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. 2003 Feb;4(1):85–89. doi: 10.1002/cfg.244

Developing a Protein-Interactions Ontology

Esther Ratsch 1,, Jörg Schultz 3, Jasmin Saric 1, Philipp Cimiano Lavin 1,2, Ulrike Wittig 1, Uwe Reyle 2, Isabel Rojas 1
PMCID: PMC2447378  PMID: 18629092

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aaronson David S., Horvath Curt M. A road map for those who don't know JAK-STAT. Science. 2002 May 31;296(5573):1653–1655. doi: 10.1126/science.1071545. [DOI] [PubMed] [Google Scholar]
  2. Duan Xiaoqun Joyce, Xenarios Ioannis, Eisenberg David. Describing biological protein interactions in terms of protein states and state transitions: the LiveDIP database. Mol Cell Proteomics. 2002 Feb;1(2):104–116. doi: 10.1074/mcp.m100026-mcp200. [DOI] [PubMed] [Google Scholar]
  3. Karp P. D. An ontology for biological function based on molecular interactions. Bioinformatics. 2000 Mar;16(3):269–285. doi: 10.1093/bioinformatics/16.3.269. [DOI] [PubMed] [Google Scholar]
  4. Rojas Isabel, Bernardi Luca, Ratsch Esther, Kania Renate, Wittig Ulrike, Saric Jasmin. A database system for the analysis of biochemical pathways. In Silico Biol. 2002;2(2):75–86. [PubMed] [Google Scholar]
  5. Rzhetsky A., Koike T., Kalachikov S., Gomez S. M., Krauthammer M., Kaplan S. H., Kra P., Russo J. J., Friedman C. A knowledge model for analysis and simulation of regulatory networks. Bioinformatics. 2000 Dec;16(12):1120–1128. doi: 10.1093/bioinformatics/16.12.1120. [DOI] [PubMed] [Google Scholar]
  6. Schomburg Ida, Chang Antje, Schomburg Dietmar. BRENDA, enzyme data and metabolic information. Nucleic Acids Res. 2002 Jan 1;30(1):47–49. doi: 10.1093/nar/30.1.47. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Takai-Igarashi T., Nadaoka Y., Kaminuma T. A database for cell signaling networks. J Comput Biol. 1998 Winter;5(4):747–754. doi: 10.1089/cmb.1998.5.747. [DOI] [PubMed] [Google Scholar]
  8. Xenarios I., Eisenberg D. Protein interaction databases. Curr Opin Biotechnol. 2001 Aug;12(4):334–339. doi: 10.1016/s0958-1669(00)00224-x. [DOI] [PubMed] [Google Scholar]

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