 24 | 11 | 11 | 15 | 10 | 19 |
30 | 1 | 0.006 | 15 | 15 | 24 | 30 | 17 | 16 | 14-16 | 13 | 10 | 12 | 22 | 11 | 11 | 15 | 10 | 18 |
31 | 1 | 0.006 | 15 | 13 | 22 | 29 | 18 | 13 | 14-17 | 13 | 10 | 12 | 22 | 15 | 10 | 15 | 11 | 19 |
32 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 16 | 14-15 | 13 | 10 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
33 | 1 | 0.006 | 16 | 13 | 25 | 30 | 15 | 16 | 11-14 | 13 | 10 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
34 | 1 | 0.006 | 16 | 14 | 25 | 31 | 15 | 16 | 11-15 | 13 | 11 | 10 | 23 | 11 | 12 | 14 | 11 | 21 |
35 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 17 | 14-15 | 13 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
36 | 1 | 0.006 | 15 | 13 | 24 | 29 | 16 | 14 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
37 | 1 | 0.006 | 16 | 13 | 25 | 31 | 17 | 16 | 14-15 | 13 | 10 | 14 | 22 | 11 | 11 | 15 | 10 | 19 |
38 | 1 | 0.006 | 16 | 13 | 24 | 30 | 15 | 16 | 11-13 | 13 | 10 | 11 | 23 | 11 | 12 | 14 | 11 | 21 |
39 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 14 | 14-15 | 12 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 18 |
40 | 1 | 0.006 | 15 | 13 | 24 | 30 | 18 | 16 | 14-15 | 13 | 11 | 11 | 22 | 11 | 11 | 15 | 10 | 19 |
41 | 1 | 0.006 | 14 | 12 | 22 | 28 | 14 | 15 | 13-14 | 13 | 10 | 11 | 20 | 11 | 11 | 16 | 10 | 20 |
42 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 16 | 14-15 | 13 | 10 | 13 | 22 | 11 | 11 | 14 | 10 | 19 |
43 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 15 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 20 |
44 | 1 | 0.006 | 16 | 13 | 24 | 30 | 14 | 15 | 13-17 | 12 | 9 | 12 | 21 | 11 | 12 | 14 | 9 | 21 |
45 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 14 | 14-15 | 13 | 11 | 13 | 23 | 11 | 12 | 15 | 10 | 19 |
46 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 16 | 14-14 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
47 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 14 | 14-15 | 13 | 11 | 14 | 21 | 11 | 11 | 15 | 10 | 19 |
48 | 1 | 0.006 | 16 | 14 | 25 | 30 | 15 | 16 | 11-15 | 13 | 10 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
49 | 1 | 0.006 | 14 | 12 | 24 | 28 | 16 | 15 | 15-19 | 12 | 10 | 12 | 21 | 12 | 12 | 14 | 9 | 19 |
50 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 16 | 14-15 | 13 | 10 | 13 | 24 | 11 | 11 | 15 | 10 | 20 |
51 | 1 | 0.006 | 16 | 14 | 25 | 30 | 15 | 16 | 11-15 | 13 | 11 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
52 | 1 | 0.006 | 15 | 13 | 22 | 30 | 17 | 16 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
53 | 1 | 0.006 | 16 | 14 | 24 | 31 | 15 | 17 | 11-13 | 13 | 11 | 11 | 23 | 11 | 14 | 14 | 11 | 20 |
54 | 1 | 0.006 | 15 | 12 | 24 | 30 | 17 | 16 | 14-15 | 13 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
55 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 16 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
56 | 1 | 0.006 | 15 | 13 | 24 | 30 | 18 | 16 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
57 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 14 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 11 | 19 |
58 | 2 | 0.012 | 15 | 13 | 24 | 30 | 17 | 16 | 14-15 | 13 | 10 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
59 | 1 | 0.006 | 15 | 13 | 24 | 32 | 18 | 15 | 14-15 | 13 | 12 | 12 | 23 | 11 | 11 | 15 | 10 | 20 |
