Abstract
In the year 2001 a collection of yeast strains will be completed that are deleted in the 6000 open reading frames selected as putative genes by the initial bioinformatic analysis of the Saccharomyces cerevisiae genome. The collection was produced by the transatlantic yeast gene deletion project, a collaboration involving researchers in the USA, Canada and Europe. The European effort was part of EUROFAN (European Functional Analysis Network) where some of the strains could feed into various functional analysis nodes dealing with specific areas of cell biology. With approximately 40% of human genes involved in heritable disease having a homologue in yeast and with the use of yeast in various drug discovery strategies, not least due to the dramatic increase in fungal infections, these strains will be valuable in trans-genomic studies and in specialised interest studies in individual laboratories. A detailed analysis of the project by the consortium is in preparation, here we discuss the yeast strains, reported findings and approaches to using this resource.
Full Text
The Full Text of this article is available as a PDF (115.8 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Daum G., Tuller G., Nemec T., Hrastnik C., Balliano G., Cattel L., Milla P., Rocco F., Conzelmann A., Vionnet C. Systematic analysis of yeast strains with possible defects in lipid metabolism. Yeast. 1999 May;15(7):601–614. doi: 10.1002/(SICI)1097-0061(199905)15:7<601::AID-YEA390>3.0.CO;2-N. [DOI] [PubMed] [Google Scholar]
- Giaever G., Shoemaker D. D., Jones T. W., Liang H., Winzeler E. A., Astromoff A., Davis R. W. Genomic profiling of drug sensitivities via induced haploinsufficiency. Nat Genet. 1999 Mar;21(3):278–283. doi: 10.1038/6791. [DOI] [PubMed] [Google Scholar]
- Goffeau A., Barrell B. G., Bussey H., Davis R. W., Dujon B., Feldmann H., Galibert F., Hoheisel J. D., Jacq C., Johnston M. Life with 6000 genes. Science. 1996 Oct 25;274(5287):546, 563-7. doi: 10.1126/science.274.5287.546. [DOI] [PubMed] [Google Scholar]
- Hughes T. R., Marton M. J., Jones A. R., Roberts C. J., Stoughton R., Armour C. D., Bennett H. A., Coffey E., Dai H., He Y. D. Functional discovery via a compendium of expression profiles. Cell. 2000 Jul 7;102(1):109–126. doi: 10.1016/s0092-8674(00)00015-5. [DOI] [PubMed] [Google Scholar]
- Hughes T. R., Roberts C. J., Dai H., Jones A. R., Meyer M. R., Slade D., Burchard J., Dow S., Ward T. R., Kidd M. J. Widespread aneuploidy revealed by DNA microarray expression profiling. Nat Genet. 2000 Jul;25(3):333–337. doi: 10.1038/77116. [DOI] [PubMed] [Google Scholar]
- Lamb David, Kelly Diane, Kelly Steven. Molecular aspects of azole antifungal action and resistance. Drug Resist Updat. 1999 Dec;2(6):390–402. doi: 10.1054/drup.1999.0112. [DOI] [PubMed] [Google Scholar]
- Lucau-Danila A., Wysocki R., Roganti T., Foury F. Systematic disruption of 456 ORFs in the yeast Saccharomyces cerevisiae. Yeast. 2000 Apr;16(6):547–552. doi: 10.1002/(SICI)1097-0061(200004)16:6<547::AID-YEA552>3.0.CO;2-2. [DOI] [PubMed] [Google Scholar]
- Moebius F. F., Soellner K. E., Fiechtner B., Huck C. W., Bonn G., Glossmann H. Histidine77, glutamic acid81, glutamic acid123, threonine126, asparagine194, and tryptophan197 of the human emopamil binding protein are required for in vivo sterol delta 8-delta 7 isomerization. Biochemistry. 1999 Jan 19;38(3):1119–1127. doi: 10.1021/bi981804i. [DOI] [PubMed] [Google Scholar]
- Niedenthal R., Riles L., Güldener U., Klein S., Johnston M., Hegemann J. H. Systematic analysis of S. cerevisiae chromosome VIII genes. Yeast. 1999 Dec;15(16):1775–1796. doi: 10.1002/(SICI)1097-0061(199912)15:16<1775::AID-YEA496>3.0.CO;2-U. [DOI] [PubMed] [Google Scholar]
- Rine J., Hansen W., Hardeman E., Davis R. W. Targeted selection of recombinant clones through gene dosage effects. Proc Natl Acad Sci U S A. 1983 Nov;80(22):6750–6754. doi: 10.1073/pnas.80.22.6750. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wach A., Brachat A., Pöhlmann R., Philippsen P. New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast. 1994 Dec;10(13):1793–1808. doi: 10.1002/yea.320101310. [DOI] [PubMed] [Google Scholar]
- Winzeler E. A., Shoemaker D. D., Astromoff A., Liang H., Anderson K., Andre B., Bangham R., Benito R., Boeke J. D., Bussey H. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science. 1999 Aug 6;285(5429):901–906. doi: 10.1126/science.285.5429.901. [DOI] [PubMed] [Google Scholar]
- Wood V., Rutherford K. M., Ivens A., Rajandream M. A., Barrell B. A re-annotation of the Saccharomyces cerevisiae genome. Comp Funct Genomics. 2001;2(3):143–154. doi: 10.1002/cfg.86. [DOI] [PMC free article] [PubMed] [Google Scholar]
- de Groot P. W., Ruiz C., Vázquez de Aldana C. R., Duenas E., Cid V. J., Del Rey F., Rodríquez-Peña J. M., Pérez P., Andel A., Caubín J., Arroyo J., García J. C., Gil C., Molina M., García L. J., Nombela C., Klis F. M. A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae. Comp Funct Genomics. 2001;2(3):124–142. doi: 10.1002/cfg.85. [DOI] [PMC free article] [PubMed] [Google Scholar]
