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. 1986 Oct;52(4):866–874. doi: 10.1128/aem.52.4.866-874.1986

Method for Assessing Heterogeneity in Turnover Rates within Microbial Communities

Edward A Laws 2,*, David Jones 2, David M Karl 2
PMCID: PMC239129  PMID: 16347178

Abstract

A method is presented for determining both the average turnover rate and the standard deviation of the average turnover rate of the adenine nucleotide (AN) pool within a population of microorganisms. The method requires the calculation of the initial slope and curvature of a plot of AN specific activity versus time following the introduction of [3H]adenine. An analysis of noise-corrupted data indicated that the method is capable of detecting a lack of uniformity in the turnover rate when the coefficient of variation of the turnover rate exceeds 39%. An analysis of field data revealed a significant lack of uniformity in the turnover rates of microbial communities in a marine sediment sample and freshwater pond but no significant nonuniformity in the turnover rates of microbial communities in a seawater sample and in a second freshwater pond. Although the method has been applied only to the analysis of AN turnover rates, it is applicable to any intracellular pool for which a suitable radioactive precursor exists.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Chapman A. G., Atkinson D. E. Adenine nucleotide concentrations and turnover rates. Their correlation with biological activity in bacteria and yeast. Adv Microb Physiol. 1977;15:253–306. doi: 10.1016/s0065-2911(08)60318-5. [DOI] [PubMed] [Google Scholar]
  2. Fuhrman J. A., Azam F. Bacterioplankton secondary production estimates for coastal waters of british columbia, antarctica, and california. Appl Environ Microbiol. 1980 Jun;39(6):1085–1095. doi: 10.1128/aem.39.6.1085-1095.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Hagström A., Larsson U., Hörstedt P., Normark S. Frequency of dividing cells, a new approach to the determination of bacterial growth rates in aquatic environments. Appl Environ Microbiol. 1979 May;37(5):805–812. doi: 10.1128/aem.37.5.805-812.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Karl D. M., Bossard P. Measurement of Microbial Nucleic Acid Synthesis and Specific Growth Rate by PO(4) and [H]Adenine: Field Comparison. Appl Environ Microbiol. 1985 Sep;50(3):706–709. doi: 10.1128/aem.50.3.706-709.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Karl D. M. Measurement of microbial activity and growth in the ocean by rates of stable ribonucleic Acid synthesis. Appl Environ Microbiol. 1979 Nov;38(5):850–860. doi: 10.1128/aem.38.5.850-860.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Karl D. M. Simultaneous rates of ribonucleic Acid and deoxyribonucleic Acid syntheses for estimating growth and cell division of aquatic microbial communities. Appl Environ Microbiol. 1981 Nov;42(5):802–810. doi: 10.1128/aem.42.5.802-810.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Novitsky J. A. Heterotrophic activity throughout a vertical profile of seawater and sediment in halifax harbor, Canada. Appl Environ Microbiol. 1983 Jun;45(6):1753–1760. doi: 10.1128/aem.45.6.1753-1760.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Stahl D. A., Lane D. J., Olsen G. J., Pace N. R. Analysis of hydrothermal vent-associated symbionts by ribosomal RNA sequences. Science. 1984 Apr 27;224(4647):409–411. doi: 10.1126/science.224.4647.409. [DOI] [PubMed] [Google Scholar]

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