60 | 2 | 0.012 | 16 | 14 | 25 | 31 | 16 | 16 | 11-15 | 13 | 11 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
61 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 16 | 14-16 | 13 | 11 | 12 | 22 | 11 | 11 | 15 | 10 | 19 |
62 | 1 | 0.006 | 15 | 13 | 24 | 30 | 18 | 15 | 14-15 | 13 | 11 | 12 | 24 | 11 | 11 | 15 | 10 | 19 |
63 | 1 | 0.006 | 14 | 12 | 23 | 30 | 17 | 15 | 13-14 | 13 | 10 | 11 | 21 | 11 | 11 | 16 | 10 | 20 |
64 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 16 | 14-15 | 13 | 11 | 12 | 24 | 12 | 11 | 15 | 10 | 19 |
65 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 15 | 14-15 | 13 | 11 | 13 | 23 | 12 | 11 | 15 | 10 | 20 |
66 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 14 | 14-15 | 13 | 11 | 12 | 22 | 11 | 11 | 15 | 10 | 19 |
67 | 1 | 0.006 | 15 | 13 | 22 | 30 | 17 | 16 | 13-15 | 13 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
68 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 16 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 20 |
69 | 1 | 0.006 | 15 | 13 | 24 | 31 | 15 | 15 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
70 | 1 | 0.006 | 15 | 13 | 24 | 32 | 17 | 16 | 14-15 | 13 | 11 | 12 | 24 | 11 | 11 | 15 | 10 | 20 |
71 | 1 | 0.006 | 16 | 13 | 25 | 30 | 15 | 17 | 11-13 | 13 | 12 | 11 | 23 | 11 | 13 | 14 | 11 | 20 |
72 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 16 | 14-15 | 13 | 11 | 14 | 21 | 11 | 12 | 15 | 10 | 20 |
73 | 1 | 0.006 | 16 | 13 | 25 | 30 | 15 | 17 | 11-13 | 13 | 11 | 11 | 23 | 11 | 13 | 14 | 11 | 20 |
74 | 1 | 0.006 | 15 | 13 | 24 | 30 | 17 | 15 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 20 |
75 | 1 | 0.006 | 15 | 13 | 23 | 30 | 19 | 14 | 13-17 | 12 | 10 | 12 | 20 | 11 | 11 | 14 | 10 | 20 |
76 | 1 | 0.006 | 16 | 13 | 24 | 31 | 17 | 15 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 20 |
77 | 1 | 0.006 | 15 | 13 | 24 | 30 | 17 | 15 | 14-15 | 13 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
78 | 1 | 0.006 | 15 | 13 | 24 | 30 | 17 | 17 | 14-15 | 13 | 10 | 12 | 24 | 11 | 11 | 14 | 10 | 20 |
78 | 1 | 0.006 | 14 | 12 | 23 | 29 | 16 | 15 | 13-14 | 13 | 10 | 11 | 21 | 11 | 11 | 16 | 10 | 20 |
80 | 1 | 0.006 | 15 | 12 | 24 | 31 | 17 | 16 | 14-14 | 13 | 10 | 13 | 23 | 11 | 12 | 15 | 10 | 19 |
81 | 1 | 0.006 | 16 | 13 | 23 | 29 | 14 | 15 | 13-16 | 12 | 9 | 12 | 22 | 11 | 12 | 14 | 9 | 22 |
82 | 1 | 0.006 | 15 | 13 | 24 | 30 | 17 | 15 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 20 |
83 | 1 | 0.006 | 15 | 13 | 23 | 31 | 17 | 16 | 14-15 | 13 | 10 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
84 | 1 | 0.006 | 17 | 13 | 25 | 30 | 16 | 16 | 11-14 | 13 | 11 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
85 | 1 | 0.006 | 15 | 12 | 22 | 29 | 17 | 15 | 13-14 | 13 | 10 | 12 | 20 | 11 | 11 | 16 | 10 | 20 |
86 | 1 | 0.006 | 15 | 14 | 23 | 30 | 17 | 14 | 13-19 | 12 | 10 | 13 | 22 | 11 | 12 | 15 | 9 | 21 |
87 | 1 | 0.006 | 15 | 13 | 22 | 30 | 17 | 16 | 14-15 | 13 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
88 | 1 | 0.006 | 16 | 13 | 24 | 30 | 17 | 14 | 11-14 | 13 | 11 | 12 | 23 | 13 | 12 | 15 | 12 | 19 |
89 | 1 | 0.006 | 15 | 13 | 24 | 30 | 16 | 13 | 17-18 | 13 | 11 | 11 | 23 | 11 | 12 | 14 | 10 | 20 |
90 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 16 | 14-15 | 13 | 10 | 13 | 22 | 11 | 11 | 15 | 10 | 19 |
91 | 1 | 0.006 | 15 | 12 | 23 | 30 | 16 | 14 | 13-14 | 13 | 10 | 11 | 21 | 11 | 11 | 16 | 10 | 20 |
92 | 1 | 0.006 | 15 | 13 | 24 | 30 | 17 | 14 | 15-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 19 |
93 | 1 | 0.006 | 16 | 13 | 25 | 29 | 15 | 16 | 11-15 | 13 | 10 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
94 | 1 | 0.006 | 15 | 13 | 22 | 29 | 14 | 14 | 14-14 | 13 | 10 | 11 | 23 | 10 | 10 | 16 | 10 | 20 |
95 | 1 | 0.006 | 16 | 13 | 24 | 29 | 18 | 14 | 11-14 | 13 | 12 | 12 | 23 | 12 | 11 | 15 | 11 | 19 |
96 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 15 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 20 |
97 | 1 | 0.006 | 16 | 13 | 25 | 30 | 17 | 16 | 11-14 | 13 | 10 | 10 | 23 | 11 | 13 | 14 | 11 | 20 |
98 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 16 | 14-15 | 13 | 11 | 13 | 24 | 11 | 11 | 15 | 10 | 19 |
99 | 1 | 0.006 | 16 | 13 | 24 | 31 | 18 | 14 | 11-14 | 13 | 11 | 12 | 23 | 13 | 12 | 15 | 12 | 19 |
100 | 1 | 0.006 | 16 | 13 | 25 | 29 | 13 | 17 | 11-14 | 13 | 11 | 10 | 23 | 11 | 13 | 14 | 11 | 20 |
101 | 1 | 0.006 | 15 | 13 | 24 | 32 | 17 | 16 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 20 |
102 | 1 | 0.006 | 14 | 14 | 23 | 30 | 17 | 15 | 12-15 | 13 | 10 | 11 | 21 | 11 | 11 | 14 | 10 | * |
103 | 1 | 0.006 | 16 | 13 | 24 | 30 | 17 | 14 | 11-14 | 13 | 10 | 12 | 23 | 13 | 12 | 15 | 12 | 19 |
104 | 1 | 0.006 | 15 | 14 | 24 | 32 | 17 | 15 | 14-15 | 13 | 11 | 11 | 22 | 11 | 11 | 15 | 10 | 19 |
105 | 2 | 0.012 | 15 | 13 | 24 | 31 | 18 | 16 | 14-15 | 13 | 11 | 14 | 22 | 11 | 11 | 15 | 10 | 19 |
106 | 2 | 0.012 | 15 | 13 | 24 | 33 | 17 | 16 | 15-15 | 13 | 10 | 12 | 21 | 11 | 11 | 15 | 10 | 20 |
107 | 1 | 0.006 | 16 | 13 | 25 | 30 | 15 | 16 | 11-13 | 13 | 10 | 11 | 23 | 11 | 12 | 14 | 11 | 21 |
108 | 1 | 0.006 | 16 | 13 | 24 | 30 | 16 | 14 | 17-17 | 13 | 10 | 12 | 21 | 11 | 12 | 14 | 10 | 20 |
109 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 15 | 14-16 | 13 | 11 | 13 | 24 | 11 | 11 | 15 | 10 | 18 |
110 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 14 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 19 |
111 | 1 | 0.006 | 16 | 13 | 25 | 30 | 16 | 16 | 10-14 | 13 | 10 | 11 | 23 | 11 | 12 | 14 | 11 | 20 |
112 | 1 | 0.006 | 16 | 13 | 24 | 30 | 18 | 16 | 14-15 | 13 | 11 | 14 | 23 | 11 | 11 | 15 | 10 | 19 |
113 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 16 | 14-15 | 13 | 11 | 13 | 24 | 11 | 11 | 15 | 10 | 19 |
114 | 1 | 0.006 | 15 | 13 | 24 | 31 | 19 | 15 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
115 | 2 | 0.012 | 17 | 13 | 25 | 29 | 16 | 16 | 11-14 | 13 | 10 | 11 | 23 | 11 | 12 | 14 | 11 | 20 |
116 | 1 | 0.006 | 19 | 13 | 24 | 30 | 15 | 13 | 16-18 | 13 | 10 | 12 | 21 | 11 | 12 | 14 | 10 | 20 |
117 | 1 | 0.006 | 15 | 13 | 24 | 30 | 20 | 13 | 17-18 | 13 | 11 | 11 | 23 | 11 | 12 | 14 | 10 | 20 |
118 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 17 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
119 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 15 | 15-15 | 13 | 10 | 13 | 24 | 11 | 11 | 15 | 10 | 20 |
120 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 16 | 15-15 | 13 | 10 | 13 | 24 | 11 | 11 | 15 | 10 | 20 |
121 | 1 | 0.006 | 15 | 13 | 24 | 30 | 18 | 16 | 15-15 | 13 | 11 | 12 | 22 | 11 | 11 | 15 | 10 | 20 |
122 | 1 | 0.006 | 15 | 13 | 24 | 32 | 17 | 16 | 15-15 | 11 | 10 | 12 | 21 | 11 | 11 | 15 | 10 | 20 |
123 | 1 | 0.006 | 17 | 13 | 25 | 29 | 17 | 15 | 11-14 | 13 | 10 | 11 | 23 | 11 | 12 | 14 | 11 | 19 |
124 | 1 | 0.006 | 16 | 13 | 25 | 30 | 16 | 15 | 11-14 | 13 | 10 | 11 | 23 | 11 | 13 | 14 | 11 | 20 |
125 | 1 | 0.006 | 15 | 13 | 24 | 32 | 18 | 16 | 14-15 | 13 | 11 | 13 | 22 | 10 | 11 | 15 | 10 | 20 |
126 | 1 | 0.006 | 15 | 13 | 23 | 31 | 17 | 15 | 14-15 | 13 | 11 | 13 | 22 | 11 | 11 | 15 | 10 | 20 |
127 | 1 | 0.006 | 15 | 13 | 24 | 32 | 17 | 16 | 13-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 20 |
128 | 1 | 0.006 | 15 | 13 | 22 | 30 | 15 | 15 | 12-15 | 12 | 10 | 11 | 21 | 11 | 11 | 14 | 9 | 21 |
129 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 18 | 13-15 | 13 | 11 | 12 | 22 | 11 | 11 | 15 | 10 | 20 |
130 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 16 | 14-15 | 13 | 10 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
131 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 17 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 20 |
132 | 1 | 0.006 | 16 | 13 | 24 | 30 | 14 | 15 | 13-17 | 11 | 9 | 12 | 21 | 11 | 12 | 14 | 9 | 21 |
133 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 14 | 14-15 | 12 | 11 | 14 | 23 | 11 | 11 | 15 | 10 | 19 |
134 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 15 | 14-15 | 12 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
135 | 1 | 0.006 | 15 | 13 | 24 | 31 | 17 | 17 | 14-15 | 12 | 11 | 12 | 23 | 11 | 11 | 15 | 10 | 19 |
136 | 1 | 0.006 | 14 | 13 | 25 | 31 | 19 | 16 | 14-15 | 13 | 10 | 11 | 23 | 11 | 11 | 15 | 10 | 19 |
137 | 1 | 0.006 | 15 | 14 | 26 | 31 | 15 | 15 | 11-16 | 13 | 9 | 10 | 23 | 11 | 12 | 14 | 11 | 20 |
138 | 1 | 0.006 | 13 | 12 | 24 | 29 | 16 | 15 | 13-15 | 13 | 9 | 11 | 21 | 11 | 11 | 16 | 10 | 20 |
139 | 1 | 0.006 | 16 | 14 | 25 | 31 | 17 | 16 | 12-15 | 11 | 11 | 10 | 24 | 10 | 12 | 14 | 11 | 20 |
140 | 1 | 0.006 | 15 | 13 | 25 | 31 | 17 | 17 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 20 |
141 | 1 | 0.006 | 15 | 13 | 23 | 31 | 17 | 16 | 14-15 | 11 | 11 | 12 | 21 | 10 | 11 | 15 | 10 | 19 |
142 | 1 | 0.006 | 17 | 14 | 25 | 31 | 15 | 16 | 12-14 | 11 | 10 | 10 | 24 | 10 | 12 | 14 | 11 | 20 |
143 | 1 | 0.006 | 16 | 13 | 22 | 29 | 15 | 15 | 13-16 | 9 | 9 | 12 | 23 | 10 | 12 | 14 | 9 | 22 |
144 | 1 | 0.006 | 15 | 12 | 22 | 29 | 16 | 15 | 14-14 | 13 | 10 | 11 | 20 | 11 | 11 | 16 | 10 | 21 |
145 | 1 | 0.006 | 15 | 13 | 23 | 31 | 17 | 14 | 14-15 | 11 | 11 | 13 | 22 | 10 | 12 | 15 | 10 | 19 |
146 | 1 | 0.006 | 14 | 12 | 22 | 28 | 16 | 16 | 15-19 | 10 | 10 | 12 | 22 | 11 | 12 | 14 | 9 | 19 |
147 | 1 | 0.006 | 15 | 13 | 22 | 29 | 17 | 14 | 11-14 | 11 | 11 | 11 | 24 | 13 | 11 | 15 | 13 | 19 |
148 | 1 | 0.006 | 15 | 13 | 24 | 31 | 16 | 14 | 14-15 | 13 | 11 | 13 | 23 | 11 | 11 | 15 | 10 | 19 |
149 | 1 | 0.006 | 14 | 13 | 22 | 30 | 14 | 14 | 14-17 | 12 | 10 | 11 | 24 | 11 | 11 | 15 | 9 | 21 |
150 | 1 | 0.006 | 15 | 13 | 24 | 31 | 18 | 16 | 15-17 | 11 | 11 | 13 | 24 | 10 | 11 | 15 | 10 | 19 |
151 | 1 | 0.006 | 18 | 13 | 24 | 30 | 15 | 13 | 16-18 | 11 | 10 | 12 | 22 | 11 | 11 | 14 | 10 | 20 |
152 | 1 | 0.006 | 16 | 13 | 24 | 30 | 16 | 16 | 11-14 | 12 | 11 | 11 | 23 | 11 | 13 | 14 | 11 | 20 |
*Abbreviations: n – number of individuals; f – haplotype frequency.
Our results are in accordance with the results reported in the previous study of 457 unrelated Croatian men, of whom 274 belonged to southern Croatian population (8). In that study, Y-STR polymorphisms across 8 loci were analyzed, 7 of which were identical to the loci analyzed in our study. However, we used additional 10 Y-STR markers, thus providing further population data for southern Croatian men.
Our results differ significantly from the results reported for western Croatian population (9). The differences were found across all loci, both in allele frequency and in locus diversity values. Furthermore, not a single haplotype that appeared more than once in western Croatian population (17 out of 101) matched the haplotypes that appeared more than once in southern Croatian population (25 out of 166). The combination of Y-chromosome 17 STR loci may be used as a powerful tool for individual identification and parentage analysis in the southern Croatian male population.
Acknowledgment
We thank Ms Boja Režić for excellent technical assistance. This study was supported by the Ministry of Science, Education, and Sports of the Republic of Croatia, grant No. 141-2160800-0333 for the research project “DNA analysis of an early medieval population from South Croatia.”
References
- 1.Jobling MA, Gill P. Encoded evidence: DNA in forensic analysis. Nat Rev Genet. 2004;5:739–51. doi: 10.1038/nrg1455. [DOI] [PubMed] [Google Scholar]
- 2.Pericic M, Barac Lauc L, Martinovic Klaric I, Janicijevic B, Rudan P. Review of Croatian genetic heritage as revealed by mitochondrial DNA and Y chromosomal lineages. Croat Med J. 2005;46:502–13. [PubMed] [Google Scholar]
- 3.Walsh PS, Metzger DA, Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques. 1991;10:506–13. [PubMed] [Google Scholar]
- 4.Bar W, Brinkmann B, Budowle B, Carracedo A, Gill P, Lincoln P, et al. DNA recommendations. Further report of the DNA Commission of the ISFH regarding the use of short tandem repeat systems. International Society for Forensic Haemogenetics. Int J Legal Med. 1997;110:175–6. doi: 10.1007/s004140050061. [DOI] [PubMed] [Google Scholar]
- 5.Schneider S, Roessli D, Excoffier L. Arlequin ver 2.000: a software for population genetic data analysis. Geneva: Genetics and Biometry Laboratory, University of Geneva, Switzerland; 2000. [Google Scholar]
- 6.Lincoln P, Carracedo A. Publication of population data of human polymorphisms. Forensic Sci Int. 2000;110:3–5. doi: 10.1016/S0379-0738(00)00168-7. [DOI] [PubMed] [Google Scholar]
- 7.Gusmao L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR, et al. DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Sci Int. 2006;157:187–97. doi: 10.1016/j.forsciint.2005.04.002. [DOI] [PubMed] [Google Scholar]
- 8.Barac L, Pericic M, Klaric IM, Janicijevic B, Parik J, Rootsi S, et al. Y chromosome STRs in Croatians. Forensic Sci Int. 2003;138:127–33. doi: 10.1016/j.forsciint.2003.09.004. [DOI] [PubMed] [Google Scholar]
- 9.Lovrecic L, Ristic S, Brajenovic B, Kapovic M, Peterlin B. Human Y-specific STR haplotypes in the Western Croatian population sample. Forensic Sci Int. 2005;149:257–61. doi: 10.1016/j.forsciint.2004.06.026. [DOI] [PubMed] [Google Scholar]